IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1269	 61.09	0	1268481..1269197	-	238	161619260	cbtA	BCAN_A1332	-	cobalt transporter subunit CbtA (proposed)
1270	 57.14	0	1269286..1269474	-	62	161619261	cbtB	BCAN_A1333	-	cobalt transporter subunit CbtB (proposed)
1271	 60.54	0	1269788..1271239	-	483	161619262	cobQ	BCAN_A1335	-	cobyric acid synthase
1272	 50.54	-1	1271250..1271435	-	61	161619263	-	BCAN_A1336	-	hypothetical protein
1273	 53.82	0	1271392..1271640	-	82	161619264	-	BCAN_A1337	-	hypothetical protein
1274	 60.49	0	1272704..1273594	+	296	161619265	mmsB	BCAN_A1339	-	3-hydroxyisobutyrate dehydrogenase
1275	 45.83	-2	1273830..1273997	-	55	161619266	-	BCAN_A1340	-	hypothetical protein
1276	 53.33	0	1273990..1274229	-	79	161619267	-	BCAN_A1341	-	entericidin EcnAB
1277	 57.56	0	1275671..1276669	+	332	161619268	-	BCAN_A1343	-	hypothetical protein
1278	 55.67	0	1279582..1279872	-	96	161619269	-	BCAN_A1345	-	hypothetical protein
1279	 56.41	0	1282683..1283267	-	194	161619270	-	BCAN_A1348	-	hypothetical protein
1280	 59.38	0	1283319..1285856	+	845	161619271	secD	BCAN_A1349	-	bifunctional preprotein translocase subunit SecD/SecF
1281	 59.30	0	1285934..1287793	+	619	161619272	-	BCAN_A1350	-	potassium efflux system protein
1282	 55.45	0	1287793..1288764	+	323	161619273	-	BCAN_A1351	-	hypothetical protein
1283	 60.89	0	1288991..1289596	+	201	161619274	-	BCAN_A1352	-	hypothetical protein
1284	 56.44	0	1289642..1290472	-	276	161619275	-	BCAN_A1353	-	sulfate ABC transporter, inner membrane subunit CysW
1285	 58.71	0	1290459..1291325	-	288	161619276	cysT	BCAN_A1354	-	sulfate ABC transporter, permease protein CysT
1286	 55.52	0	1291452..1292456	-	334	161619277	-	BCAN_A1355	-	sulfate ABC transporter, sulfate-binding protein
1287	 52.69	-1	1292722..1292907	-	61	161619278	-	BCAN_A1356	-	hypothetical protein
1288	 51.97	-1	1292737..1293015	+	92	161619279	-	BCAN_A1357	-	hypothetical protein
1289	 58.89	0	1293087..1294655	-	522	161619280	-	BCAN_A1358	-	integral membrane protein TerC
1290	 59.28	0	1295073..1295735	-	220	161619281	-	BCAN_A1359	-	SNARE associated Golgi protein
1291	 47.37	-2	1295725..1295838	+	37	161619282	-	BCAN_A1360	-	hypothetical protein
1292	 53.12	0	1295811..1295906	+	31	161619283	-	BCAN_A1361	-	hypothetical protein
1293	 53.52	0	1296633..1297172	+	179	161619284	-	BCAN_A1364	-	hypothetical protein
1294	 54.37	0	1297306..1297728	-	140	161619285	-	BCAN_A1365	-	RbsD or FucU transport
1295	 59.38	0	1297822..1298631	-	269	161619286	-	BCAN_A1366	-	short chain dehydrogenase
1296	 58.46	0	1298646..1299425	-	259	161619287	-	BCAN_A1367	-	hypothetical protein
1297	 59.84	0	1299439..1300566	-	375	161619288	-	BCAN_A1368	-	monosaccharide-transporting ATPase
1298	 59.89	0	1300853..1301782	-	309	161619289	-	BCAN_A1369	-	periplasmic binding protein/LacI transcriptional regulator
1299	 57.53	0	1302161..1303276	+	371	161619290	cbaC	BCAN_A1370	-	1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
1300	 61.90	+1	1303273..1304049	-	258	161619291	cbrD	BCAN_A1371	-	achromobactin transport ATP-binding protein CbrD
1301	 62.18	+1	1304046..1305047	-	333	161619292	-	BCAN_A1372	-	transport system permease protein
1302	 60.60	0	1305040..1305879	-	279	161619293	-	BCAN_A1373	-	periplasmic binding protein
1303	 56.47	0	1305893..1307755	-	620	161619294	-	BCAN_A1374	-	TonB-dependent receptor
1304	 53.21	0	1308044..1308199	-	51	161619295	-	BCAN_A1376	-	hypothetical protein
1305	 57.50	0	1308249..1309361	-	370	161619296	-	BCAN_A1377	-	ABC-2 type transporter
1306	 60.96	0	1312128..1313195	-	355	161619297	-	BCAN_A1379	-	HlyD family secretion protein
1307	 52.22	-1	1313175..1313354	+	59	161619298	-	BCAN_A1380	-	hypothetical protein
1308	 54.55	0	1313741..1315036	-	431	161619299	-	BCAN_A1381	-	hypothetical protein
1309	 54.80	0	1315615..1315791	-	58	161619300	-	BCAN_A1382	-	hypothetical protein
1310	 56.77	0	1315851..1316153	+	100	161619301	ureA	BCAN_A1383	-	urease subunit gamma
1311	 57.92	0	1316202..1316681	+	159	161619302	ureB	BCAN_A1384	-	urease subunit beta
1312	 59.18	0	1316721..1318442	+	573	161619303	ureC	BCAN_A1385	-	urease subunit alpha
1313	 58.75	0	1318490..1319095	+	201	161619304	ureE	BCAN_A1386	-	urease accessory protein UreE
1314	 58.88	0	1319067..1319798	+	243	161619305	ureF	BCAN_A1387	-	urease accessory protein ureF
1315	 56.49	0	1319814..1320452	+	212	161619306	ureG	BCAN_A1388	-	urease accessory protein UreG
1316	 57.87	0	1320452..1321360	+	302	161619307	ureD	BCAN_A1389	-	urease accessory protein ureD
1317	 60.30	0	1321370..1322422	+	350	161619308	-	BCAN_A1390	-	Urea transporter, kidney
1318	 57.31	0	1322449..1323207	+	252	161619309	-	BCAN_A1391	-	ABC cobalt transporter, periplasmic binding protein CbiN
1319	 61.79	+1	1323227..1323862	+	211	161619310	-	BCAN_A1392	-	cobalt transport protein CbiM
1320	 62.36	+1	1323859..1324485	+	208	161619311	-	BCAN_A1393	-	CbiL protein
1321	 60.00	0	1324482..1325246	+	254	161619312	cbiQ	BCAN_A1394	-	cobalt ABC transporter, permease protein CbiQ
1322	 57.08	0	1325243..1325962	+	239	161619313	-	BCAN_A1395	-	hypothetical protein
1323	 57.69	0	1325908..1327188	+	426	161619314	-	BCAN_A1396	-	hypothetical protein
1324	 57.56	0	1325983..1326795	-	270	161619315	crcB	BCAN_A1397	-	camphor resistance protein CrcB
1325	 56.67	0	1326808..1327197	-	129	161619316	crcB	BCAN_A1398	-	camphor resistance protein CrcB
1326	 56.43	0	1327466..1328491	+	341	161619317	-	BCAN_A1399	-	hypothetical protein
1327	 52.43	-1	1328498..1329094	+	198	161619318	-	BCAN_A1400	-	hypothetical protein
1328	 51.95	-1	1328624..1329058	-	144	161619319	-	BCAN_A1401	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1329	 47.83	-2	1329060..1329197	+	45	161619320	-	BCAN_A1402	-	hypothetical protein
1330	 57.93	0	1329210..1330136	-	308	161619321	-	BCAN_A1403	-	PhzF family phenazine biosynthesis protein
1331	 58.88	0	1330241..1330972	-	243	161619322	-	BCAN_A1404	-	NUDIX hydrolase
1332	 55.04	0	1332173..1332688	+	171	161619323	-	BCAN_A1408	-	BA14K family protein
1333	 57.34	0	1332734..1333966	-	410	161619324	-	BCAN_A1409	-	GntR family transcriptional regulator
1334	 50.00	-1	1334048..1334329	-	93	161619325	-	BCAN_A1410	-	hypothetical protein
1335	 58.04	0	1334351..1335370	-	339	161619326	ilvC	BCAN_A1411	-	ketol-acid reductoisomerase
1336	 60.12	0	1335426..1336067	-	213	161619327	-	BCAN_A1412	-	TetR family transcriptional regulator
1337	 46.79	-2	1336125..1336280	+	51	161619328	-	BCAN_A1413	-	hypothetical protein
1338	 58.13	0	1336277..1338232	-	651	161619329	kup	BCAN_A1414	-	potassium transport system protein kup
1339	 57.23	0	1338375..1338533	-	52	161619330	-	BCAN_A1415	-	hypothetical protein
1340	 59.51	0	1338602..1339342	-	246	161619331	pdxJ	BCAN_A1416	-	pyridoxal phosphate biosynthetic protein PdxJ
1341	 53.48	0	1339639..1340040	+	133	161619332	-	BCAN_A1417	-	hypothetical protein
1342	 57.93	0	1340041..1341207	-	388	161619333	-	BCAN_A1418	-	hypothetical protein
1343	 52.38	-1	1341161..1341307	+	48	161619334	-	BCAN_A1419	-	hypothetical protein
1344	 58.46	0	1341346..1341918	-	190	161619335	ilvN	BCAN_A1420	-	acetolactate synthase 3 regulatory subunit
1345	 58.50	0	1341937..1343760	-	607	161619336	ilvB	BCAN_A1421	-	acetolactate synthase 3 catalytic subunit
1346	 59.38	0	1344008..1344940	-	310	161619337	miaA	BCAN_A1422	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1347	 60.22	0	1344958..1345857	+	299	161619338	serB	BCAN_A1423	-	phosphoserine phosphatase SerB
1348	 59.14	0	1345898..1347079	-	393	161619339	-	BCAN_A1424	-	hypothetical protein
1349	 53.47	0	1347055..1347198	-	47	161619340	-	BCAN_A1425	-	hypothetical protein
1350	 58.67	0	1347209..1348783	-	524	161619341	degP	BCAN_A1426	-	protease Do
1351	 59.68	0	1349007..1349192	-	61	161619342	-	BCAN_A1427	-	hypothetical protein
1352	 60.13	0	1349213..1350115	-	300	161619343	-	BCAN_A1428	-	HflC protein
1353	 58.90	0	1350115..1351311	-	398	161619344	hflK	BCAN_A1429	-	HflK protein
1354	 57.61	0	1351388..1351906	-	172	161619345	-	BCAN_A1430	-	dihydrofolate reductase type 3
1355	 55.35	0	1351909..1352703	-	264	161619346	thyA	BCAN_A1431	-	thymidylate synthase
1356	 57.69	0	1352804..1353115	-	103	161619347	-	BCAN_A1432	-	hypothetical protein
1357	 47.62	-2	1353543..1353584	+	13	161619348	-	BCAN_A1433	-	tmRNA tag peptide
1358	 60.40	0	1353688..1354899	-	403	161619349	-	BCAN_A1434	-	Bcr/CflA subfamily drug resistance transporter
1359	 51.70	-1	1354916..1355062	-	48	161619350	-	BCAN_A1435	-	hypothetical protein
1360	 56.94	0	1355293..1355919	+	208	161619351	-	BCAN_A1436	-	TetR family transcriptional regulator
1361	 53.86	0	1356000..1356569	+	189	161619352	-	BCAN_A1437	-	hypothetical protein
1362	 54.80	0	1356682..1356858	+	58	161619353	-	BCAN_A1438	-	hypothetical protein
1363	 52.24	-1	1356950..1357150	+	66	161619354	-	BCAN_A1439	-	hypothetical protein
1364	 57.54	0	1357147..1357398	+	83	161619355	-	BCAN_A1440	-	hypothetical protein
1365	 60.20	0	1357426..1361169	-	1247	161619356	-	BCAN_A1441	-	AsmA family protein
1366	 48.23	-2	1361224..1361364	-	46	161619357	-	BCAN_A1442	-	hypothetical protein
1367	 59.49	0	1361361..1362767	-	468	161619358	-	BCAN_A1443	-	hypothetical protein
1368	 60.39	0	1362792..1363301	-	169	161619359	-	BCAN_A1444	-	hypothetical protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.