IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
789	 57.58	0	862242..862835	-	197	189024057	-	BAbS19_I08300	-	nuclease domain protein
790	 57.21	0	863431..864234	+	267	189024058	-	BAbS19_I08310	-	Sel1-like repeat
791	 55.11	0	864293..865183	-	296	189024059	-	BAbS19_I08320	-	Exodeoxyribonuclease III
792	 57.49	0	865244..865951	+	235	189024060	-	BAbS19_I08330	-	Protein of unknown function DUF533
793	 54.74	0	866031..866357	-	108	189024061	-	BAbS19_I08340	-	Protein of unknown function, HesB/YadR/YfhF
794	 58.56	0	866524..867732	+	402	189024062	-	BAbS19_I08350	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
795	 56.94	0	867955..869712	+	585	189024063	-	BAbS19_I08360	-	arginyl-tRNA synthetase
796	 59.30	0	869924..872896	+	990	189024064	-	BAbS19_I08370	-	Antifreeze protein, type I
797	 59.22	0	873097..874116	+	339	189024065	-	BAbS19_I08380	-	Glycoside hydrolase, family 3, N-terminal
798	 60.92	0	874189..875040	+	283	189024066	-	BAbS19_I08390	-	Hypothetical Cytosolic Protein
799	 60.74	0	875033..875758	+	241	189024067	-	BAbS19_I08400	-	Conserved hypothetical protein 281
800	 56.16	0	875904..876122	+	72	189024068	-	BAbS19_I08410	-	twin argininte translocase protein A
801	 56.36	0	876233..876814	+	193	189024069	-	BAbS19_I08420	-	sec-independent translocase
802	 57.21	0	876811..877635	+	274	189024070	-	BAbS19_I08430	-	Sec-independent periplasmic protein translocase
803	 59.35	0	877712..878995	+	427	189024071	-	BAbS19_I08440	-	seryl-tRNA synthetase
804	 60.81	0	879144..879911	+	255	189024072	-	BAbS19_I08450	-	Survival protein SurE
805	 58.45	0	879908..880576	+	222	189024073	-	BAbS19_I08460	-	protein-L-isoaspartate O-methyltransferase
806	 60.51	0	880955..882253	+	432	189024074	-	BAbS19_I08470	-	Peptidoglycan-binding LysM
807	 54.90	0	882302..883168	-	288	189024075	-	BAbS19_I08480	-	ATP/GTP-binding site motif A (P-loop)
808	 54.39	0	883329..883670	+	113	189024076	-	BAbS19_I08490	-	YajC
809	 56.74	0	883789..886116	+	775	189024077	-	BAbS19_I08500	-	Vacuolar H+-transporting two-sector ATPase, C subunit
810	 60.51	0	886119..886508	+	129	189024078	-	BAbS19_I08510	-	Hypothetical Cytosolic Protein
811	 58.03	0	886514..887347	+	277	189024079	-	BAbS19_I08520	-	hypothetical protein
812	 59.74	0	887399..888799	-	466	189024080	-	BAbS19_I08530	-	glucose-inhibited division protein A
813	 59.86	0	889041..889187	-	48	189024081	-	BAbS19_I08540	-	hypothetical protein
814	 56.73	0	889461..890597	+	378	189024082	-	BAbS19_I08550	-	hypothetical protein
815	 56.14	0	890594..891163	+	189	189024083	-	BAbS19_I08560	-	hypothetical protein
816	 56.43	0	891567..892982	+	471	189024084	-	BAbS19_I08570	-	Peptidylprolyl isomerase, FKBP-type
817	 57.22	0	893132..894634	+	500	189024085	-	BAbS19_I08580	-	Glutamyl-tRNA(Gln) amidotransferase B subunit
818	 53.57	-1	894634..895137	+	167	189024086	-	BAbS19_I08590	-	GCN5-related N-acetyltransferase
819	 58.88	0	895297..895707	+	136	189024087	-	BAbS19_I08600	-	NADH:ubiquinone oxidoreductase 17.2 kDa subunit
820	 46.83	-2	895767..895892	+	41	189024088	-	BAbS19_I08610	-	hypothetical protein
821	 58.11	0	895916..896371	+	151	189024089	-	BAbS19_I08620	-	hypothetical protein
822	 59.19	0	896415..897029	-	204	189024090	-	BAbS19_I08630	-	Aat, leucyl/phenylalanyl-tRNA--protein transferase
823	 57.54	0	897035..898393	-	452	189024091	-	BAbS19_I08640	-	acetyl-CoA carboxylase
824	 61.15	0	898443..898913	-	156	189024092	-	BAbS19_I08650	-	acetyl-CoA carboxylase
825	 54.64	0	898915..899388	-	157	189024093	-	BAbS19_I08660	-	Dehydroquinase, class II
826	 56.14	0	899632..900429	-	265	189024094	-	BAbS19_I08670	-	DSBA oxidoreductase
827	 58.47	0	900477..901892	-	471	189024095	-	BAbS19_I08680	-	Zinc metalloprotease
828	 59.36	0	902084..903247	+	387	189024096	-	BAbS19_I08690	-	1-aminocyclopropane-1-carboxylate synthase
829	 58.83	0	903366..906134	-	922	189024097	-	BAbS19_I08700	-	Ribonuclease E and G
830	 56.90	0	906813..908081	+	422	189024098	-	BAbS19_I08710	-	Cell wall hydrolase/autolysin
831	 58.29	0	908361..910820	+	819	189024099	-	BAbS19_I08720	-	Glycosyl transferase, family 51
832	 57.76	0	911124..912089	+	321	189024100	-	BAbS19_I08730	-	Peptide chain release factor 2
833	 42.11	-2	912148..912261	-	37	189024101	-	BAbS19_I08740	-	hypothetical protein
834	 58.81	0	912283..912651	+	122	189024102	-	BAbS19_I08750	-	Transposase
835	 50.92	-1	912768..913040	+	90	189024103	-	BAbS19_I08760	-	Transposase, IS4
836	 52.94	-1	913094..913195	-	33	189024104	-	BAbS19_I08770	-	hypothetical protein
837	 61.71	+1	913192..913554	-	120	189024105	-	BAbS19_I08780	-	hypothetical protein
838	 57.00	0	913725..914552	-	275	189024106	-	BAbS19_I08790	-	Protein of unknown function DUF455
839	 56.13	0	914574..915038	-	154	189024107	-	BAbS19_I08800	-	Alkyl hydroperoxide reductase
840	 56.50	0	915283..918723	+	1146	189024108	-	BAbS19_I08810	-	RNA-binding region RNP-1 (RNA recognition motif)
841	 58.37	0	918782..920035	-	417	189024109	-	BAbS19_I08820	-	tyrosyl-tRNA synthetase
842	 60.52	0	920151..921272	+	373	189024110	-	BAbS19_I08830	-	hypothetical protein
843	 55.56	0	921269..921601	-	110	189024111	-	BAbS19_I08840	-	Small multidrug resistance protein
844	 57.48	0	921713..922387	-	224	189024112	-	BAbS19_I08850	-	Esterase/lipase/thioesterase, active site
845	 58.47	0	922478..923770	+	430	189024113	-	BAbS19_I08860	-	Aminotransferase, class V
846	 55.91	0	923951..925474	+	507	189024114	-	BAbS19_I08870	-	hypothetical protein
847	 55.95	0	925542..926297	+	251	189024115	-	BAbS19_I08880	-	ABC transporter
848	 59.31	0	926311..927588	+	425	189024116	-	BAbS19_I08890	-	hypothetical protein
849	 55.58	0	927670..928914	+	414	189024117	-	BAbS19_I08900	-	Aminotransferase, class V
850	 57.62	0	928911..929330	+	139	189024118	-	BAbS19_I08910	-	Protein of unknown function DUF59
851	 51.65	-1	929364..930335	-	323	189024119	-	BAbS19_I08920	-	Glycosyl transferase, family 2
852	 54.52	0	930762..931535	+	257	189024120	-	BAbS19_I08930	-	ATP-NAD kinase
853	 57.83	0	931863..933311	+	482	189024121	-	BAbS19_I08940	-	ATP-dependent RNA helicase, DEAD/DEAH box family
854	 56.41	0	933548..934015	-	155	189024122	-	BAbS19_I08950	-	HESB protein
855	 53.22	-1	934121..934291	+	56	189024123	-	BAbS19_I08960	-	hypothetical protein
856	 56.48	0	934530..934637	+	35	189024124	-	BAbS19_I08970	-	hypothetical protein
857	 59.70	0	934718..934918	+	66	189024125	-	BAbS19_I08980	-	Heavy metal transport/detoxification protein
858	 56.05	0	935245..935913	+	222	189024126	-	BAbS19_I08990	-	Protein-L-isoaspartate O-methyltransferase
859	 59.16	0	936064..937422	+	452	189024127	-	BAbS19_I09000	-	Outer membrane efflux protein
860	 58.06	0	937672..938403	+	243	189024128	-	BAbS19_I09010	-	hypothetical protein
861	 57.15	0	938694..941426	+	910	189024129	-	BAbS19_I09020	-	valyl-tRNA synthetase
862	 52.92	-1	941817..943118	+	433	189024130	-	BAbS19_I09030	-	Outer membrane protein E
863	 56.55	0	944298..944831	-	177	189024131	-	BAbS19_I09060	-	Arginine/ornithine-binding periplasmic protein precursor
864	 52.53	-1	945176..945649	-	157	189024132	-	BAbS19_I09070	-	Rhodopsin-like GPCR superfamily
865	 54.20	0	945675..946340	-	221	189024133	-	BAbS19_I09080	-	molybdopterin-guanine dinucleotide biosynthesis protein A
866	 58.26	0	946516..947550	-	344	189024134	-	BAbS19_I09090	-	MoaA/nifB/pqqE family protein
867	 55.28	0	947737..948096	+	119	189024135	-	BAbS19_I09100	-	hypothetical protein
868	 57.42	0	948164..948736	-	190	189024136	-	BAbS19_I09110	-	Salicylate hydroxylase
869	 58.33	0	949615..951234	-	539	189024137	-	BAbS19_I09120	-	Fumarate hydratase class I, aerobic
870	 53.97	-1	954344..954595	-	83	189024138	-	BAbS19_I09150	-	Transglycosylase-associated protein
871	 50.78	-1	955104..956129	-	341	189024139	-	BAbS19_I09160	-	Phage integrase
872	 57.12	0	956304..957350	+	348	189024140	-	BAbS19_I09170	-	hypothetical protein
873	 51.52	-1	957502..957732	+	76	189024141	-	BAbS19_I09180	-	hypothetical protein
874	 57.61	0	957729..958004	+	91	189024142	-	BAbS19_I09190	-	hypothetical protein
875	 56.17	0	958180..958503	+	107	189024143	-	BAbS19_I09200	-	hypothetical protein
876	 54.59	0	958849..959055	+	68	189024144	-	BAbS19_I09210	-	outer membrane protein, putative
877	 55.56	0	960424..960738	-	104	189024145	-	BAbS19_I09220	-	hypothetical protein
878	 47.66	-2	960738..961058	-	106	189024146	-	BAbS19_I09230	-	hypothetical protein
879	 58.04	0	961245..961754	+	169	189024147	-	BAbS19_I09240	-	Queuine tRNA-ribosyltransferase
880	 58.81	0	961824..962192	+	122	189024148	-	BAbS19_I09250	-	Transposase
881	 49.08	-2	962309..962581	+	90	189024149	-	BAbS19_I09260	-	IS711, transposase orfB
882	 47.81	-2	963837..965135	+	432	189024150	-	BAbS19_I09290	-	hypothetical protein
883	 46.63	-2	965461..966693	+	410	189024151	-	BAbS19_I09300	-	glycosyltransferase
884	 45.00	-2	966690..968249	+	519	189024152	-	BAbS19_I09310	-	Glycosyl transferase, group 1
885	 59.68	0	968596..969354	+	252	189024153	-	BAbS19_I09320	-	Secretion activator protein
886	 51.11	-1	969839..969973	+	44	189024154	-	BAbS19_I09330	-	hypothetical protein
887	 46.08	-2	970075..970176	+	33	189024155	-	BAbS19_I09340	-	hypothetical protein
888	 55.46	0	970313..970660	+	115	189024156	-	BAbS19_I09350	-	Arsenate reductase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.