IslandPathversion 1.0

IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.15 STD DEV: 4.17
Brucella canis ATCC 23365 chromosome I, complete sequence - 1..2105969
2102 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1029	 57.47	0	1038414..1039424	+	336	161619020	-	BCAN_A1085	-	hypothetical protein
1030	 56.55	0	1039479..1041455	-	658	161619021	thrS	BCAN_A1086	-	threonyl-tRNA synthetase
1031	 57.91	0	1041670..1042902	-	410	161619022	-	BCAN_A1087	-	Serine-type D-Ala-D-Ala carboxypeptidase
1032	 59.79	0	1043009..1043488	-	159	161619023	-	BCAN_A1088	-	hypothetical protein
1033	 57.37	0	1043382..1043822	-	146	161619024	-	BCAN_A1089	-	NifU domain-containing protein
1034	 57.01	0	1044086..1044727	+	213	161619025	folE	BCAN_A1090	-	GTP cyclohydrolase I
1035	 57.14	0	1044750..1045169	+	139	161619026	hisI	BCAN_A1091	-	phosphoribosyl-AMP cyclohydrolase
1036	 59.28	0	1045386..1046333	+	315	161619027	-	BCAN_A1092	-	patatin
1037	 40.00	-2	1046420..1046599	+	59	161619028	-	BCAN_A1093	-	hypothetical protein
1038	 53.98	0	1046808..1048052	+	414	161619029	-	BCAN_A1095	-	site-specific recombinase, phage integrase family protein
1039	 53.33	0	1048191..1048595	+	134	161619030	-	BCAN_A1096	-	hypothetical protein
1040	 54.79	0	1050279..1051676	-	465	161619031	-	BCAN_A1097	-	hypothetical protein
1041	 58.25	0	1052201..1052830	-	209	161619032	cin	BCAN_A1098	-	DNA-invertase
1042	 52.63	-1	1053273..1053386	-	37	161619033	-	BCAN_A1099	-	hypothetical protein
1043	 55.03	0	1053945..1054520	-	191	161619034	-	BCAN_A1100	-	BRO domain-containing protein
1044	 56.81	0	1055047..1056192	-	381	161619035	-	BCAN_A1102	-	acyl-CoA transferase
1045	 56.88	0	1056271..1057455	-	394	161619036	acdA	BCAN_A1103	-	Acyl-CoA dehydrogenase
1046	 58.63	0	1057557..1058489	+	310	161619037	-	BCAN_A1104	-	LysR family transcriptional regulator
1047	 59.15	0	1058459..1059442	-	327	161619038	-	BCAN_A1105	-	luciferase family protein
1048	 57.22	0	1059523..1062612	-	1029	161619039	-	BCAN_A1106	-	acriflavin resistance protein
1049	 57.45	0	1062622..1063803	-	393	161619040	-	BCAN_A1107	-	RND family efflux transporter MFP subunit
1050	 54.32	0	1063911..1064477	+	188	161619041	-	BCAN_A1108	-	TetR family transcriptional regulator
1051	 58.91	0	1064514..1065647	-	377	161619042	tgt	BCAN_A1109	-	queuine tRNA-ribosyltransferase
1052	 58.42	0	1065644..1066735	-	363	161619043	queA	BCAN_A1110	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1053	 59.57	0	1066857..1067363	-	168	161619044	-	BCAN_A1111	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1054	 56.01	0	1067426..1068016	-	196	161619045	-	BCAN_A1112	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1055	 55.56	0	1068037..1068531	-	164	161619046	coaD	BCAN_A1113	-	phosphopantetheine adenylyltransferase
1056	 47.93	-2	1068268..1068726	+	152	161619047	-	BCAN_A1114	-	hypothetical protein
1057	 52.67	-1	1068726..1068875	+	49	161619048	-	BCAN_A1115	-	hypothetical protein
1058	 55.00	0	1068747..1068986	-	79	161619049	-	BCAN_A1116	-	hypothetical protein
1059	 58.90	0	1069042..1071810	-	922	161619050	gyrA	BCAN_A1117	-	DNA gyrase subunit A
1060	 56.51	0	1072098..1072727	+	209	161619051	-	BCAN_A1118	-	hypothetical protein
1061	 56.13	0	1072818..1073396	-	192	161619052	phnN	BCAN_A1119	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1062	 54.86	0	1073583..1074344	+	253	161619053	phnF	BCAN_A1120	-	phosphonates metabolism transcriptional regulator PhnF
1063	 56.03	0	1074695..1074835	+	46	161619054	-	BCAN_A1121	-	hypothetical protein
1064	 56.61	0	1075029..1075535	-	168	161619055	ssb	BCAN_A1122	-	single-strand binding protein
1065	 54.23	0	1076103..1076303	+	66	161619056	-	BCAN_A1123	-	hypothetical protein
1066	 58.39	0	1076434..1079358	+	974	161619057	uvrA	BCAN_A1124	-	excinuclease ABC subunit A
1067	 60.51	0	1079544..1079819	-	91	161619058	-	BCAN_A1125	-	DNA-binding protein HRL18
1068	 56.83	0	1080000..1082438	-	812	161619059	lon	BCAN_A1126	-	ATP-dependent protease La
1069	 56.24	0	1082870..1084144	-	424	161619060	clpX	BCAN_A1127	-	ATP-dependent protease ATP-binding subunit
1070	 56.51	0	1084526..1085155	-	209	161619061	clpP	BCAN_A1128	-	ATP-dependent Clp protease proteolytic subunit
1071	 59.62	0	1085260..1086678	-	472	161619062	-	BCAN_A1129	-	GTP-binding protein HSR1-related
1072	 45.57	-2	1086869..1087105	-	78	161619063	hfq	BCAN_A1130	-	RNA-binding protein Hfq
1073	 48.33	-2	1087111..1087350	-	79	161619064	-	BCAN_A1131	-	hypothetical protein
1074	 51.62	-1	1087334..1088164	-	276	161619065	-	BCAN_A1132	-	hypothetical protein
1075	 56.06	0	1088213..1089589	-	458	161619066	-	BCAN_A1133	-	potassium transporter peripheral membrane component
1076	 60.28	0	1089614..1090975	-	453	161619067	ntrX	BCAN_A1134	-	nitrogen assimilation regulatory protein ntrX
1077	 57.16	0	1090977..1093301	-	774	161619068	-	BCAN_A1135	-	PAS domain-containing protein
1078	 59.35	0	1093392..1094867	-	491	161619069	ntrC	BCAN_A1136	-	nitrogen regulation protein NR(I)
1079	 59.58	0	1094864..1096006	-	380	161619070	ntrB	BCAN_A1137	-	nitrogen regulation protein ntrB
1080	 58.58	0	1096006..1097007	-	333	161619071	-	BCAN_A1138	-	NifR3 family TIM-barrel protein
1081	 57.82	0	1097019..1098374	+	451	161619072	ispF	BCAN_A1139	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1082	 59.44	0	1098371..1098868	+	165	161619073	-	BCAN_A1140	-	competence/damage inducible protein CinA
1083	 57.49	0	1098945..1099685	+	246	161619074	bacC	BCAN_A1141	-	bacilysin biosynthesis oxidoreductase bacC
1084	 53.16	0	1099743..1100201	-	152	161619075	-	BCAN_A1142	-	cyclase/dehydrase
1085	 56.45	0	1100207..1101175	-	322	161619076	lipA	BCAN_A1143	-	lipoyl synthase
1086	 64.81	+1	1101285..1101446	-	53	161619077	-	BCAN_A1144	-	hypothetical protein
1087	 58.81	0	1101565..1103028	-	487	161619078	lpdA	BCAN_A1145	-	dihydrolipoamide dehydrogenase
1088	 59.52	0	1103111..1104454	-	447	161619079	-	BCAN_A1146	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1089	 57.50	0	1104472..1105857	-	461	161619080	-	BCAN_A1147	-	pyruvate dehydrogenase subunit beta
1090	 55.81	0	1105876..1106916	-	346	161619081	-	BCAN_A1148	-	dehydrogenase E1 component
1091	 49.70	-1	1107055..1107384	-	109	161619082	-	BCAN_A1149	-	septum formation initiator
1092	 49.66	-1	1107656..1108237	-	193	161619083	-	BCAN_A1150	-	hypothetical protein
1093	 57.51	0	1108574..1109851	-	425	161619084	eno	BCAN_A1151	-	phosphopyruvate hydratase
1094	 57.07	0	1110038..1110871	-	277	161619085	kdsA	BCAN_A1152	-	2-dehydro-3-deoxyphosphooctonate aldolase
1095	 55.68	0	1110977..1112605	-	542	161619086	pyrG	BCAN_A1153	-	CTP synthetase
1096	 46.34	-2	1112618..1112740	-	40	161619087	-	BCAN_A1154	-	hypothetical protein
1097	 57.29	0	1112875..1113567	-	230	161619088	-	BCAN_A1155	-	ErfK/YbiS/YcfS/YnhG family protein
1098	 63.31	+1	1113821..1114267	-	148	161619089	secG	BCAN_A1156	-	preprotein translocase subunit SecG
1099	 59.61	0	1114367..1115131	-	254	161619090	tpiA	BCAN_A1157	-	triosephosphate isomerase
1100	 59.30	0	1115350..1117236	+	628	161619091	-	BCAN_A1158	-	rotamase family protein
1101	 61.57	+1	1117251..1118270	+	339	161619092	trpD	BCAN_A1159	-	anthranilate phosphoribosyltransferase
1102	 58.36	0	1118287..1119093	+	268	161619093	trpC	BCAN_A1160	-	indole-3-glycerol-phosphate synthase
1103	 60.24	0	1119090..1119587	+	165	161619094	moaC	BCAN_A1161	-	molybdenum cofactor biosynthesis protein C
1104	 60.91	0	1119683..1120897	+	404	161619095	-	BCAN_A1162	-	molybdenum cofactor synthesis domain-containing protein
1105	 57.81	0	1121145..1121867	+	240	161619096	lexA	BCAN_A1163	-	LexA repressor
1106	 57.42	0	1121861..1124392	-	843	161619097	-	BCAN_A1164	-	ComEC/Rec2-related protein
1107	 53.67	0	1124424..1124600	-	58	161619098	-	BCAN_A1165	-	hypothetical protein
1108	 60.13	0	1124613..1126034	+	473	161619099	gltX	BCAN_A1166	-	glutamyl-tRNA synthetase
1109	 57.31	0	1126263..1127555	+	430	161619100	gltA	BCAN_A1167	-	type II citrate synthase
1110	 57.91	0	1127728..1128915	-	395	161619101	lpxB	BCAN_A1168	-	lipid-A-disaccharide synthase
1111	 58.58	0	1128912..1129814	-	300	161619102	-	BCAN_A1169	-	hypothetical protein
1112	 57.47	0	1129795..1130631	-	278	161619103	lpxA	BCAN_A1170	-	UDP-N-acetylglucosamine acyltransferase
1113	 54.01	0	1130640..1131113	-	157	161619104	fabZ	BCAN_A1171	-	(3R)-hydroxymyristoyl-ACP dehydratase
1114	 58.43	0	1131106..1132161	-	351	161619105	lpxD	BCAN_A1172	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1115	 54.43	0	1132215..1134560	-	781	161619106	yaeT	BCAN_A1173	-	Outer membrane protein assembly factor yaeT precursor
1116	 57.11	0	1134896..1136035	-	379	161619107	-	BCAN_A1174	-	membrane-associated zinc metalloprotease
1117	 58.92	0	1136102..1136914	-	270	161619108	cdsA	BCAN_A1175	-	phosphatidate cytidylyltransferase
1118	 59.74	0	1137019..1137783	-	254	161619109	uppS	BCAN_A1176	-	undecaprenyl diphosphate synthase
1119	 58.11	0	1137828..1138388	-	186	161619110	frr	BCAN_A1177	-	ribosome recycling factor
1120	 57.61	0	1138424..1139395	-	323	161619111	pyrH	BCAN_A1178	-	uridylate kinase
1121	 59.80	0	1139313..1140230	-	305	161619112	tsf	BCAN_A1179	-	elongation factor Ts
1122	 59.40	0	1140420..1141190	-	256	161619113	rpsB	BCAN_A1180	-	30S ribosomal protein S2
1123	 51.72	-1	1141413..1141907	-	164	161619114	-	BCAN_A1181	-	hypothetical protein
1124	 53.74	0	1142019..1142861	-	280	161619115	-	BCAN_A1182	-	hypothetical protein
1125	 58.28	0	1143005..1143469	+	154	161619116	-	BCAN_A1183	-	endoribonuclease L-PSP
1126	 57.49	0	1143471..1144211	+	246	161619117	-	BCAN_A1184	-	glycerophosphoryl diester phosphodiesterase
1127	 54.88	0	1144266..1145453	+	395	161619118	-	BCAN_A1185	-	hypothetical protein
1128	 53.43	0	1145525..1145947	+	140	161619119	-	BCAN_A1186	-	hypothetical protein
57.15	MEAN

4.17	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.