IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.60   STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
827	 58.47	0	900477..901892	-	471	189024095	-	BAbS19_I08680	-	Zinc metalloprotease
828	 59.36	0	902084..903247	+	387	189024096	-	BAbS19_I08690	-	1-aminocyclopropane-1-carboxylate synthase
829	 58.83	0	903366..906134	-	922	189024097	-	BAbS19_I08700	-	Ribonuclease E and G
830	 56.90	0	906813..908081	+	422	189024098	-	BAbS19_I08710	-	Cell wall hydrolase/autolysin
831	 58.29	0	908361..910820	+	819	189024099	-	BAbS19_I08720	-	Glycosyl transferase, family 51
832	 57.76	0	911124..912089	+	321	189024100	-	BAbS19_I08730	-	Peptide chain release factor 2
833	 42.11	-2	912148..912261	-	37	189024101	-	BAbS19_I08740	-	hypothetical protein
834	 58.81	0	912283..912651	+	122	189024102	-	BAbS19_I08750	-	Transposase
835	 50.92	-1	912768..913040	+	90	189024103	-	BAbS19_I08760	-	Transposase, IS4
836	 52.94	-1	913094..913195	-	33	189024104	-	BAbS19_I08770	-	hypothetical protein
837	 61.71	+1	913192..913554	-	120	189024105	-	BAbS19_I08780	-	hypothetical protein
838	 57.00	0	913725..914552	-	275	189024106	-	BAbS19_I08790	-	Protein of unknown function DUF455
839	 56.13	0	914574..915038	-	154	189024107	-	BAbS19_I08800	-	Alkyl hydroperoxide reductase
840	 56.50	0	915283..918723	+	1146	189024108	-	BAbS19_I08810	-	RNA-binding region RNP-1 (RNA recognition motif)
841	 58.37	0	918782..920035	-	417	189024109	-	BAbS19_I08820	-	tyrosyl-tRNA synthetase
842	 60.52	0	920151..921272	+	373	189024110	-	BAbS19_I08830	-	hypothetical protein
843	 55.56	0	921269..921601	-	110	189024111	-	BAbS19_I08840	-	Small multidrug resistance protein
844	 57.48	0	921713..922387	-	224	189024112	-	BAbS19_I08850	-	Esterase/lipase/thioesterase, active site
845	 58.47	0	922478..923770	+	430	189024113	-	BAbS19_I08860	-	Aminotransferase, class V
846	 55.91	0	923951..925474	+	507	189024114	-	BAbS19_I08870	-	hypothetical protein
847	 55.95	0	925542..926297	+	251	189024115	-	BAbS19_I08880	-	ABC transporter
848	 59.31	0	926311..927588	+	425	189024116	-	BAbS19_I08890	-	hypothetical protein
849	 55.58	0	927670..928914	+	414	189024117	-	BAbS19_I08900	-	Aminotransferase, class V
850	 57.62	0	928911..929330	+	139	189024118	-	BAbS19_I08910	-	Protein of unknown function DUF59
851	 51.65	-1	929364..930335	-	323	189024119	-	BAbS19_I08920	-	Glycosyl transferase, family 2
852	 54.52	0	930762..931535	+	257	189024120	-	BAbS19_I08930	-	ATP-NAD kinase
853	 57.83	0	931863..933311	+	482	189024121	-	BAbS19_I08940	-	ATP-dependent RNA helicase, DEAD/DEAH box family
854	 56.41	0	933548..934015	-	155	189024122	-	BAbS19_I08950	-	HESB protein
855	 53.22	-1	934121..934291	+	56	189024123	-	BAbS19_I08960	-	hypothetical protein
856	 56.48	0	934530..934637	+	35	189024124	-	BAbS19_I08970	-	hypothetical protein
857	 59.70	0	934718..934918	+	66	189024125	-	BAbS19_I08980	-	Heavy metal transport/detoxification protein
858	 56.05	0	935245..935913	+	222	189024126	-	BAbS19_I08990	-	Protein-L-isoaspartate O-methyltransferase
859	 59.16	0	936064..937422	+	452	189024127	-	BAbS19_I09000	-	Outer membrane efflux protein
860	 58.06	0	937672..938403	+	243	189024128	-	BAbS19_I09010	-	hypothetical protein
861	 57.15	0	938694..941426	+	910	189024129	-	BAbS19_I09020	-	valyl-tRNA synthetase
862	 52.92	-1	941817..943118	+	433	189024130	-	BAbS19_I09030	-	Outer membrane protein E
863	 56.55	0	944298..944831	-	177	189024131	-	BAbS19_I09060	-	Arginine/ornithine-binding periplasmic protein precursor
864	 52.53	-1	945176..945649	-	157	189024132	-	BAbS19_I09070	-	Rhodopsin-like GPCR superfamily
865	 54.20	0	945675..946340	-	221	189024133	-	BAbS19_I09080	-	molybdopterin-guanine dinucleotide biosynthesis protein A
866	 58.26	0	946516..947550	-	344	189024134	-	BAbS19_I09090	-	MoaA/nifB/pqqE family protein
867	 55.28	0	947737..948096	+	119	189024135	-	BAbS19_I09100	-	hypothetical protein
868	 57.42	0	948164..948736	-	190	189024136	-	BAbS19_I09110	-	Salicylate hydroxylase
869	 58.33	0	949615..951234	-	539	189024137	-	BAbS19_I09120	-	Fumarate hydratase class I, aerobic
870	 53.97	-1	954344..954595	-	83	189024138	-	BAbS19_I09150	-	Transglycosylase-associated protein
871	 50.78	-1	955104..956129	-	341	189024139	-	BAbS19_I09160	-	Phage integrase
872	 57.12	0	956304..957350	+	348	189024140	-	BAbS19_I09170	-	hypothetical protein
873	 51.52	-1	957502..957732	+	76	189024141	-	BAbS19_I09180	-	hypothetical protein
874	 57.61	0	957729..958004	+	91	189024142	-	BAbS19_I09190	-	hypothetical protein
875	 56.17	0	958180..958503	+	107	189024143	-	BAbS19_I09200	-	hypothetical protein
876	 54.59	0	958849..959055	+	68	189024144	-	BAbS19_I09210	-	outer membrane protein, putative
877	 55.56	0	960424..960738	-	104	189024145	-	BAbS19_I09220	-	hypothetical protein
878	 47.66	-2	960738..961058	-	106	189024146	-	BAbS19_I09230	-	hypothetical protein
879	 58.04	0	961245..961754	+	169	189024147	-	BAbS19_I09240	-	Queuine tRNA-ribosyltransferase
880	 58.81	0	961824..962192	+	122	189024148	-	BAbS19_I09250	-	Transposase
881	 49.08	-2	962309..962581	+	90	189024149	-	BAbS19_I09260	-	IS711, transposase orfB
882	 47.81	-2	963837..965135	+	432	189024150	-	BAbS19_I09290	-	hypothetical protein
883	 46.63	-2	965461..966693	+	410	189024151	-	BAbS19_I09300	-	glycosyltransferase
884	 45.00	-2	966690..968249	+	519	189024152	-	BAbS19_I09310	-	Glycosyl transferase, group 1
885	 59.68	0	968596..969354	+	252	189024153	-	BAbS19_I09320	-	Secretion activator protein
886	 51.11	-1	969839..969973	+	44	189024154	-	BAbS19_I09330	-	hypothetical protein
887	 46.08	-2	970075..970176	+	33	189024155	-	BAbS19_I09340	-	hypothetical protein
888	 55.46	0	970313..970660	+	115	189024156	-	BAbS19_I09350	-	Arsenate reductase
889	 57.82	0	971031..972296	+	421	189024157	-	BAbS19_I09360	-	Rare lipoprotein A
890	 58.19	0	972407..973597	+	396	189024158	-	BAbS19_I09370	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
891	 57.52	0	973679..974323	+	214	189024159	-	BAbS19_I09380	-	Thymidylate kinase
892	 59.74	0	974320..975402	+	360	189024160	-	BAbS19_I09390	-	Replication factor C conserved domain protein
893	 57.82	0	975571..977118	+	515	189024161	-	BAbS19_I09400	-	methionine--tRNA ligase
894	 55.72	0	977124..977918	+	264	189024162	-	BAbS19_I09410	-	Sec-independent protein TATD
895	 56.53	0	977921..978739	+	272	189024163	-	BAbS19_I09420	-	Beta-lactamase-like protein
896	 59.61	0	978789..980588	-	599	189024164	-	BAbS19_I09430	-	beta-(1--2)glucan export ATP-binding protein
897	 59.33	0	980901..981881	+	326	189024165	-	BAbS19_I09440	-	Pseudouridine synthase
898	 54.22	0	981884..982807	+	307	189024166	-	BAbS19_I09450	-	Protein of unknown function DUF6
899	 57.51	0	982804..983469	+	221	189024167	-	BAbS19_I09460	-	hydrolase, haloacid dehalogenase-like family
900	 58.49	0	983511..984293	+	260	189024168	-	BAbS19_I09470	-	Beta tubulin
901	 55.46	0	984419..985828	-	469	189024169	-	BAbS19_I09480	-	GlnA, glutamine synthetase, type I
902	 53.69	-1	985976..986314	-	112	189024170	-	BAbS19_I09490	-	Nitrogen regulatory protein P-II
903	 60.49	0	986621..988126	+	501	189024171	-	BAbS19_I09500	-	YjeF family protein
904	 61.46	+1	988157..988348	-	63	189024172	-	BAbS19_I09510	-	hypothetical protein
905	 57.45	0	988426..989130	-	234	189024173	-	BAbS19_I09520	-	phosphoglycolate phosphatase
906	 50.88	-1	989185..989298	+	37	189024174	-	BAbS19_I09530	-	hypothetical protein
907	 57.37	0	989477..990175	+	232	189024175	-	BAbS19_I09540	-	ribose-5-phosphate isomerase A
908	 59.59	0	990201..990737	+	178	189024176	-	BAbS19_I09550	-	hypothetical protein
909	 55.70	0	990891..992285	+	464	189024177	-	BAbS19_I09560	-	glutathione reductase
910	 58.91	0	992494..993873	+	459	189024178	-	BAbS19_I09570	-	Aminoacyl-tRNA synthetase, class I
911	 53.85	-1	993987..994337	+	116	189024179	-	BAbS19_I09580	-	Prokaryotic diacylglycerol kinase
912	 56.85	0	994402..996081	+	559	189024180	-	BAbS19_I09590	-	NAD(+) synthase
913	 57.28	0	996093..997466	+	457	189024181	-	BAbS19_I09600	-	glutamyl-tRNA synthetase
914	 57.10	0	997384..998136	-	250	189024182	-	BAbS19_I09610	-	Proline-rich extensin
915	 59.66	0	998280..1000604	-	774	189024183	-	BAbS19_I09620	-	Phosphate acetyl/butaryl transferase
916	 57.70	0	1000822..1001802	-	326	189024184	-	BAbS19_I09630	-	Mandelate racemase/muconate lactonizing enzyme
917	 55.92	0	1001866..1003038	+	390	189024185	-	BAbS19_I09640	-	Sulfate transporter/antisigma-factor
918	 56.25	0	1003249..1004112	+	287	189024186	-	BAbS19_I09650	-	ABC transporter ATP-binding protein
919	 55.52	0	1004116..1005111	+	331	189024187	-	BAbS19_I09660	-	ABC transporter, periplasmic substrate-binding protein
920	 54.92	0	1005108..1005737	+	209	189024188	-	BAbS19_I09670	-	Protein of unknown function DUF330
921	 59.67	0	1005977..1010638	-	1553	189024189	-	BAbS19_I09680	-	hypothetical protein
922	 48.61	-2	1010868..1011083	+	71	189024190	-	BAbS19_I09690	-	hypothetical protein
923	 60.80	0	1011254..1011577	+	107	189024191	-	BAbS19_I09700	-	Adrenodoxin
924	 55.86	0	1011895..1012218	+	107	189024192	-	BAbS19_I09710	-	Thioredoxin reductase
925	 56.52	0	1012223..1012843	-	206	189024193	-	BAbS19_I09720	-	hypothetical protein
926	 57.98	0	1013001..1013840	+	279	189024194	-	BAbS19_I09730	-	Dihydropteroate synthase, DHPS
57.60	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.