IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1078	 59.35	0	1093392..1094867	-	491	161619069	ntrC	BCAN_A1136	-	nitrogen regulation protein NR(I)
1079	 59.58	0	1094864..1096006	-	380	161619070	ntrB	BCAN_A1137	-	nitrogen regulation protein ntrB
1080	 58.58	0	1096006..1097007	-	333	161619071	-	BCAN_A1138	-	NifR3 family TIM-barrel protein
1081	 57.82	0	1097019..1098374	+	451	161619072	ispF	BCAN_A1139	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1082	 59.44	0	1098371..1098868	+	165	161619073	-	BCAN_A1140	-	competence/damage inducible protein CinA
1083	 57.49	0	1098945..1099685	+	246	161619074	bacC	BCAN_A1141	-	bacilysin biosynthesis oxidoreductase bacC
1084	 53.16	0	1099743..1100201	-	152	161619075	-	BCAN_A1142	-	cyclase/dehydrase
1085	 56.45	0	1100207..1101175	-	322	161619076	lipA	BCAN_A1143	-	lipoyl synthase
1086	 64.81	+1	1101285..1101446	-	53	161619077	-	BCAN_A1144	-	hypothetical protein
1087	 58.81	0	1101565..1103028	-	487	161619078	lpdA	BCAN_A1145	-	dihydrolipoamide dehydrogenase
1088	 59.52	0	1103111..1104454	-	447	161619079	-	BCAN_A1146	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1089	 57.50	0	1104472..1105857	-	461	161619080	-	BCAN_A1147	-	pyruvate dehydrogenase subunit beta
1090	 55.81	0	1105876..1106916	-	346	161619081	-	BCAN_A1148	-	dehydrogenase E1 component
1091	 49.70	-1	1107055..1107384	-	109	161619082	-	BCAN_A1149	-	septum formation initiator
1092	 49.66	-1	1107656..1108237	-	193	161619083	-	BCAN_A1150	-	hypothetical protein
1093	 57.51	0	1108574..1109851	-	425	161619084	eno	BCAN_A1151	-	phosphopyruvate hydratase
1094	 57.07	0	1110038..1110871	-	277	161619085	kdsA	BCAN_A1152	-	2-dehydro-3-deoxyphosphooctonate aldolase
1095	 55.68	0	1110977..1112605	-	542	161619086	pyrG	BCAN_A1153	-	CTP synthetase
1096	 46.34	-2	1112618..1112740	-	40	161619087	-	BCAN_A1154	-	hypothetical protein
1097	 57.29	0	1112875..1113567	-	230	161619088	-	BCAN_A1155	-	ErfK/YbiS/YcfS/YnhG family protein
1098	 63.31	+1	1113821..1114267	-	148	161619089	secG	BCAN_A1156	-	preprotein translocase subunit SecG
1099	 59.61	0	1114367..1115131	-	254	161619090	tpiA	BCAN_A1157	-	triosephosphate isomerase
1100	 59.30	0	1115350..1117236	+	628	161619091	-	BCAN_A1158	-	rotamase family protein
1101	 61.57	+1	1117251..1118270	+	339	161619092	trpD	BCAN_A1159	-	anthranilate phosphoribosyltransferase
1102	 58.36	0	1118287..1119093	+	268	161619093	trpC	BCAN_A1160	-	indole-3-glycerol-phosphate synthase
1103	 60.24	0	1119090..1119587	+	165	161619094	moaC	BCAN_A1161	-	molybdenum cofactor biosynthesis protein C
1104	 60.91	0	1119683..1120897	+	404	161619095	-	BCAN_A1162	-	molybdenum cofactor synthesis domain-containing protein
1105	 57.81	0	1121145..1121867	+	240	161619096	lexA	BCAN_A1163	-	LexA repressor
1106	 57.42	0	1121861..1124392	-	843	161619097	-	BCAN_A1164	-	ComEC/Rec2-related protein
1107	 53.67	0	1124424..1124600	-	58	161619098	-	BCAN_A1165	-	hypothetical protein
1108	 60.13	0	1124613..1126034	+	473	161619099	gltX	BCAN_A1166	-	glutamyl-tRNA synthetase
1109	 57.31	0	1126263..1127555	+	430	161619100	gltA	BCAN_A1167	-	type II citrate synthase
1110	 57.91	0	1127728..1128915	-	395	161619101	lpxB	BCAN_A1168	-	lipid-A-disaccharide synthase
1111	 58.58	0	1128912..1129814	-	300	161619102	-	BCAN_A1169	-	hypothetical protein
1112	 57.47	0	1129795..1130631	-	278	161619103	lpxA	BCAN_A1170	-	UDP-N-acetylglucosamine acyltransferase
1113	 54.01	0	1130640..1131113	-	157	161619104	fabZ	BCAN_A1171	-	(3R)-hydroxymyristoyl-ACP dehydratase
1114	 58.43	0	1131106..1132161	-	351	161619105	lpxD	BCAN_A1172	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1115	 54.43	0	1132215..1134560	-	781	161619106	yaeT	BCAN_A1173	-	Outer membrane protein assembly factor yaeT precursor
1116	 57.11	0	1134896..1136035	-	379	161619107	-	BCAN_A1174	-	membrane-associated zinc metalloprotease
1117	 58.92	0	1136102..1136914	-	270	161619108	cdsA	BCAN_A1175	-	phosphatidate cytidylyltransferase
1118	 59.74	0	1137019..1137783	-	254	161619109	uppS	BCAN_A1176	-	undecaprenyl diphosphate synthase
1119	 58.11	0	1137828..1138388	-	186	161619110	frr	BCAN_A1177	-	ribosome recycling factor
1120	 57.61	0	1138424..1139395	-	323	161619111	pyrH	BCAN_A1178	-	uridylate kinase
1121	 59.80	0	1139313..1140230	-	305	161619112	tsf	BCAN_A1179	-	elongation factor Ts
1122	 59.40	0	1140420..1141190	-	256	161619113	rpsB	BCAN_A1180	-	30S ribosomal protein S2
1123	 51.72	-1	1141413..1141907	-	164	161619114	-	BCAN_A1181	-	hypothetical protein
1124	 53.74	0	1142019..1142861	-	280	161619115	-	BCAN_A1182	-	hypothetical protein
1125	 58.28	0	1143005..1143469	+	154	161619116	-	BCAN_A1183	-	endoribonuclease L-PSP
1126	 57.49	0	1143471..1144211	+	246	161619117	-	BCAN_A1184	-	glycerophosphoryl diester phosphodiesterase
1127	 54.88	0	1144266..1145453	+	395	161619118	-	BCAN_A1185	-	hypothetical protein
1128	 53.43	0	1145525..1145947	+	140	161619119	-	BCAN_A1186	-	hypothetical protein
1129	 57.62	0	1146054..1148528	-	824	161619120	clpA	BCAN_A1187	-	ATP-dependent Clp protease ATP-binding subunit clpA
1130	 52.42	-1	1148535..1148885	-	116	161619121	clpS	BCAN_A1188	-	ATP-dependent Clp protease adaptor protein ClpS
1131	 56.25	0	1148946..1149137	+	63	161619122	-	BCAN_A1189	-	hypothetical protein
1132	 61.38	+1	1149371..1150789	+	472	161619123	-	BCAN_A1190	-	Serine-type D-Ala-D-Ala carboxypeptidase
1133	 59.36	0	1150821..1151162	+	113	161619124	-	BCAN_A1191	-	hypothetical protein
1134	 61.05	0	1150914..1151198	-	94	161619125	-	BCAN_A1192	-	hypothetical protein
1135	 58.68	0	1151276..1151713	-	145	161619126	-	BCAN_A1193	-	hypothetical protein
1136	 59.35	0	1151778..1153307	+	509	161619127	-	BCAN_A1194	-	hypothetical protein
1137	 59.26	0	1151802..1153205	-	467	161619128	sdaA	BCAN_A1195	-	L-serine ammonia-lyase
1138	 50.79	-1	1153403..1153528	-	41	161619129	-	BCAN_A1196	-	hypothetical protein
1139	 55.97	0	1153727..1154521	-	264	161619130	-	BCAN_A1197	-	hypothetical protein
1140	 58.36	0	1154696..1155682	+	328	161619131	-	BCAN_A1198	-	hypothetical protein
1141	 55.81	0	1155693..1156079	-	128	161619132	-	BCAN_A1199	-	hypothetical protein
1142	 54.92	0	1156317..1156682	+	121	161619133	-	BCAN_A1200	-	hypothetical protein
1143	 59.77	0	1156697..1157044	+	115	161619134	-	BCAN_A1201	-	hypothetical protein
1144	 55.56	0	1157115..1157429	+	104	161619135	-	BCAN_A1202	-	protein of unknown function DUF883 ElaB
1145	 49.46	-1	1157486..1157578	+	30	161619136	-	BCAN_A1203	-	hypothetical protein
1146	 57.48	0	1157874..1158341	+	155	161619137	queF	BCAN_A1204	-	7-cyano-7-deazaguanine reductase
1147	 48.00	-2	1158345..1158494	-	49	161619138	-	BCAN_A1205	-	hypothetical protein
1148	 59.32	0	1158472..1158648	+	58	161619139	-	BCAN_A1206	-	hypothetical protein
1149	 53.96	0	1158680..1159222	+	180	161619140	-	BCAN_A1207	-	hypothetical protein
1150	 57.96	0	1159225..1160637	-	470	161619141	-	BCAN_A1208	-	hypothetical protein
1151	 59.26	0	1160801..1161556	+	251	161619142	pccB	BCAN_A1209	-	propionyl-CoA carboxylase beta chain
1152	 48.57	-2	1161526..1161630	+	34	161619143	-	BCAN_A1210	-	hypothetical protein
1153	 59.63	0	1161641..1163644	+	667	161619144	-	BCAN_A1211	-	propionyl-coenzyme A carboxylase, alpha polypeptide
1154	 58.81	0	1163705..1165843	+	712	161619145	-	BCAN_A1212	-	methylmalonyl-CoA mutase
1155	 56.20	0	1165950..1166312	-	120	161619146	-	BCAN_A1213	-	hypothetical protein
1156	 57.15	0	1166499..1168547	-	682	161619147	-	BCAN_A1214	-	TRAP transporter, 4TM/12TM fusion protein
1157	 51.70	-1	1168588..1168734	-	48	161619148	-	BCAN_A1215	-	hypothetical protein
1158	 57.68	0	1168784..1169773	-	329	161619149	-	BCAN_A1216	-	TRAP transporter solute receptor TAXI family protein
1159	 57.55	0	1169919..1170752	-	277	161619150	murI	BCAN_A1217	-	glutamate racemase
1160	 57.52	0	1170749..1171579	-	276	161619151	-	BCAN_A1218	-	RNA methyltransferase
1161	 58.29	0	1171759..1172343	+	194	161619152	-	BCAN_A1219	-	PfpI family intracellular peptidase
1162	 58.15	0	1172432..1172842	+	136	161619153	-	BCAN_A1220	-	hypothetical protein
1163	 57.28	0	1172970..1174184	+	404	161619154	-	BCAN_A1221	-	isocitrate dehydrogenase
1164	 58.09	0	1174406..1175851	+	481	161619155	phoA	BCAN_A1222	-	bacterial alkaline phosphatase
1165	 58.77	0	1176003..1178660	-	885	161619156	alaS	BCAN_A1223	-	alanyl-tRNA synthetase
1166	 57.00	0	1179053..1180138	-	361	161619157	recA	BCAN_A1224	-	recombinase A
1167	 49.21	-1	1180308..1180433	-	41	161619158	-	BCAN_A1225	-	hypothetical protein
1168	 59.58	0	1180469..1181131	-	220	161619159	-	BCAN_A1226	-	OmpA/MotB domain-containing protein
1169	 56.07	0	1181218..1181802	-	194	161619160	-	BCAN_A1227	-	lytic transglycosylase catalytic
1170	 59.89	0	1181926..1183239	-	437	161619161	-	BCAN_A1228	-	recombination factor protein RarA
1171	 59.09	0	1183386..1184810	-	474	161619162	degP	BCAN_A1229	-	protease Do
1172	 58.04	0	1185090..1185518	-	142	161619163	rplQ	BCAN_A1230	-	50S ribosomal protein L17
1173	 57.10	0	1185680..1186693	-	337	161619164	rpoA	BCAN_A1231	-	DNA-directed RNA polymerase subunit alpha
1174	 61.79	+1	1186809..1187198	-	129	161619165	rpsK	BCAN_A1232	-	30S ribosomal protein S11
1175	 56.91	0	1187326..1187694	-	122	161619166	rpsM	BCAN_A1233	-	30S ribosomal protein S13
1176	 49.43	-1	1187688..1187861	+	57	161619167	-	BCAN_A1234	-	hypothetical protein
1177	 58.97	0	1188004..1188588	-	194	161619168	-	BCAN_A1235	-	adenylate kinase
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.