IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1489	 58.17	0	1484493..1485116	+	207	161619480	-	BCAN_A1572	-	50S ribosomal protein L25/general stress protein Ctc
1490	 56.97	0	1485145..1485897	+	250	161619481	pth	BCAN_A1573	-	peptidyl-tRNA hydrolase
1491	 59.42	0	1485985..1487088	+	367	161619482	ychF	BCAN_A1574	-	translation-associated GTPase
1492	 57.29	0	1487150..1487650	+	166	161619483	-	BCAN_A1575	-	dehydratase
1493	 57.76	0	1487647..1488129	+	160	161619484	-	BCAN_A1576	-	dehydratase
1494	 56.33	0	1488171..1488731	-	186	161619485	apt	BCAN_A1577	-	adenine phosphoribosyltransferase
1495	 57.43	0	1489039..1489926	-	295	161619486	petC	BCAN_A1578	-	cytochrome c1 precursor
1496	 57.04	0	1489940..1491238	-	432	161619487	petB	BCAN_A1579	-	cytochrome b
1497	 58.16	0	1491260..1491823	-	187	161619488	petA	BCAN_A1580	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1498	 58.43	0	1492075..1493943	-	622	161619489	-	BCAN_A1581	-	ABC transporter related
1499	 57.16	0	1494097..1495989	-	630	161619490	-	BCAN_A1582	-	ABC transporter related
1500	 58.54	0	1496110..1496589	+	159	161619491	-	BCAN_A1583	-	tRNA/rRNA methyltransferase (SpoU)
1501	 56.96	0	1496624..1497736	+	370	161619492	-	BCAN_A1584	-	purine nucleoside permease
1502	 62.07	+1	1497848..1498108	-	86	161619493	-	BCAN_A1585	-	hypothetical protein
1503	 57.79	0	1498402..1499313	+	303	161619494	-	BCAN_A1586	-	coproporphyrinogen III oxidase
1504	 61.01	0	1499347..1499841	-	164	161619495	-	BCAN_A1587	-	GCN5-related N-acetyltransferase
1505	 59.36	0	1500874..1502145	-	423	161619496	-	BCAN_A1590	-	Poly-A polymerase/tRNA nucleotidyltransferase
1506	 61.22	0	1502142..1502765	-	207	161619497	-	BCAN_A1591	-	NUDIX hydrolase
1507	 60.06	0	1502762..1503427	-	221	161619498	-	BCAN_A1592	-	hypothetical protein
1508	 61.90	+1	1503547..1504554	+	335	161619499	-	BCAN_A1593	-	hypothetical protein
1509	 63.56	+1	1504554..1505486	+	310	161619500	-	BCAN_A1594	-	hypothetical protein
1510	 61.65	+1	1505483..1508332	+	949	161619501	-	BCAN_A1595	-	hypothetical protein
1511	 60.55	0	1508396..1510471	+	691	161619502	-	BCAN_A1596	-	hypothetical protein
1512	 63.12	+1	1510539..1511045	-	168	161619503	-	BCAN_A1597	-	GCN5-related N-acetyltransferase
1513	 56.81	0	1511349..1512332	+	327	161619504	-	BCAN_A1598	-	glutathione S-transferase
1514	 56.29	0	1512480..1513163	+	227	161619505	alkL	BCAN_A1599	-	Outer membrane protein alkL precursor
1515	 53.51	0	1513197..1513652	-	151	161619506	-	BCAN_A1600	-	hypothetical protein
1516	 60.02	0	1513761..1514663	+	300	161619507	-	BCAN_A1601	-	metallophosphoesterase
1517	 57.52	0	1514864..1516591	-	575	161619508	leuA	BCAN_A1602	-	2-isopropylmalate synthase
1518	 58.49	0	1516723..1516881	-	52	161619509	-	BCAN_A1603	-	hypothetical protein
1519	 58.53	0	1516896..1517804	-	302	161619510	-	BCAN_A1604	-	cation diffusion facilitator family transporter
1520	 45.39	-2	1517814..1518095	+	93	161619511	-	BCAN_A1605	-	hypothetical protein
1521	 58.38	0	1518274..1520469	-	731	161619512	-	BCAN_A1606	-	anthranilate synthase
1522	 52.85	-1	1520411..1520656	+	81	161619513	-	BCAN_A1607	-	hypothetical protein
1523	 54.98	0	1521148..1521609	+	153	161619514	lrp	BCAN_A1608	-	leucine-responsive regulatory protein
1524	 58.88	0	1521750..1522160	+	136	161619515	-	BCAN_A1609	-	MarR family transcriptional regulator
1525	 61.33	+1	1522255..1523547	+	430	161619516	-	BCAN_A1610	-	major facilitator transporter
1526	 62.84	+1	1523542..1524507	-	321	161619517	-	BCAN_A1611	-	ribosomal small subunit Rsm22
1527	 58.06	0	1524513..1525709	-	398	161619518	-	BCAN_A1612	-	hypothetical protein
1528	 54.43	0	1525706..1525942	-	78	161619519	-	BCAN_A1613	-	hypothetical protein
1529	 55.56	0	1526366..1527112	+	248	161619520	-	BCAN_A1614	-	substrate-binding region of ABC-type glycine betaine transport system
1530	 56.51	0	1527201..1528037	+	278	161619521	-	BCAN_A1615	-	binding-protein-dependent transport systems inner membrane component
1531	 58.64	0	1528207..1529253	+	348	161619522	-	BCAN_A1616	-	ABC transporter related
1532	 56.54	0	1529527..1530375	-	282	161619523	-	BCAN_A1617	-	hypothetical protein
1533	 56.30	0	1530372..1531220	-	282	161619524	-	BCAN_A1618	-	ABC transporter related
1534	 58.50	0	1531226..1532107	-	293	161619525	dppC	BCAN_A1619	-	peptide ABC transporter permease
1535	 55.36	0	1532115..1533122	-	335	161619526	dppB	BCAN_A1620	-	peptide ABC transporter permease
1536	 50.28	-1	1535289..1535465	+	58	161619527	-	BCAN_A1622	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1537	 39.47	-2	1535706..1535933	-	75	161619528	-	BCAN_A1623	-	hypothetical protein
1538	 48.56	-2	1535923..1536270	+	115	161619529	nolR	BCAN_A1624	-	nodulation protein nolR
1539	 54.63	0	1536300..1537130	+	276	161619530	-	BCAN_A1625	-	tRNA/rRNA methyltransferase (SpoU)
1540	 59.65	0	1537352..1538548	-	398	161619531	trmU	BCAN_A1626	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1541	 45.28	-2	1538585..1538743	-	52	161619532	-	BCAN_A1627	-	hypothetical protein
1542	 57.97	0	1538852..1539127	+	91	161619533	-	BCAN_A1628	-	hypothetical protein
1543	 56.12	0	1539330..1539623	+	97	161619534	-	BCAN_A1629	-	hypothetical protein
1544	 56.30	0	1539671..1540606	-	311	161619535	-	BCAN_A1630	-	Myosin-14
1545	 55.95	0	1540836..1541432	-	198	161619536	-	BCAN_A1631	-	hypothetical protein
1546	 60.42	0	1541702..1541845	-	47	161619537	-	BCAN_A1632	-	hypothetical protein
1547	 58.25	0	1541844..1542473	+	209	161619538	-	BCAN_A1633	-	hypothetical protein
1548	 54.79	0	1542586..1543284	-	232	161619539	-	BCAN_A1634	-	hypothetical protein
1549	 56.74	0	1543815..1544207	+	130	161619540	-	BCAN_A1635	-	hypothetical protein
1550	 56.62	0	1544291..1545415	-	374	161619541	degT	BCAN_A1636	-	pleiotropic regulatory protein
1551	 56.64	0	1545575..1546531	-	318	161619542	-	BCAN_A1637	-	oxidoreductase domain-containing protein
1552	 46.83	-2	1546537..1546662	-	41	161619543	-	BCAN_A1638	-	hypothetical protein
1553	 49.41	-1	1546933..1547187	+	84	161619544	-	BCAN_A1640	-	hypothetical protein
1554	 50.32	-1	1547363..1548145	-	260	161619545	lgtE	BCAN_A1641	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtE
1555	 60.52	0	1548890..1551997	+	1035	161619546	-	BCAN_A1643	-	PAS domain-containing protein
1556	 45.45	-2	1552217..1552348	-	43	161619547	-	BCAN_A1644	-	hypothetical protein
1557	 59.96	0	1552738..1554675	+	645	161619548	-	BCAN_A1645	-	AsmA family protein
1558	 59.00	0	1554683..1555504	-	273	161619549	potC	BCAN_A1646	-	spermidine/putrescine ABC transporter permease
1559	 56.25	0	1555506..1556417	-	303	161619550	-	BCAN_A1647	-	binding-protein-dependent transport systems inner membrane component
1560	 57.42	0	1556433..1557578	-	381	161619551	-	BCAN_A1648	-	polyamine ABC transporter, ATP-binding protein
1561	 55.53	0	1557820..1558923	-	367	161619552	-	BCAN_A1649	-	hypothetical protein
1562	 62.63	+1	1559145..1560557	-	470	161619553	-	BCAN_A1650	-	hypothetical protein
1563	 60.16	0	1560806..1562095	+	429	161619554	aceA	BCAN_A1651	-	isocitrate lyase
1564	 55.70	0	1562130..1562366	+	78	161619555	-	BCAN_A1652	-	hypothetical protein
1565	 55.04	0	1562363..1562491	+	42	161619556	-	BCAN_A1653	-	hypothetical protein
1566	 59.64	0	1563203..1563970	+	255	161619557	-	BCAN_A1655	-	7-alpha-hydroxysteroid dehydrogenase
1567	 57.11	0	1564036..1564830	+	264	161619558	-	BCAN_A1656	-	2-deoxy-D-gluconate 3-dehydrogenase
1568	 56.05	0	1564837..1566597	+	586	161619559	-	BCAN_A1657	-	hypothetical protein
1569	 57.72	0	1566613..1567227	+	204	161619560	-	BCAN_A1658	-	hypothetical protein
1570	 53.51	0	1568428..1569978	-	516	161619561	-	BCAN_A1660	-	patatin-like phospholipase domain-containing protein
1571	 49.65	-1	1570531..1570812	+	93	161619562	-	BCAN_A1661	-	hypothetical protein
1572	 55.24	0	1571089..1571832	-	247	161619563	-	BCAN_A1662	-	dihydroxyacetone kinase, L subunit
1573	 56.16	0	1571802..1573886	-	694	161619564	-	BCAN_A1663	-	3,4-dihydroxy-2-butanone kinase
1574	 57.38	0	1574045..1574701	-	218	161619565	-	BCAN_A1664	-	dihydroxyacetone kinase, L subunit
1575	 56.75	0	1574698..1575726	-	342	161619566	-	BCAN_A1665	-	3,4-dihydroxy-2-butanone kinase
1576	 55.81	0	1575723..1576496	-	257	161619567	polS	BCAN_A1666	-	short chain dehydrogenase
1577	 55.35	0	1576585..1577574	-	329	161619568	mocB	BCAN_A1667	-	rhizopine-binding protein precursor
1578	 57.31	0	1577750..1578754	-	334	161619569	-	BCAN_A1668	-	hypothetical protein
1579	 55.92	0	1578850..1580328	-	492	161619570	-	BCAN_A1669	-	ribose/galactose/methyl galactoside import ATP-binding protein 2
1580	 44.12	-2	1580377..1580478	-	33	161619571	-	BCAN_A1670	-	hypothetical protein
1581	 52.83	-1	1580624..1580941	+	105	161619572	-	BCAN_A1671	-	hypothetical protein
1582	 52.71	-1	1581071..1581199	-	42	161619573	-	BCAN_A1672	-	hypothetical protein
1583	 45.10	-2	1583607..1583759	+	50	161619574	-	BCAN_A1676	-	hypothetical protein
1584	 42.80	-2	1586714..1586956	+	80	161619575	-	BCAN_A1678	-	hypothetical protein
1585	 58.76	0	1589658..1590479	-	273	161619576	-	BCAN_A1682	-	regulatory protein IclR
1586	 58.82	0	1590597..1592048	+	483	161619577	-	BCAN_A1683	-	succinic semialdehyde dehydrogenase
1587	 58.38	0	1592165..1592755	+	196	161619578	-	BCAN_A1684	-	hypothetical protein
1588	 57.61	0	1592868..1593386	+	172	161619579	-	BCAN_A1685	-	disulfide bond formation protein B
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.