IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
615	 51.31	-1	678424..678690	-	88	189023883	-	BAbS19_I06460	-	hypothetical protein
616	 55.73	0	678847..679230	-	127	189023884	-	BAbS19_I06470	-	hypothetical protein
617	 58.33	0	679310..679753	-	147	189023885	-	BAbS19_I06480	-	NUDIX hydrolase
618	 60.51	0	679839..680618	+	259	189023886	-	BAbS19_I06490	-	Protein of unknown function DUF159
619	 60.00	0	680673..681287	+	204	189023887	-	BAbS19_I06500	-	Lysine exporter protein (LYSE/YGGA)
620	 57.74	0	681264..681431	-	55	189023888	-	BAbS19_I06510	-	hypothetical protein
621	 48.15	-2	681436..681651	-	71	189023889	-	BAbS19_I06520	-	hypothetical protein
622	 59.11	0	681798..683318	+	506	189023890	-	BAbS19_I06530	-	Cysteinyl-tRNA synthetase, class Ia
623	 59.36	0	683739..685352	+	537	189023891	-	BAbS19_I06540	-	2-isopropylmalate synthase
624	 57.87	0	685599..686519	+	306	189023892	-	BAbS19_I06550	-	RarD protein
625	 57.93	0	686634..688385	+	583	189023893	-	BAbS19_I06560	-	Peptidase M23/M37
626	 59.57	0	688453..689283	-	276	189023894	-	BAbS19_I06570	-	SAM (and some other nucleotide) binding motif
627	 60.47	0	689280..690311	-	343	189023895	-	BAbS19_I06580	-	Pyridoxal phosphate biosynthetic protein PdxA
628	 56.74	0	690376..691332	-	318	189023896	-	BAbS19_I06590	-	peptidyl-prolyl cis-trans isomerase, putative
629	 55.54	0	691660..694059	-	799	189023897	-	BAbS19_I06600	-	Organic solvent tolerance protein
630	 54.27	0	694059..695147	-	362	189023898	-	BAbS19_I06610	-	Predicted permease YjgP/YjgQ family
631	 56.00	0	695144..696352	-	402	189023899	-	BAbS19_I06620	-	Predicted permease YjgP/YjgQ family
632	 58.63	0	696762..698255	+	497	189023900	-	BAbS19_I06630	-	Cytosol aminopeptidase
633	 56.22	0	698327..698776	+	149	189023901	-	BAbS19_I06640	-	DNA polymerase III chi subunit, HolC
634	 62.06	+1	698776..699339	+	187	189023902	-	BAbS19_I06650	-	hypothetical protein
635	 58.70	0	699416..701299	-	627	189023903	-	BAbS19_I06660	-	ATP/GTP-binding site motif A (P-loop)
636	 56.92	0	701342..701854	-	170	189023904	-	BAbS19_I06670	-	DinB
637	 57.92	0	702083..702505	+	140	189023905	-	BAbS19_I06680	-	Nucleoside diphosphate kinase
638	 56.29	0	702602..703507	-	301	189023906	-	BAbS19_I06690	-	Protein of unknown function DUF306
639	 56.50	0	703654..704145	-	163	189023907	-	BAbS19_I06700	-	Molybdopterin biosynthesis MoaE
640	 53.10	-1	704147..704404	-	85	189023908	-	BAbS19_I06710	-	thiamineS protein
641	 55.21	0	704409..704993	-	194	189023909	-	BAbS19_I06720	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
642	 59.58	0	705112..707184	-	690	189023910	-	BAbS19_I06730	-	excinuclease ABC subunit C
643	 58.12	0	707184..708002	-	272	189023911	-	BAbS19_I06740	-	short chain dehydrogenase
644	 56.10	0	708065..708982	+	305	189023912	-	BAbS19_I06750	-	OmpA-like transmembrane domain protein
645	 57.50	0	709079..709678	-	199	189023913	-	BAbS19_I06760	-	Aminoacyl-tRNA synthetase, class I
646	 58.70	0	709733..710422	-	229	189023914	-	BAbS19_I06770	-	Ribonuclease T2
647	 61.57	+1	710435..710905	-	156	189023915	-	BAbS19_I06780	-	hypothetical protein
648	 58.08	0	710988..711860	-	290	189023916	-	BAbS19_I06790	-	N-6 Adenine-specific DNA methylase
649	 62.41	+1	712016..712861	+	281	189023917	-	BAbS19_I06800	-	Protein of unknown function DUF6
650	 59.33	0	712939..715065	+	708	189023918	-	BAbS19_I06810	-	oxidoreductase, molybdopterin-binding, hypothetical
651	 63.05	+1	715292..715816	-	174	189023919	-	BAbS19_I06820	-	hypothetical protein
652	 59.87	0	715992..716609	-	205	189023920	-	BAbS19_I06830	-	phosphoribosylglycinamide formyltransferase
653	 60.74	0	716606..717685	-	359	189023921	-	BAbS19_I06840	-	Phosphoribosylformylglycinamidine cyclo-ligase
654	 51.67	-1	717727..717906	-	59	189023922	-	BAbS19_I06850	-	hypothetical protein
655	 57.75	0	718175..720058	+	627	189023923	-	BAbS19_I06860	-	ATP/GTP-binding protein
656	 58.97	0	720055..720924	+	289	189023924	-	BAbS19_I06870	-	UDP-glucose 4-epimerase
657	 62.60	+1	720921..721706	-	261	189023925	-	BAbS19_I06880	-	Proline-rich extensin
658	 58.30	0	721779..722483	-	234	189023926	-	BAbS19_I06890	-	Short-chain dehydrogenase/reductase SDR
659	 49.36	-2	722645..722800	-	51	189023927	-	BAbS19_I06900	-	hypothetical protein
660	 39.74	-2	722874..723029	+	51	189023928	-	BAbS19_I06910	-	hypothetical protein
661	 58.18	0	723182..724855	-	557	189023929	-	BAbS19_I06920	-	L-lactate permease
662	 53.27	-1	725389..725694	+	101	189023930	-	BAbS19_I06930	-	ETC complex I subunit conserved region
663	 54.89	0	726146..726850	+	234	189023931	-	BAbS19_I06940	-	hypothetical protein
664	 53.10	-1	727071..727682	-	203	189023932	-	BAbS19_I06950	-	Exonuclease
665	 53.48	-1	728007..728552	-	181	189023933	-	BAbS19_I06960	-	Adenylate kinase
666	 52.15	-1	728549..730084	-	511	189023934	-	BAbS19_I06970	-	GCN5-related N-acetyltransferase
667	 51.57	-1	730059..730853	-	264	189023935	-	BAbS19_I06980	-	Helix-turn-helix motif
668	 52.34	-1	732573..734687	+	704	189023936	-	BAbS19_I06990	-	Integrase, catalytic domain protein
669	 52.22	-1	734680..735558	+	292	189023937	-	BAbS19_I07000	-	transposition protein, putative
670	 48.44	-2	737503..737694	-	63	189023938	-	BAbS19_I07030	-	hypothetical protein
671	 46.33	-2	737941..739248	+	435	189023939	-	BAbS19_I07040	-	Beta and gamma crystallin
672	 56.88	0	741164..742042	+	292	189023940	-	BAbS19_I07080	-	hypothetical protein
673	 58.50	0	742329..742940	-	203	189023941	-	BAbS19_I07090	-	Bacterial SH3-like region
674	 48.72	-2	743451..743606	-	51	189023942	-	BAbS19_I07100	-	hypothetical protein
675	 56.32	0	743593..744762	-	389	189023943	-	BAbS19_I07110	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
676	 56.51	0	744973..745740	+	255	189023944	-	BAbS19_I07120	-	PA-phosphatase related phosphoesterase
677	 55.56	0	747514..748197	+	227	189023945	-	BAbS19_I07150	-	General L-amino acid transport system permease protein AAPQ
678	 58.14	0	748711..748839	+	42	189023946	-	BAbS19_I07160	-	amino acid ABC transporter, permease protein
679	 56.55	0	748998..749867	+	289	189023947	-	BAbS19_I07170	-	Tetracycline resistance protein
680	 54.90	0	749882..750697	+	271	189023948	-	BAbS19_I07180	-	amino acid ABC transporter, ATP-binding protein
681	 58.96	0	750745..751950	-	401	189023949	-	BAbS19_I07190	-	Flavoprotein monooxygenase
682	 54.51	0	751980..752234	-	84	189023950	-	BAbS19_I07200	-	hypothetical protein
683	 56.89	0	752469..754760	+	763	189023951	-	BAbS19_I07210	-	polyphosphate kinase
684	 59.00	0	754757..756295	+	512	189023952	-	BAbS19_I07220	-	phosphatase, Ppx/GppA family
685	 60.36	0	756433..757590	-	385	189023953	-	BAbS19_I07230	-	Rnd, ribonuclease D
686	 58.39	0	757817..759604	+	595	189023954	-	BAbS19_I07240	-	aspartyl-tRNA synthetase
687	 55.89	0	759645..760841	-	398	189023955	-	BAbS19_I07250	-	hypothetical protein
688	 58.06	0	761241..763553	+	770	189023956	-	BAbS19_I07260	-	DNA topoisomerase IV subunit A
689	 58.67	0	763732..764481	-	249	189023957	-	BAbS19_I07270	-	arginyl-tRNA-protein transferase
690	 53.93	-1	764602..765072	-	156	189023958	-	BAbS19_I07280	-	hypothetical protein
691	 59.34	0	765219..766256	-	345	189023959	-	BAbS19_I07290	-	Delta-aminolevulinic acid dehydratase
692	 58.29	0	766424..767473	+	349	189023960	-	BAbS19_I07300	-	Enoyl-CoA hydratase/isomerase
693	 58.39	0	767487..767921	+	144	189023961	-	BAbS19_I07310	-	hypothetical protein
694	 55.62	0	768236..768751	+	171	189023962	-	BAbS19_I07320	-	Bacterial regulatory protein, MarR family
695	 53.19	-1	768838..768978	-	46	189023963	-	BAbS19_I07330	-	hypothetical protein
696	 58.06	0	769113..770414	+	433	189023964	-	BAbS19_I07340	-	Putative peptidoglycan binding domain protein
697	 52.59	-1	770507..770641	+	44	189023965	-	BAbS19_I07350	-	hypothetical protein
698	 58.24	0	770645..771961	+	438	189023966	-	BAbS19_I07360	-	Glycine hydroxymethyltransferase
699	 58.07	0	772203..772679	+	158	189023967	-	BAbS19_I07370	-	Protein of unknown function DUF193
700	 61.85	+1	772681..773802	+	373	189023968	-	BAbS19_I07380	-	riboflavin biosynthesis protein RibD
701	 57.31	0	773802..774410	+	202	189023969	-	BAbS19_I07390	-	Lumazine-binding protein
702	 58.23	0	774505..774966	+	153	189023970	-	BAbS19_I07400	-	6,7-dimethyl-8-ribityllumazine synthase
703	 59.11	0	774972..775487	+	171	189023971	-	BAbS19_I07410	-	Antitermination protein NusB
704	 59.83	0	775680..778094	+	804	189023972	-	BAbS19_I07420	-	membrane-bound proton-translocating pyrophosphatase
705	 58.33	0	778166..778669	-	167	189023973	-	BAbS19_I07430	-	SmpA/OmlA
706	 53.33	-1	778774..779328	+	184	189023974	-	BAbS19_I07440	-	Ubiquinol-cytochrome C chaperone
707	 55.20	0	779448..780005	+	185	189023975	-	BAbS19_I07450	-	hypothetical protein
708	 58.12	0	780123..781163	+	346	189023976	-	BAbS19_I07460	-	Fatty acid synthesis plsX protein
709	 59.57	0	781411..782382	+	323	189023977	-	BAbS19_I07470	-	Naringenin-chalcone synthase
710	 52.78	-1	782501..782824	+	107	189023978	-	BAbS19_I07480	-	Integration host factor, alpha subunit
711	 58.15	0	783361..783900	+	179	189023979	-	BAbS19_I07490	-	Bacterial regulatory protein, MerR family
712	 53.14	-1	783950..784267	-	105	189023980	-	BAbS19_I07500	-	Small multidrug resistance protein
713	 55.62	0	784613..786151	-	512	189023981	-	BAbS19_I07510	-	Bacterial sugar transferase
714	 53.30	-1	786505..787095	-	196	189023982	-	BAbS19_I07520	-	Polysaccharide export protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.