IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1546	 60.42	0	1541702..1541845	-	47	161619537	-	BCAN_A1632	-	hypothetical protein
1547	 58.25	0	1541844..1542473	+	209	161619538	-	BCAN_A1633	-	hypothetical protein
1548	 54.79	0	1542586..1543284	-	232	161619539	-	BCAN_A1634	-	hypothetical protein
1549	 56.74	0	1543815..1544207	+	130	161619540	-	BCAN_A1635	-	hypothetical protein
1550	 56.62	0	1544291..1545415	-	374	161619541	degT	BCAN_A1636	-	pleiotropic regulatory protein
1551	 56.64	0	1545575..1546531	-	318	161619542	-	BCAN_A1637	-	oxidoreductase domain-containing protein
1552	 46.83	-2	1546537..1546662	-	41	161619543	-	BCAN_A1638	-	hypothetical protein
1553	 49.41	-1	1546933..1547187	+	84	161619544	-	BCAN_A1640	-	hypothetical protein
1554	 50.32	-1	1547363..1548145	-	260	161619545	lgtE	BCAN_A1641	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtE
1555	 60.52	0	1548890..1551997	+	1035	161619546	-	BCAN_A1643	-	PAS domain-containing protein
1556	 45.45	-2	1552217..1552348	-	43	161619547	-	BCAN_A1644	-	hypothetical protein
1557	 59.96	0	1552738..1554675	+	645	161619548	-	BCAN_A1645	-	AsmA family protein
1558	 59.00	0	1554683..1555504	-	273	161619549	potC	BCAN_A1646	-	spermidine/putrescine ABC transporter permease
1559	 56.25	0	1555506..1556417	-	303	161619550	-	BCAN_A1647	-	binding-protein-dependent transport systems inner membrane component
1560	 57.42	0	1556433..1557578	-	381	161619551	-	BCAN_A1648	-	polyamine ABC transporter, ATP-binding protein
1561	 55.53	0	1557820..1558923	-	367	161619552	-	BCAN_A1649	-	hypothetical protein
1562	 62.63	+1	1559145..1560557	-	470	161619553	-	BCAN_A1650	-	hypothetical protein
1563	 60.16	0	1560806..1562095	+	429	161619554	aceA	BCAN_A1651	-	isocitrate lyase
1564	 55.70	0	1562130..1562366	+	78	161619555	-	BCAN_A1652	-	hypothetical protein
1565	 55.04	0	1562363..1562491	+	42	161619556	-	BCAN_A1653	-	hypothetical protein
1566	 59.64	0	1563203..1563970	+	255	161619557	-	BCAN_A1655	-	7-alpha-hydroxysteroid dehydrogenase
1567	 57.11	0	1564036..1564830	+	264	161619558	-	BCAN_A1656	-	2-deoxy-D-gluconate 3-dehydrogenase
1568	 56.05	0	1564837..1566597	+	586	161619559	-	BCAN_A1657	-	hypothetical protein
1569	 57.72	0	1566613..1567227	+	204	161619560	-	BCAN_A1658	-	hypothetical protein
1570	 53.51	0	1568428..1569978	-	516	161619561	-	BCAN_A1660	-	patatin-like phospholipase domain-containing protein
1571	 49.65	-1	1570531..1570812	+	93	161619562	-	BCAN_A1661	-	hypothetical protein
1572	 55.24	0	1571089..1571832	-	247	161619563	-	BCAN_A1662	-	dihydroxyacetone kinase, L subunit
1573	 56.16	0	1571802..1573886	-	694	161619564	-	BCAN_A1663	-	3,4-dihydroxy-2-butanone kinase
1574	 57.38	0	1574045..1574701	-	218	161619565	-	BCAN_A1664	-	dihydroxyacetone kinase, L subunit
1575	 56.75	0	1574698..1575726	-	342	161619566	-	BCAN_A1665	-	3,4-dihydroxy-2-butanone kinase
1576	 55.81	0	1575723..1576496	-	257	161619567	polS	BCAN_A1666	-	short chain dehydrogenase
1577	 55.35	0	1576585..1577574	-	329	161619568	mocB	BCAN_A1667	-	rhizopine-binding protein precursor
1578	 57.31	0	1577750..1578754	-	334	161619569	-	BCAN_A1668	-	hypothetical protein
1579	 55.92	0	1578850..1580328	-	492	161619570	-	BCAN_A1669	-	ribose/galactose/methyl galactoside import ATP-binding protein 2
1580	 44.12	-2	1580377..1580478	-	33	161619571	-	BCAN_A1670	-	hypothetical protein
1581	 52.83	-1	1580624..1580941	+	105	161619572	-	BCAN_A1671	-	hypothetical protein
1582	 52.71	-1	1581071..1581199	-	42	161619573	-	BCAN_A1672	-	hypothetical protein
1583	 45.10	-2	1583607..1583759	+	50	161619574	-	BCAN_A1676	-	hypothetical protein
1584	 42.80	-2	1586714..1586956	+	80	161619575	-	BCAN_A1678	-	hypothetical protein
1585	 58.76	0	1589658..1590479	-	273	161619576	-	BCAN_A1682	-	regulatory protein IclR
1586	 58.82	0	1590597..1592048	+	483	161619577	-	BCAN_A1683	-	succinic semialdehyde dehydrogenase
1587	 58.38	0	1592165..1592755	+	196	161619578	-	BCAN_A1684	-	hypothetical protein
1588	 57.61	0	1592868..1593386	+	172	161619579	-	BCAN_A1685	-	disulfide bond formation protein B
1589	 56.54	0	1593403..1593975	-	190	161619580	-	BCAN_A1686	-	HNH endonuclease
1590	 63.66	+1	1594249..1594947	-	232	161619581	-	BCAN_A1687	-	HhH-GPD family protein
1591	 58.56	0	1594969..1595844	+	291	161619582	gltX	BCAN_A1688	-	glutamyl-Q tRNA(Asp) synthetase
1592	 58.48	0	1595987..1598173	+	728	161619583	glcB	BCAN_A1689	-	malate synthase G
1593	 57.98	0	1598478..1598972	+	164	161619584	pat	BCAN_A1690	-	phosphinothricin N-acetyltransferase
1594	 58.44	0	1599031..1599942	-	303	161619585	rpoH	BCAN_A1691	-	RNA polymerase factor sigma-32
1595	 59.67	0	1600373..1601416	-	347	161619586	-	BCAN_A1692	-	RluA family pseudouridine synthase
1596	 58.07	0	1601433..1601909	+	158	161619587	-	BCAN_A1693	-	hypothetical protein
1597	 52.30	-1	1601943..1602116	+	57	161619588	-	BCAN_A1694	-	hypothetical protein
1598	 52.82	-1	1602288..1602713	+	141	161619589	fur	BCAN_A1696	-	ferric uptake regulation protein
1599	 56.41	0	1602949..1603884	-	311	161619590	-	BCAN_A1697	-	signal transduction histidine kinase
1600	 48.10	-2	1604152..1604361	-	69	161619591	-	BCAN_A1698	-	hypothetical protein
1601	 56.23	0	1604466..1605260	-	264	161619592	phyR	BCAN_A1699	-	two-component response regulator
1602	 60.56	0	1605707..1606279	+	190	161619593	-	BCAN_A1700	-	RNA polymerase sigma factor
1603	 56.95	0	1606480..1607910	+	476	161619594	-	BCAN_A1701	-	signal transduction histidine kinase
1604	 58.10	0	1607971..1608402	-	143	161619595	-	BCAN_A1702	-	hypothetical protein
1605	 57.63	0	1608411..1608764	-	117	161619596	-	BCAN_A1703	-	hypothetical protein
1606	 57.30	0	1608929..1609771	-	280	161619597	-	BCAN_A1704	-	PRC-barrel domain-containing protein
1607	 57.86	0	1609944..1610102	-	52	161619598	-	BCAN_A1705	-	hypothetical protein
1608	 48.04	-2	1610233..1610436	+	67	161619599	-	BCAN_A1706	-	hypothetical protein
1609	 63.64	+1	1610553..1611476	+	307	161619600	exbB	BCAN_A1707	-	tonB-system energizer ExbB
1610	 60.40	0	1611482..1611976	+	164	161619601	exbD	BCAN_A1708	-	TonB system transport protein ExbD
1611	 61.06	0	1611973..1612899	+	308	161619602	-	BCAN_A1709	-	TonB family protein
1612	 56.03	0	1612942..1613712	-	256	161619603	-	BCAN_A1710	-	hypothetical protein
1613	 59.20	0	1613731..1615686	-	651	161619604	macB	BCAN_A1711	-	macrolide export ATP-binding/permease protein macB
1614	 59.01	0	1615686..1616912	-	408	161619605	-	BCAN_A1712	-	RND family efflux transporter MFP subunit
1615	 61.39	+1	1617147..1617620	-	157	161619606	dut	BCAN_A1713	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1616	 56.48	0	1617843..1618313	-	156	161619607	-	BCAN_A1714	-	AsnC family transcriptional regulator
1617	 53.70	0	1618459..1618674	+	71	161619608	-	BCAN_A1715	-	hypothetical protein
1618	 60.30	0	1618714..1619577	+	287	161619609	-	BCAN_A1716	-	glutamine amidotransferase class-II
1619	 59.35	0	1619604..1620587	-	327	161619610	-	BCAN_A1717	-	rubrerythrin
1620	 59.87	0	1620782..1622134	+	450	161619611	-	BCAN_A1718	-	hypothetical protein
1621	 60.73	0	1622344..1623741	-	465	161619612	-	BCAN_A1719	-	hypothetical protein
1622	 54.05	0	1623939..1624049	-	36	161619613	-	BCAN_A1720	-	hypothetical protein
1623	 60.85	0	1624054..1625343	-	429	161619614	purA	BCAN_A1721	-	adenylosuccinate synthetase
1624	 56.86	0	1625661..1626170	-	169	161619615	-	BCAN_A1722	-	hypothetical protein
1625	 57.49	0	1626175..1627776	-	533	161619616	serA	BCAN_A1723	-	D-3-phosphoglycerate dehydrogenase
1626	 52.63	-1	1627748..1627918	-	56	161619617	-	BCAN_A1724	-	hypothetical protein
1627	 58.67	0	1627930..1629105	-	391	161619618	-	BCAN_A1725	-	phosphoserine aminotransferase
1628	 56.12	0	1630392..1631216	-	274	161619619	-	BCAN_A1729	-	porin opacity type
1629	 57.90	0	1631401..1632780	-	459	161619620	glmM	BCAN_A1730	-	phosphoglucosamine mutase
1630	 58.29	0	1633061..1634995	-	644	161619621	ftsH	BCAN_A1731	-	ATP-dependent metalloprotease FtsH
1631	 61.10	0	1635131..1636477	-	448	161619622	tilS	BCAN_A1732	-	tRNA(Ile)-lysidine synthase
1632	 59.92	0	1636493..1637959	-	488	161619623	ygbF	BCAN_A1733	-	tol-pal system protein YbgF
1633	 62.52	+1	1638356..1638862	-	168	161619624	pal	BCAN_A1734	-	peptidoglycan-associated lipoprotein
1634	 49.44	-1	1638911..1639090	-	59	161619625	-	BCAN_A1735	-	hypothetical protein
1635	 59.31	0	1639150..1640481	-	443	161619626	tolB	BCAN_A1736	-	translocation protein TolB
1636	 60.32	0	1640537..1641607	-	356	161619627	-	BCAN_A1737	-	TolA protein
1637	 55.19	0	1641615..1642067	-	150	161619628	tolR	BCAN_A1738	-	protein TolR
1638	 59.07	0	1642114..1642824	-	236	161619629	tolQ	BCAN_A1739	-	protein TolQ
1639	 58.16	0	1643199..1643480	-	93	161619630	-	BCAN_A1740	-	thioesterase superfamily protein
1640	 61.67	+1	1643628..1644668	-	346	161619631	ruvB	BCAN_A1741	-	Holliday junction DNA helicase B
1641	 61.33	+1	1644709..1645326	-	205	161619632	ruvA	BCAN_A1742	-	Holliday junction DNA helicase motor protein
1642	 59.77	0	1645331..1645852	-	173	161619633	ruvC	BCAN_A1743	-	Holliday junction resolvase
1643	 60.95	0	1645954..1646460	-	168	161619634	-	BCAN_A1744	-	hypothetical protein
1644	 58.71	0	1646948..1648129	-	393	161619635	-	BCAN_A1745	-	hypothetical protein
1645	 61.71	+1	1648374..1649039	+	221	161619636	thiE	BCAN_A1746	-	thiamine-phosphate pyrophosphorylase
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.