IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
755	 58.21	0	831165..832430	-	421	189024023	-	BAbS19_I07960	-	drug resistance transporter, Bcr/CflA family
756	 50.15	-2	832701..833033	-	110	189024024	-	BAbS19_I07970	-	Glutaredoxin-related protein
757	 58.55	0	833218..833451	-	77	189024025	-	BAbS19_I07980	-	ATP/GTP-binding site motif A (P-loop):BolA-like protein
758	 59.15	0	833721..835943	-	740	189024026	-	BAbS19_I07990	-	AIR synthase related protein
759	 62.44	+1	836130..836531	-	133	189024027	-	BAbS19_I08000	-	lipoprotein, putative
760	 56.94	0	836591..837238	-	215	189024028	-	BAbS19_I08010	-	Glutathione S-transferase
761	 60.57	0	837490..838161	-	223	189024029	-	BAbS19_I08020	-	phosphoribosylformylglycinamidine synthase
762	 58.85	0	838184..838426	-	80	189024030	-	BAbS19_I08030	-	phosphoribosylformylglycinamidine synthase
763	 55.95	0	838542..839306	-	254	189024031	-	BAbS19_I08040	-	SAICAR synthetase
764	 56.17	0	839562..839885	+	107	189024032	-	BAbS19_I08050	-	hypothetical protein
765	 57.94	0	839950..840717	+	255	189024033	-	BAbS19_I08060	-	HpcH/HpaI aldolase
766	 58.73	0	840766..841332	-	188	189024034	-	BAbS19_I08070	-	hypothetical protein
767	 61.42	+1	841601..842476	+	291	189024035	-	BAbS19_I08080	-	Biphenyl-2,3-diol 1,2-dioxygenase III
768	 59.45	0	842702..844003	-	433	189024036	-	BAbS19_I08090	-	Fumarate lyase
769	 60.62	0	844030..844707	-	225	189024037	-	BAbS19_I08100	-	Ribulose-phosphate 3-epimerase
770	 57.50	0	844865..845791	-	308	189024038	-	BAbS19_I08110	-	Bacterial lipid A biosynthesis acyltransferase
771	 61.42	+1	845805..846833	-	342	189024039	-	BAbS19_I08120	-	Zinc-containing alcohol dehydrogenase superfamily
772	 60.64	0	846915..848192	-	425	189024040	-	BAbS19_I08130	-	Beta-ketoacyl synthase
773	 60.83	0	848194..849375	-	393	189024041	-	BAbS19_I08140	-	Beta-ketoacyl synthase
774	 51.06	-1	849523..849804	-	93	189024042	-	BAbS19_I08150	-	Phosphopantetheine-binding domain protein
775	 60.24	0	850005..850766	-	253	189024043	-	BAbS19_I08160	-	hypothetical protein
776	 57.09	0	850982..852004	+	340	189024044	-	BAbS19_I08170	-	Aldose 1-epimerase
777	 59.85	0	851979..852917	-	312	189024045	-	BAbS19_I08180	-	2-dehydro-3-deoxygluconokinase
778	 58.33	0	853106..853837	+	243	189024046	-	BAbS19_I08190	-	hypothetical protein
779	 59.04	0	853841..854980	+	379	189024047	-	BAbS19_I08200	-	Amidohydrolase
780	 58.48	0	854977..855660	-	227	189024048	-	BAbS19_I08210	-	hydrolase, haloacid dehalogenase-like family
781	 55.01	0	855916..856704	+	262	189024049	-	BAbS19_I08220	-	Bacterial extracellular solute-binding protein, family 3
782	 59.34	0	856896..857918	+	340	189024050	-	BAbS19_I08230	-	TIM-barrel protein, yjbN family
783	 57.45	0	857915..858619	-	234	189024051	-	BAbS19_I08240	-	Eukaryotic/viral aspartic protease, active site
784	 54.67	0	858619..858768	-	49	189024052	-	BAbS19_I08250	-	hypothetical protein
785	 62.32	+1	858833..859615	-	260	189024053	-	BAbS19_I08260	-	Cobalamin-5-phosphate synthase CobS
786	 62.06	+1	859769..860788	+	339	189024054	-	BAbS19_I08270	-	Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
787	 54.58	0	860896..861375	-	159	189024055	-	BAbS19_I08280	-	Bacterial regulatory protein, AsnC family
788	 58.82	0	861474..862136	-	220	189024056	-	BAbS19_I08290	-	hypothetical protein
789	 57.58	0	862242..862835	-	197	189024057	-	BAbS19_I08300	-	nuclease domain protein
790	 57.21	0	863431..864234	+	267	189024058	-	BAbS19_I08310	-	Sel1-like repeat
791	 55.11	0	864293..865183	-	296	189024059	-	BAbS19_I08320	-	Exodeoxyribonuclease III
792	 57.49	0	865244..865951	+	235	189024060	-	BAbS19_I08330	-	Protein of unknown function DUF533
793	 54.74	0	866031..866357	-	108	189024061	-	BAbS19_I08340	-	Protein of unknown function, HesB/YadR/YfhF
794	 58.56	0	866524..867732	+	402	189024062	-	BAbS19_I08350	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
795	 56.94	0	867955..869712	+	585	189024063	-	BAbS19_I08360	-	arginyl-tRNA synthetase
796	 59.30	0	869924..872896	+	990	189024064	-	BAbS19_I08370	-	Antifreeze protein, type I
797	 59.22	0	873097..874116	+	339	189024065	-	BAbS19_I08380	-	Glycoside hydrolase, family 3, N-terminal
798	 60.92	0	874189..875040	+	283	189024066	-	BAbS19_I08390	-	Hypothetical Cytosolic Protein
799	 60.74	0	875033..875758	+	241	189024067	-	BAbS19_I08400	-	Conserved hypothetical protein 281
800	 56.16	0	875904..876122	+	72	189024068	-	BAbS19_I08410	-	twin argininte translocase protein A
801	 56.36	0	876233..876814	+	193	189024069	-	BAbS19_I08420	-	sec-independent translocase
802	 57.21	0	876811..877635	+	274	189024070	-	BAbS19_I08430	-	Sec-independent periplasmic protein translocase
803	 59.35	0	877712..878995	+	427	189024071	-	BAbS19_I08440	-	seryl-tRNA synthetase
804	 60.81	0	879144..879911	+	255	189024072	-	BAbS19_I08450	-	Survival protein SurE
805	 58.45	0	879908..880576	+	222	189024073	-	BAbS19_I08460	-	protein-L-isoaspartate O-methyltransferase
806	 60.51	0	880955..882253	+	432	189024074	-	BAbS19_I08470	-	Peptidoglycan-binding LysM
807	 54.90	0	882302..883168	-	288	189024075	-	BAbS19_I08480	-	ATP/GTP-binding site motif A (P-loop)
808	 54.39	0	883329..883670	+	113	189024076	-	BAbS19_I08490	-	YajC
809	 56.74	0	883789..886116	+	775	189024077	-	BAbS19_I08500	-	Vacuolar H+-transporting two-sector ATPase, C subunit
810	 60.51	0	886119..886508	+	129	189024078	-	BAbS19_I08510	-	Hypothetical Cytosolic Protein
811	 58.03	0	886514..887347	+	277	189024079	-	BAbS19_I08520	-	hypothetical protein
812	 59.74	0	887399..888799	-	466	189024080	-	BAbS19_I08530	-	glucose-inhibited division protein A
813	 59.86	0	889041..889187	-	48	189024081	-	BAbS19_I08540	-	hypothetical protein
814	 56.73	0	889461..890597	+	378	189024082	-	BAbS19_I08550	-	hypothetical protein
815	 56.14	0	890594..891163	+	189	189024083	-	BAbS19_I08560	-	hypothetical protein
816	 56.43	0	891567..892982	+	471	189024084	-	BAbS19_I08570	-	Peptidylprolyl isomerase, FKBP-type
817	 57.22	0	893132..894634	+	500	189024085	-	BAbS19_I08580	-	Glutamyl-tRNA(Gln) amidotransferase B subunit
818	 53.57	-1	894634..895137	+	167	189024086	-	BAbS19_I08590	-	GCN5-related N-acetyltransferase
819	 58.88	0	895297..895707	+	136	189024087	-	BAbS19_I08600	-	NADH:ubiquinone oxidoreductase 17.2 kDa subunit
820	 46.83	-2	895767..895892	+	41	189024088	-	BAbS19_I08610	-	hypothetical protein
821	 58.11	0	895916..896371	+	151	189024089	-	BAbS19_I08620	-	hypothetical protein
822	 59.19	0	896415..897029	-	204	189024090	-	BAbS19_I08630	-	Aat, leucyl/phenylalanyl-tRNA--protein transferase
823	 57.54	0	897035..898393	-	452	189024091	-	BAbS19_I08640	-	acetyl-CoA carboxylase
824	 61.15	0	898443..898913	-	156	189024092	-	BAbS19_I08650	-	acetyl-CoA carboxylase
825	 54.64	0	898915..899388	-	157	189024093	-	BAbS19_I08660	-	Dehydroquinase, class II
826	 56.14	0	899632..900429	-	265	189024094	-	BAbS19_I08670	-	DSBA oxidoreductase
827	 58.47	0	900477..901892	-	471	189024095	-	BAbS19_I08680	-	Zinc metalloprotease
828	 59.36	0	902084..903247	+	387	189024096	-	BAbS19_I08690	-	1-aminocyclopropane-1-carboxylate synthase
829	 58.83	0	903366..906134	-	922	189024097	-	BAbS19_I08700	-	Ribonuclease E and G
830	 56.90	0	906813..908081	+	422	189024098	-	BAbS19_I08710	-	Cell wall hydrolase/autolysin
831	 58.29	0	908361..910820	+	819	189024099	-	BAbS19_I08720	-	Glycosyl transferase, family 51
832	 57.76	0	911124..912089	+	321	189024100	-	BAbS19_I08730	-	Peptide chain release factor 2
833	 42.11	-2	912148..912261	-	37	189024101	-	BAbS19_I08740	-	hypothetical protein
834	 58.81	0	912283..912651	+	122	189024102	-	BAbS19_I08750	-	Transposase
835	 50.92	-1	912768..913040	+	90	189024103	-	BAbS19_I08760	-	Transposase, IS4
836	 52.94	-1	913094..913195	-	33	189024104	-	BAbS19_I08770	-	hypothetical protein
837	 61.71	+1	913192..913554	-	120	189024105	-	BAbS19_I08780	-	hypothetical protein
838	 57.00	0	913725..914552	-	275	189024106	-	BAbS19_I08790	-	Protein of unknown function DUF455
839	 56.13	0	914574..915038	-	154	189024107	-	BAbS19_I08800	-	Alkyl hydroperoxide reductase
840	 56.50	0	915283..918723	+	1146	189024108	-	BAbS19_I08810	-	RNA-binding region RNP-1 (RNA recognition motif)
841	 58.37	0	918782..920035	-	417	189024109	-	BAbS19_I08820	-	tyrosyl-tRNA synthetase
842	 60.52	0	920151..921272	+	373	189024110	-	BAbS19_I08830	-	hypothetical protein
843	 55.56	0	921269..921601	-	110	189024111	-	BAbS19_I08840	-	Small multidrug resistance protein
844	 57.48	0	921713..922387	-	224	189024112	-	BAbS19_I08850	-	Esterase/lipase/thioesterase, active site
845	 58.47	0	922478..923770	+	430	189024113	-	BAbS19_I08860	-	Aminotransferase, class V
846	 55.91	0	923951..925474	+	507	189024114	-	BAbS19_I08870	-	hypothetical protein
847	 55.95	0	925542..926297	+	251	189024115	-	BAbS19_I08880	-	ABC transporter
848	 59.31	0	926311..927588	+	425	189024116	-	BAbS19_I08890	-	hypothetical protein
849	 55.58	0	927670..928914	+	414	189024117	-	BAbS19_I08900	-	Aminotransferase, class V
850	 57.62	0	928911..929330	+	139	189024118	-	BAbS19_I08910	-	Protein of unknown function DUF59
851	 51.65	-1	929364..930335	-	323	189024119	-	BAbS19_I08920	-	Glycosyl transferase, family 2
852	 54.52	0	930762..931535	+	257	189024120	-	BAbS19_I08930	-	ATP-NAD kinase
853	 57.83	0	931863..933311	+	482	189024121	-	BAbS19_I08940	-	ATP-dependent RNA helicase, DEAD/DEAH box family
854	 56.41	0	933548..934015	-	155	189024122	-	BAbS19_I08950	-	HESB protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.