IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
680	 54.90	0	749882..750697	+	271	189023948	-	BAbS19_I07180	-	amino acid ABC transporter, ATP-binding protein
681	 58.96	0	750745..751950	-	401	189023949	-	BAbS19_I07190	-	Flavoprotein monooxygenase
682	 54.51	0	751980..752234	-	84	189023950	-	BAbS19_I07200	-	hypothetical protein
683	 56.89	0	752469..754760	+	763	189023951	-	BAbS19_I07210	-	polyphosphate kinase
684	 59.00	0	754757..756295	+	512	189023952	-	BAbS19_I07220	-	phosphatase, Ppx/GppA family
685	 60.36	0	756433..757590	-	385	189023953	-	BAbS19_I07230	-	Rnd, ribonuclease D
686	 58.39	0	757817..759604	+	595	189023954	-	BAbS19_I07240	-	aspartyl-tRNA synthetase
687	 55.89	0	759645..760841	-	398	189023955	-	BAbS19_I07250	-	hypothetical protein
688	 58.06	0	761241..763553	+	770	189023956	-	BAbS19_I07260	-	DNA topoisomerase IV subunit A
689	 58.67	0	763732..764481	-	249	189023957	-	BAbS19_I07270	-	arginyl-tRNA-protein transferase
690	 53.93	-1	764602..765072	-	156	189023958	-	BAbS19_I07280	-	hypothetical protein
691	 59.34	0	765219..766256	-	345	189023959	-	BAbS19_I07290	-	Delta-aminolevulinic acid dehydratase
692	 58.29	0	766424..767473	+	349	189023960	-	BAbS19_I07300	-	Enoyl-CoA hydratase/isomerase
693	 58.39	0	767487..767921	+	144	189023961	-	BAbS19_I07310	-	hypothetical protein
694	 55.62	0	768236..768751	+	171	189023962	-	BAbS19_I07320	-	Bacterial regulatory protein, MarR family
695	 53.19	-1	768838..768978	-	46	189023963	-	BAbS19_I07330	-	hypothetical protein
696	 58.06	0	769113..770414	+	433	189023964	-	BAbS19_I07340	-	Putative peptidoglycan binding domain protein
697	 52.59	-1	770507..770641	+	44	189023965	-	BAbS19_I07350	-	hypothetical protein
698	 58.24	0	770645..771961	+	438	189023966	-	BAbS19_I07360	-	Glycine hydroxymethyltransferase
699	 58.07	0	772203..772679	+	158	189023967	-	BAbS19_I07370	-	Protein of unknown function DUF193
700	 61.85	+1	772681..773802	+	373	189023968	-	BAbS19_I07380	-	riboflavin biosynthesis protein RibD
701	 57.31	0	773802..774410	+	202	189023969	-	BAbS19_I07390	-	Lumazine-binding protein
702	 58.23	0	774505..774966	+	153	189023970	-	BAbS19_I07400	-	6,7-dimethyl-8-ribityllumazine synthase
703	 59.11	0	774972..775487	+	171	189023971	-	BAbS19_I07410	-	Antitermination protein NusB
704	 59.83	0	775680..778094	+	804	189023972	-	BAbS19_I07420	-	membrane-bound proton-translocating pyrophosphatase
705	 58.33	0	778166..778669	-	167	189023973	-	BAbS19_I07430	-	SmpA/OmlA
706	 53.33	-1	778774..779328	+	184	189023974	-	BAbS19_I07440	-	Ubiquinol-cytochrome C chaperone
707	 55.20	0	779448..780005	+	185	189023975	-	BAbS19_I07450	-	hypothetical protein
708	 58.12	0	780123..781163	+	346	189023976	-	BAbS19_I07460	-	Fatty acid synthesis plsX protein
709	 59.57	0	781411..782382	+	323	189023977	-	BAbS19_I07470	-	Naringenin-chalcone synthase
710	 52.78	-1	782501..782824	+	107	189023978	-	BAbS19_I07480	-	Integration host factor, alpha subunit
711	 58.15	0	783361..783900	+	179	189023979	-	BAbS19_I07490	-	Bacterial regulatory protein, MerR family
712	 53.14	-1	783950..784267	-	105	189023980	-	BAbS19_I07500	-	Small multidrug resistance protein
713	 55.62	0	784613..786151	-	512	189023981	-	BAbS19_I07510	-	Bacterial sugar transferase
714	 53.30	-1	786505..787095	-	196	189023982	-	BAbS19_I07520	-	Polysaccharide export protein
715	 54.75	0	787216..787878	+	220	189023983	-	BAbS19_I07530	-	hypothetical protein
716	 54.79	0	787946..788164	-	72	189023984	-	BAbS19_I07540	-	hypothetical protein
717	 58.59	0	788516..789592	+	358	189023985	-	BAbS19_I07550	-	Cytochrome oxidase assembly
718	 59.27	0	789745..790677	-	310	189023986	-	BAbS19_I07560	-	N-acetyl-gamma-glutamyl-phosphate reductase
719	 59.52	0	790767..791717	-	316	189023987	-	BAbS19_I07570	-	Putative agmatinase
720	 61.43	+1	791808..792284	-	158	189023988	-	BAbS19_I07580	-	Ribosomal protein S9
721	 57.42	0	792287..792751	-	154	189023989	-	BAbS19_I07590	-	Ribosomal protein L13
722	 58.84	0	792987..793433	-	148	189023990	-	BAbS19_I07600	-	Phenylacetic acid degradation-related protein
723	 57.24	0	793667..794950	+	427	189023991	-	BAbS19_I07610	-	O-acetylhomoserine sulfhydrylase
724	 61.58	+1	795022..795414	-	130	189023992	-	BAbS19_I07620	-	Hypothetical Membrane Spanning Protein
725	 48.26	-2	797386..797787	-	133	189023993	-	BAbS19_I07630	-	hypothetical protein
726	 44.26	-2	798084..798266	+	60	189023994	-	BAbS19_I07640	-	hypothetical protein
727	 54.00	0	798650..798799	-	49	189023995	-	BAbS19_I07650	-	hypothetical protein
728	 52.46	-1	799361..799726	+	121	189023996	-	BAbS19_I07660	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
729	 59.97	0	799717..800298	+	193	189023997	-	BAbS19_I07670	-	NADH dehydrogenase beta subunit
730	 56.65	0	800411..801019	+	202	189023998	-	BAbS19_I07680	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
731	 57.93	0	801037..802227	+	396	189023999	-	BAbS19_I07690	-	Pectinesterase
732	 58.68	0	802227..802940	+	237	189024000	-	BAbS19_I07700	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
733	 59.33	0	802944..804251	+	435	189024001	-	BAbS19_I07710	-	Respiratory-chain NADH dehydrogenase, 51 kDa subunit
734	 61.15	0	804386..806470	+	694	189024002	-	BAbS19_I07720	-	Respiratory-chain NADH dehydrogenase 75 kDa subunit
735	 55.27	0	806490..807533	+	347	189024003	-	BAbS19_I07730	-	Tetracycline resistance protein TetB
736	 58.94	0	807546..808037	+	163	189024004	-	BAbS19_I07740	-	7Fe ferredoxin
737	 57.77	0	808211..808828	+	205	189024005	-	BAbS19_I07750	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
738	 51.78	-1	808839..809147	+	102	189024006	-	BAbS19_I07760	-	NADH dehydrogenase kappa subunit
739	 57.30	0	809155..811140	+	661	189024007	-	BAbS19_I07770	-	NADH dehydrogenase subunit L
740	 57.59	0	811140..812648	+	502	189024008	-	BAbS19_I07780	-	NADH-ubiquinone oxidoreductase, chain 4
741	 56.99	0	812670..814106	+	478	189024009	-	BAbS19_I07790	-	NADH dehydrogenase subunit N
742	 58.40	0	814132..814929	+	265	189024010	-	BAbS19_I07800	-	biotin--protein ligase
743	 59.75	0	815123..816799	+	558	189024011	-	BAbS19_I07810	-	Beta-lactamase-like protein
744	 57.28	0	816839..817243	+	134	189024012	-	BAbS19_I07820	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
745	 53.70	-1	817246..817515	+	89	189024013	-	BAbS19_I07830	-	hypothetical protein
746	 56.88	0	818363..819691	+	442	189024014	-	BAbS19_I07840	-	prolyl-tRNA synthetase
747	 57.53	0	819688..821001	+	437	189024015	-	BAbS19_I07850	-	Bacterial general secretion pathway protein H
748	 61.55	+1	821001..821684	+	227	189024016	-	BAbS19_I07860	-	ATP/GTP-binding site motif A (P-loop)
749	 57.99	0	822343..825834	+	1163	189024017	-	BAbS19_I07870	-	DNA polymerase III subunit alpha
750	 55.56	0	825875..826072	+	65	189024018	-	BAbS19_I07880	-	hypothetical protein
751	 51.45	-1	826117..826530	-	137	189024019	-	BAbS19_I07890	-	hypothetical protein
752	 57.61	0	828109..828726	+	205	189024020	-	BAbS19_I07930	-	Ribosomal protein S4
753	 55.33	0	829255..830136	+	293	189024021	-	BAbS19_I07940	-	hypothetical protein
754	 57.97	0	830123..830950	+	275	189024022	-	BAbS19_I07950	-	Inositol phosphatase/fructose-1,6-bisphosphatase
755	 58.21	0	831165..832430	-	421	189024023	-	BAbS19_I07960	-	drug resistance transporter, Bcr/CflA family
756	 50.15	-2	832701..833033	-	110	189024024	-	BAbS19_I07970	-	Glutaredoxin-related protein
757	 58.55	0	833218..833451	-	77	189024025	-	BAbS19_I07980	-	ATP/GTP-binding site motif A (P-loop):BolA-like protein
758	 59.15	0	833721..835943	-	740	189024026	-	BAbS19_I07990	-	AIR synthase related protein
759	 62.44	+1	836130..836531	-	133	189024027	-	BAbS19_I08000	-	lipoprotein, putative
760	 56.94	0	836591..837238	-	215	189024028	-	BAbS19_I08010	-	Glutathione S-transferase
761	 60.57	0	837490..838161	-	223	189024029	-	BAbS19_I08020	-	phosphoribosylformylglycinamidine synthase
762	 58.85	0	838184..838426	-	80	189024030	-	BAbS19_I08030	-	phosphoribosylformylglycinamidine synthase
763	 55.95	0	838542..839306	-	254	189024031	-	BAbS19_I08040	-	SAICAR synthetase
764	 56.17	0	839562..839885	+	107	189024032	-	BAbS19_I08050	-	hypothetical protein
765	 57.94	0	839950..840717	+	255	189024033	-	BAbS19_I08060	-	HpcH/HpaI aldolase
766	 58.73	0	840766..841332	-	188	189024034	-	BAbS19_I08070	-	hypothetical protein
767	 61.42	+1	841601..842476	+	291	189024035	-	BAbS19_I08080	-	Biphenyl-2,3-diol 1,2-dioxygenase III
768	 59.45	0	842702..844003	-	433	189024036	-	BAbS19_I08090	-	Fumarate lyase
769	 60.62	0	844030..844707	-	225	189024037	-	BAbS19_I08100	-	Ribulose-phosphate 3-epimerase
770	 57.50	0	844865..845791	-	308	189024038	-	BAbS19_I08110	-	Bacterial lipid A biosynthesis acyltransferase
771	 61.42	+1	845805..846833	-	342	189024039	-	BAbS19_I08120	-	Zinc-containing alcohol dehydrogenase superfamily
772	 60.64	0	846915..848192	-	425	189024040	-	BAbS19_I08130	-	Beta-ketoacyl synthase
773	 60.83	0	848194..849375	-	393	189024041	-	BAbS19_I08140	-	Beta-ketoacyl synthase
774	 51.06	-1	849523..849804	-	93	189024042	-	BAbS19_I08150	-	Phosphopantetheine-binding domain protein
775	 60.24	0	850005..850766	-	253	189024043	-	BAbS19_I08160	-	hypothetical protein
776	 57.09	0	850982..852004	+	340	189024044	-	BAbS19_I08170	-	Aldose 1-epimerase
777	 59.85	0	851979..852917	-	312	189024045	-	BAbS19_I08180	-	2-dehydro-3-deoxygluconokinase
778	 58.33	0	853106..853837	+	243	189024046	-	BAbS19_I08190	-	hypothetical protein
779	 59.04	0	853841..854980	+	379	189024047	-	BAbS19_I08200	-	Amidohydrolase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.