IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 57.24	0	793667..794950	+	427	189023991	-	BAbS19_I07610	-	O-acetylhomoserine sulfhydrylase
724	 61.58	+1	795022..795414	-	130	189023992	-	BAbS19_I07620	-	Hypothetical Membrane Spanning Protein
725	 48.26	-2	797386..797787	-	133	189023993	-	BAbS19_I07630	-	hypothetical protein
726	 44.26	-2	798084..798266	+	60	189023994	-	BAbS19_I07640	-	hypothetical protein
727	 54.00	0	798650..798799	-	49	189023995	-	BAbS19_I07650	-	hypothetical protein
728	 52.46	-1	799361..799726	+	121	189023996	-	BAbS19_I07660	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
729	 59.97	0	799717..800298	+	193	189023997	-	BAbS19_I07670	-	NADH dehydrogenase beta subunit
730	 56.65	0	800411..801019	+	202	189023998	-	BAbS19_I07680	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
731	 57.93	0	801037..802227	+	396	189023999	-	BAbS19_I07690	-	Pectinesterase
732	 58.68	0	802227..802940	+	237	189024000	-	BAbS19_I07700	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
733	 59.33	0	802944..804251	+	435	189024001	-	BAbS19_I07710	-	Respiratory-chain NADH dehydrogenase, 51 kDa subunit
734	 61.15	0	804386..806470	+	694	189024002	-	BAbS19_I07720	-	Respiratory-chain NADH dehydrogenase 75 kDa subunit
735	 55.27	0	806490..807533	+	347	189024003	-	BAbS19_I07730	-	Tetracycline resistance protein TetB
736	 58.94	0	807546..808037	+	163	189024004	-	BAbS19_I07740	-	7Fe ferredoxin
737	 57.77	0	808211..808828	+	205	189024005	-	BAbS19_I07750	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
738	 51.78	-1	808839..809147	+	102	189024006	-	BAbS19_I07760	-	NADH dehydrogenase kappa subunit
739	 57.30	0	809155..811140	+	661	189024007	-	BAbS19_I07770	-	NADH dehydrogenase subunit L
740	 57.59	0	811140..812648	+	502	189024008	-	BAbS19_I07780	-	NADH-ubiquinone oxidoreductase, chain 4
741	 56.99	0	812670..814106	+	478	189024009	-	BAbS19_I07790	-	NADH dehydrogenase subunit N
742	 58.40	0	814132..814929	+	265	189024010	-	BAbS19_I07800	-	biotin--protein ligase
743	 59.75	0	815123..816799	+	558	189024011	-	BAbS19_I07810	-	Beta-lactamase-like protein
744	 57.28	0	816839..817243	+	134	189024012	-	BAbS19_I07820	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
745	 53.70	-1	817246..817515	+	89	189024013	-	BAbS19_I07830	-	hypothetical protein
746	 56.88	0	818363..819691	+	442	189024014	-	BAbS19_I07840	-	prolyl-tRNA synthetase
747	 57.53	0	819688..821001	+	437	189024015	-	BAbS19_I07850	-	Bacterial general secretion pathway protein H
748	 61.55	+1	821001..821684	+	227	189024016	-	BAbS19_I07860	-	ATP/GTP-binding site motif A (P-loop)
749	 57.99	0	822343..825834	+	1163	189024017	-	BAbS19_I07870	-	DNA polymerase III subunit alpha
750	 55.56	0	825875..826072	+	65	189024018	-	BAbS19_I07880	-	hypothetical protein
751	 51.45	-1	826117..826530	-	137	189024019	-	BAbS19_I07890	-	hypothetical protein
752	 57.61	0	828109..828726	+	205	189024020	-	BAbS19_I07930	-	Ribosomal protein S4
753	 55.33	0	829255..830136	+	293	189024021	-	BAbS19_I07940	-	hypothetical protein
754	 57.97	0	830123..830950	+	275	189024022	-	BAbS19_I07950	-	Inositol phosphatase/fructose-1,6-bisphosphatase
755	 58.21	0	831165..832430	-	421	189024023	-	BAbS19_I07960	-	drug resistance transporter, Bcr/CflA family
756	 50.15	-2	832701..833033	-	110	189024024	-	BAbS19_I07970	-	Glutaredoxin-related protein
757	 58.55	0	833218..833451	-	77	189024025	-	BAbS19_I07980	-	ATP/GTP-binding site motif A (P-loop):BolA-like protein
758	 59.15	0	833721..835943	-	740	189024026	-	BAbS19_I07990	-	AIR synthase related protein
759	 62.44	+1	836130..836531	-	133	189024027	-	BAbS19_I08000	-	lipoprotein, putative
760	 56.94	0	836591..837238	-	215	189024028	-	BAbS19_I08010	-	Glutathione S-transferase
761	 60.57	0	837490..838161	-	223	189024029	-	BAbS19_I08020	-	phosphoribosylformylglycinamidine synthase
762	 58.85	0	838184..838426	-	80	189024030	-	BAbS19_I08030	-	phosphoribosylformylglycinamidine synthase
763	 55.95	0	838542..839306	-	254	189024031	-	BAbS19_I08040	-	SAICAR synthetase
764	 56.17	0	839562..839885	+	107	189024032	-	BAbS19_I08050	-	hypothetical protein
765	 57.94	0	839950..840717	+	255	189024033	-	BAbS19_I08060	-	HpcH/HpaI aldolase
766	 58.73	0	840766..841332	-	188	189024034	-	BAbS19_I08070	-	hypothetical protein
767	 61.42	+1	841601..842476	+	291	189024035	-	BAbS19_I08080	-	Biphenyl-2,3-diol 1,2-dioxygenase III
768	 59.45	0	842702..844003	-	433	189024036	-	BAbS19_I08090	-	Fumarate lyase
769	 60.62	0	844030..844707	-	225	189024037	-	BAbS19_I08100	-	Ribulose-phosphate 3-epimerase
770	 57.50	0	844865..845791	-	308	189024038	-	BAbS19_I08110	-	Bacterial lipid A biosynthesis acyltransferase
771	 61.42	+1	845805..846833	-	342	189024039	-	BAbS19_I08120	-	Zinc-containing alcohol dehydrogenase superfamily
772	 60.64	0	846915..848192	-	425	189024040	-	BAbS19_I08130	-	Beta-ketoacyl synthase
773	 60.83	0	848194..849375	-	393	189024041	-	BAbS19_I08140	-	Beta-ketoacyl synthase
774	 51.06	-1	849523..849804	-	93	189024042	-	BAbS19_I08150	-	Phosphopantetheine-binding domain protein
775	 60.24	0	850005..850766	-	253	189024043	-	BAbS19_I08160	-	hypothetical protein
776	 57.09	0	850982..852004	+	340	189024044	-	BAbS19_I08170	-	Aldose 1-epimerase
777	 59.85	0	851979..852917	-	312	189024045	-	BAbS19_I08180	-	2-dehydro-3-deoxygluconokinase
778	 58.33	0	853106..853837	+	243	189024046	-	BAbS19_I08190	-	hypothetical protein
779	 59.04	0	853841..854980	+	379	189024047	-	BAbS19_I08200	-	Amidohydrolase
780	 58.48	0	854977..855660	-	227	189024048	-	BAbS19_I08210	-	hydrolase, haloacid dehalogenase-like family
781	 55.01	0	855916..856704	+	262	189024049	-	BAbS19_I08220	-	Bacterial extracellular solute-binding protein, family 3
782	 59.34	0	856896..857918	+	340	189024050	-	BAbS19_I08230	-	TIM-barrel protein, yjbN family
783	 57.45	0	857915..858619	-	234	189024051	-	BAbS19_I08240	-	Eukaryotic/viral aspartic protease, active site
784	 54.67	0	858619..858768	-	49	189024052	-	BAbS19_I08250	-	hypothetical protein
785	 62.32	+1	858833..859615	-	260	189024053	-	BAbS19_I08260	-	Cobalamin-5-phosphate synthase CobS
786	 62.06	+1	859769..860788	+	339	189024054	-	BAbS19_I08270	-	Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
787	 54.58	0	860896..861375	-	159	189024055	-	BAbS19_I08280	-	Bacterial regulatory protein, AsnC family
788	 58.82	0	861474..862136	-	220	189024056	-	BAbS19_I08290	-	hypothetical protein
789	 57.58	0	862242..862835	-	197	189024057	-	BAbS19_I08300	-	nuclease domain protein
790	 57.21	0	863431..864234	+	267	189024058	-	BAbS19_I08310	-	Sel1-like repeat
791	 55.11	0	864293..865183	-	296	189024059	-	BAbS19_I08320	-	Exodeoxyribonuclease III
792	 57.49	0	865244..865951	+	235	189024060	-	BAbS19_I08330	-	Protein of unknown function DUF533
793	 54.74	0	866031..866357	-	108	189024061	-	BAbS19_I08340	-	Protein of unknown function, HesB/YadR/YfhF
794	 58.56	0	866524..867732	+	402	189024062	-	BAbS19_I08350	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
795	 56.94	0	867955..869712	+	585	189024063	-	BAbS19_I08360	-	arginyl-tRNA synthetase
796	 59.30	0	869924..872896	+	990	189024064	-	BAbS19_I08370	-	Antifreeze protein, type I
797	 59.22	0	873097..874116	+	339	189024065	-	BAbS19_I08380	-	Glycoside hydrolase, family 3, N-terminal
798	 60.92	0	874189..875040	+	283	189024066	-	BAbS19_I08390	-	Hypothetical Cytosolic Protein
799	 60.74	0	875033..875758	+	241	189024067	-	BAbS19_I08400	-	Conserved hypothetical protein 281
800	 56.16	0	875904..876122	+	72	189024068	-	BAbS19_I08410	-	twin argininte translocase protein A
801	 56.36	0	876233..876814	+	193	189024069	-	BAbS19_I08420	-	sec-independent translocase
802	 57.21	0	876811..877635	+	274	189024070	-	BAbS19_I08430	-	Sec-independent periplasmic protein translocase
803	 59.35	0	877712..878995	+	427	189024071	-	BAbS19_I08440	-	seryl-tRNA synthetase
804	 60.81	0	879144..879911	+	255	189024072	-	BAbS19_I08450	-	Survival protein SurE
805	 58.45	0	879908..880576	+	222	189024073	-	BAbS19_I08460	-	protein-L-isoaspartate O-methyltransferase
806	 60.51	0	880955..882253	+	432	189024074	-	BAbS19_I08470	-	Peptidoglycan-binding LysM
807	 54.90	0	882302..883168	-	288	189024075	-	BAbS19_I08480	-	ATP/GTP-binding site motif A (P-loop)
808	 54.39	0	883329..883670	+	113	189024076	-	BAbS19_I08490	-	YajC
809	 56.74	0	883789..886116	+	775	189024077	-	BAbS19_I08500	-	Vacuolar H+-transporting two-sector ATPase, C subunit
810	 60.51	0	886119..886508	+	129	189024078	-	BAbS19_I08510	-	Hypothetical Cytosolic Protein
811	 58.03	0	886514..887347	+	277	189024079	-	BAbS19_I08520	-	hypothetical protein
812	 59.74	0	887399..888799	-	466	189024080	-	BAbS19_I08530	-	glucose-inhibited division protein A
813	 59.86	0	889041..889187	-	48	189024081	-	BAbS19_I08540	-	hypothetical protein
814	 56.73	0	889461..890597	+	378	189024082	-	BAbS19_I08550	-	hypothetical protein
815	 56.14	0	890594..891163	+	189	189024083	-	BAbS19_I08560	-	hypothetical protein
816	 56.43	0	891567..892982	+	471	189024084	-	BAbS19_I08570	-	Peptidylprolyl isomerase, FKBP-type
817	 57.22	0	893132..894634	+	500	189024085	-	BAbS19_I08580	-	Glutamyl-tRNA(Gln) amidotransferase B subunit
818	 53.57	-1	894634..895137	+	167	189024086	-	BAbS19_I08590	-	GCN5-related N-acetyltransferase
819	 58.88	0	895297..895707	+	136	189024087	-	BAbS19_I08600	-	NADH:ubiquinone oxidoreductase 17.2 kDa subunit
820	 46.83	-2	895767..895892	+	41	189024088	-	BAbS19_I08610	-	hypothetical protein
821	 58.11	0	895916..896371	+	151	189024089	-	BAbS19_I08620	-	hypothetical protein
822	 59.19	0	896415..897029	-	204	189024090	-	BAbS19_I08630	-	Aat, leucyl/phenylalanyl-tRNA--protein transferase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.