IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.60   STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
39	 55.46	0	50148..50513	+	121	189023307	-	BAbS19_I00410	-	Prokaryotic Cytochrome C oxidase subunit IV
40	 62.57	+1	50964..51476	+	170	189023308	-	BAbS19_I00420	-	Hypothetical Membrane Spanning Protein
41	 59.02	0	51919..53880	+	653	189023309	-	BAbS19_I00430	-	Bacterial surface antigen (D15)
42	 59.79	0	53877..58616	+	1579	189023310	-	BAbS19_I00440	-	Gramicidin S biosynthesis GRST protein
43	 57.44	0	58761..59486	+	241	189023311	-	BAbS19_I00450	-	ErfK/YbiS/YcfS/YnhG
44	 55.56	0	59537..59752	-	71	189023312	-	BAbS19_I00460	-	hypothetical protein
45	 59.22	0	59822..60331	-	169	189023313	-	BAbS19_I00470	-	Hypothetical cytosolic protein (cysteine-rich)
46	 60.38	0	60663..60821	-	52	189023314	-	BAbS19_I00480	-	hypothetical protein
47	 58.61	0	60880..61884	-	334	189023315	-	BAbS19_I00490	-	Protein of unknown function DUF461
48	 59.65	0	62019..62417	-	132	189023316	-	BAbS19_I00500	-	hypothetical protein
49	 58.33	0	62638..63033	-	131	189023317	-	BAbS19_I00510	-	Glyoxalase/Bleomycin resistance protein
50	 62.20	+1	63230..64393	+	387	189023318	-	BAbS19_I00520	-	mrp-related protein
51	 57.84	0	64574..66205	-	543	189023319	-	BAbS19_I00530	-	phosphoglucomutase
52	 59.62	0	66421..67314	-	297	189023320	-	BAbS19_I00540	-	Bacterial regulatory protein LysR
53	 54.65	0	67439..68362	+	307	189023321	-	BAbS19_I00550	-	Esterase/lipase/thioesterase, active site
54	 58.94	0	68435..69133	+	232	189023322	-	BAbS19_I00560	-	Uridine kinase
55	 58.84	0	69233..69922	+	229	189023323	-	BAbS19_I00570	-	Fumarylacetoacetate (FAA) hydrolase
56	 52.60	-1	69942..70133	+	63	189023324	-	BAbS19_I00580	-	hypothetical protein
57	 46.67	-2	70201..70410	+	69	189023325	-	BAbS19_I00590	-	hypothetical protein
58	 51.85	-1	70576..70764	+	62	189023326	-	BAbS19_I00600	-	hypothetical protein
59	 62.38	+1	70779..71642	+	287	189023327	-	BAbS19_I00610	-	SLT domain protein
60	 57.84	0	71824..72480	+	218	189023328	-	BAbS19_I00620	-	Hly-III related protein
61	 60.57	0	72621..75836	-	1071	189023329	-	BAbS19_I00630	-	DNA polymerase III subunit alpha
62	 65.01	+2	75854..77305	-	483	189023330	-	BAbS19_I00640	-	hypothetical protein
63	 64.00	+1	77331..78194	-	287	189023331	-	BAbS19_I00650	-	hypothetical protein
64	 52.10	-1	78632..80938	+	768	189023332	-	BAbS19_I00660	-	outer membrane protein
65	 58.23	0	81774..82994	-	406	189023333	-	BAbS19_I00670	-	Argininosuccinate synthase
66	 56.82	0	83181..83840	+	219	189023334	-	BAbS19_I00680	-	Lysine exporter protein (LYSE/YGGA)
67	 57.94	0	83844..84347	-	167	189023335	-	BAbS19_I00690	-	hypothetical protein
68	 59.14	0	84381..85616	-	411	189023336	-	BAbS19_I00700	-	Conserved hypothetical protein 48
69	 57.54	0	85876..86379	-	167	189023337	-	BAbS19_I00710	-	hypothetical protein
70	 63.54	+1	86819..87202	-	127	189023338	-	BAbS19_I00720	-	hypothetical protein
71	 54.76	0	87290..87583	-	97	189023339	-	BAbS19_I00730	-	Transcriptional coactivator/pterin dehydratase
72	 55.89	0	87894..88190	+	98	189023340	-	BAbS19_I00740	-	Low molecular weight phosphotyrosine protein phosphatase
73	 61.25	+1	88323..88913	-	196	189023341	-	BAbS19_I00750	-	2`-5` RNA ligase, putative
74	 56.06	0	89094..89819	-	241	189023342	-	BAbS19_I00760	-	Lipolytic enzyme, G-D-S-L family
75	 61.87	+1	89966..90694	+	242	189023343	-	BAbS19_I00770	-	ATP/GTP-binding site motif A (P-loop)
76	 61.73	+1	90691..93240	+	849	189023344	-	BAbS19_I00780	-	Protein of unknown function DUF214
77	 57.86	0	93474..94211	+	245	189023345	-	BAbS19_I00790	-	hypothetical protein
78	 54.73	0	94884..95285	-	133	189023346	-	BAbS19_I00820	-	hypothetical protein
79	 56.99	0	95835..96671	-	278	189023347	-	BAbS19_I00830	-	hypothetical protein
80	 56.74	0	96722..96862	-	46	189023348	-	BAbS19_I00840	-	hypothetical protein
81	 60.27	0	96846..99533	-	895	189023349	-	BAbS19_I00850	-	Aconitate hydratase
82	 58.33	0	99877..100524	+	215	189023350	-	BAbS19_I00860	-	Heme exporter protein CcmA
83	 62.31	+1	100524..101189	+	221	189023351	-	BAbS19_I00870	-	SecY protein
84	 58.30	0	101244..102032	+	262	189023352	-	BAbS19_I00880	-	Cytochrome c assembly protein
85	 56.90	0	102029..102202	+	57	189023353	-	BAbS19_I00890	-	Heme exporter protein D (CcmD)
86	 59.31	0	102199..102810	+	203	189023354	-	BAbS19_I00900	-	Thiol:disulfide interchange protein CYCY precursor
87	 61.00	0	103059..104894	-	611	189023355	-	BAbS19_I00910	-	Dihydroxy-acid and 6-phosphogluconate dehydratase
88	 54.35	0	105075..105212	+	45	189023356	-	BAbS19_I00920	-	hypothetical protein
89	 61.57	+1	105293..105724	-	143	189023357	-	BAbS19_I00930	-	hypothetical protein
90	 59.73	0	105751..106125	-	124	189023358	-	BAbS19_I00940	-	Response regulator receiver
91	 49.37	-2	106303..106539	-	78	189023359	-	BAbS19_I00950	-	transcriptional regulator, putative
92	 56.79	0	107192..107596	+	134	189023360	-	BAbS19_I00960	-	hypothetical protein
93	 55.76	0	107682..108167	-	161	189023361	-	BAbS19_I00970	-	Formate/nitrite transporter
94	 54.42	0	108485..109276	+	263	189023362	-	BAbS19_I00980	-	hypothetical protein
95	 57.73	0	109554..110582	+	342	189023363	-	BAbS19_I00990	-	sulfate ABC transporter, sulfate-binding protein
96	 59.40	0	110677..111543	+	288	189023364	-	BAbS19_I01000	-	Binding-protein-dependent transport systems inner membrane component
97	 59.05	0	111533..112399	+	288	189023365	-	BAbS19_I01010	-	CysW-1, sulfate ABC transporter, permease protein
98	 61.56	+1	112362..113576	+	404	189023366	-	BAbS19_I01020	-	Sulfate transport atp-binding protein CYSA
99	 60.48	0	113962..122565	+	2867	189023367	-	BAbS19_I01030	-	cyclic beta 1-2 glucan synthetase
100	 58.39	0	122655..123959	+	434	189023368	-	BAbS19_I01040	-	Nicotinate phosphoribosyltransferase
101	 60.77	0	124001..124831	-	276	189023369	-	BAbS19_I01050	-	Phenazine biosynthesis PhzC/PhzF protein
102	 55.77	0	124941..125729	-	262	189023370	-	BAbS19_I01060	-	SAM methyltransferase
103	 59.33	0	125752..126678	-	308	189023371	-	BAbS19_I01070	-	Carbohydrate kinase, PfkB
104	 59.60	0	126769..127575	-	268	189023372	-	BAbS19_I01080	-	Short-chain dehydrogenase/reductase SDR
105	 60.12	0	127696..129987	-	763	189023373	-	BAbS19_I01090	-	penicillin-binding protein, 1A family
106	 56.13	0	130193..130885	-	230	189023374	-	BAbS19_I01100	-	outer membrane protein, putative
107	 56.19	0	131152..131838	-	228	189023375	-	BAbS19_I01110	-	outer membrane protein, putative
108	 56.31	0	132070..132687	-	205	189023376	-	BAbS19_I01120	-	3'-5' exonuclease
109	 59.46	0	132726..134141	-	471	189023377	-	BAbS19_I01130	-	Peptidase M20/M25/M40
110	 59.35	0	134702..137638	+	978	189023378	-	BAbS19_I01140	-	DNA polymerase I
111	 60.29	0	137780..139660	+	626	189023379	-	BAbS19_I01150	-	ATP-dependent RNA helicase, DEAD/DEAH box family
112	 59.83	0	139756..142197	-	813	189023380	-	BAbS19_I01160	-	DNA gyrase subunit B
113	 47.41	-2	142248..142382	-	44	189023381	-	BAbS19_I01170	-	hypothetical protein
114	 57.95	0	142516..143352	-	278	189023382	-	BAbS19_I01180	-	S-formylglutathione hydrolase
115	 56.62	0	144015..144482	-	155	189023383	-	BAbS19_I01210	-	GCN5-related N-acetyltransferase
116	 60.92	0	144482..145594	-	370	189023384	-	BAbS19_I01220	-	glutathione-dependent formaldehyde dehydrogenase
117	 59.39	0	145628..145888	-	86	189023385	-	BAbS19_I01230	-	Protein of unknown function DUF156
118	 64.94	+2	146040..147896	+	618	189023386	-	BAbS19_I01240	-	ATP-dependent helicase HRPB
119	 60.94	0	148589..149881	+	430	189023387	-	BAbS19_I01250	-	sensor histidine kinase
120	 58.27	0	149951..150319	+	122	189023388	-	BAbS19_I01260	-	Transposase
121	 49.08	-2	150436..150708	+	90	189023389	-	BAbS19_I01270	-	Transposase, IS4
122	 60.46	0	151308..151871	+	187	189023390	-	BAbS19_I01280	-	Response regulator receiver
123	 63.43	+1	151877..152371	-	164	189023391	-	BAbS19_I01290	-	hypothetical protein
124	 57.33	0	152641..153261	+	206	189023392	-	BAbS19_I01300	-	ErfK/YbiS/YcfS/YnhG
125	 59.69	0	153351..153923	-	190	189023393	-	BAbS19_I01310	-	Nitrogen-fixing NifU, C-terminal
126	 60.93	0	154032..154571	-	179	189023394	-	BAbS19_I01320	-	Hypothetical Cytosolic Protein
127	 59.83	0	154578..155645	-	355	189023395	-	BAbS19_I01330	-	tryptophanyl-tRNA synthetase
128	 60.10	0	155742..157325	-	527	189023396	-	BAbS19_I01340	-	Virulence factor MVIN-like protein
129	 58.54	0	157345..160149	-	934	189023397	-	BAbS19_I01350	-	PII uridylyl-transferase
130	 61.52	+1	160292..161185	-	297	189023398	-	BAbS19_I01360	-	NADP-dependent malic enzyme
131	 61.46	+1	161185..162585	-	466	189023399	-	BAbS19_I01370	-	NADP-dependent malic enzyme
132	 60.37	0	162742..165474	+	910	189023400	-	BAbS19_I01380	-	DNA mismatch repair protein
133	 58.50	0	165780..166673	-	297	189023401	-	BAbS19_I01390	-	hypothetical protein
134	 52.80	-1	166948..167430	-	160	189023402	-	BAbS19_I01400	-	Signal peptidase II, family A8
135	 59.96	0	167432..168325	-	297	189023403	-	BAbS19_I01410	-	tRNA/rRNA methyltransferase (SpoU)
136	 58.95	0	169579..169902	-	107	189023404	-	BAbS19_I01440	-	hypothetical protein
137	 56.84	0	169912..170196	-	94	189023405	-	BAbS19_I01450	-	Histone-like bacterial DNA-binding protein
138	 60.16	0	170243..171226	-	327	189023406	-	BAbS19_I01460	-	Clp protease
57.60	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.