IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
572	 58.87	0	635664..636920	-	418	189023840	-	BAbS19_I06030	-	General substrate transporter
573	 61.51	+1	637082..637954	-	290	189023841	-	BAbS19_I06040	-	DNA polymerase, bacteriophage-type
574	 59.22	0	638343..640034	+	563	189023842	-	BAbS19_I06050	-	electron transfer flavoprotein, oxidoreductase
575	 59.44	0	640150..641118	-	322	189023843	-	BAbS19_I06060	-	Endonuclease/exonuclease/phosphatase family
576	 58.48	0	641287..642789	-	500	189023844	-	BAbS19_I06070	-	Purine and other phosphorylase, family 1
577	 51.77	-1	642997..643278	+	93	189023845	-	BAbS19_I06080	-	hypothetical protein
578	 54.57	0	643356..644066	+	236	189023846	-	BAbS19_I06090	-	Glutathione S-transferase, N-terminal
579	 58.05	0	644125..644472	-	115	189023847	-	BAbS19_I06100	-	hypothetical protein
580	 54.70	0	644469..644702	-	77	189023848	-	BAbS19_I06110	-	hypothetical protein
581	 56.98	0	644972..645229	+	85	189023849	-	BAbS19_I06120	-	hypothetical protein
582	 56.42	0	645289..645942	-	217	189023850	-	BAbS19_I06130	-	Protein of unknown function DUF161
583	 57.76	0	646716..647366	+	216	189023851	-	BAbS19_I06140	-	Antifreeze protein, type I
584	 61.19	0	647411..647830	-	139	189023852	-	BAbS19_I06150	-	Protein of unknown function DUF423
585	 55.82	0	647803..648936	-	377	189023853	-	BAbS19_I06160	-	Aminotransferase, class-II
586	 52.21	-1	649299..650225	-	308	189023854	-	BAbS19_I06170	-	Phage integrase
587	 57.45	0	650499..651464	-	321	189023855	-	BAbS19_I06180	-	Porin
588	 57.02	0	652298..653458	-	386	189023856	-	BAbS19_I06190	-	hypothetical protein
589	 53.74	-1	653536..654177	+	213	189023857	-	BAbS19_I06200	-	hypothetical protein
590	 57.99	0	654494..655150	+	218	189023858	-	BAbS19_I06210	-	hypothetical protein
591	 59.65	0	655213..657351	-	712	189023859	-	BAbS19_I06220	-	transglycosylase SLT domain protein
592	 56.92	0	657746..658627	+	293	189023860	-	BAbS19_I06230	-	Dihydrodipicolinate synthetase
593	 55.77	0	658718..659194	+	158	189023861	-	BAbS19_I06240	-	SmpB protein
594	 58.18	0	659430..660101	-	223	189023862	-	BAbS19_I06250	-	Uracil-DNA glycosylase superfamily
595	 54.34	0	660132..660707	-	191	189023863	-	BAbS19_I06260	-	Protein of unknown function DUF88
596	 35.26	-2	660907..661062	-	51	189023864	-	BAbS19_I06270	-	hypothetical protein
597	 56.22	0	661104..661505	+	133	189023865	-	BAbS19_I06280	-	RNA polymerase, omega subunit
598	 58.34	0	661836..663998	+	720	189023866	-	BAbS19_I06290	-	RelA/SpoT family protein
599	 60.45	0	664006..664584	+	192	189023867	-	BAbS19_I06300	-	orotate phosphoribosyltransferase
600	 56.35	0	664744..665499	+	251	189023868	-	BAbS19_I06310	-	Cyclic nucleotide-binding domain protein
601	 57.23	0	665880..667214	+	444	189023869	-	BAbS19_I06320	-	Oxygen-independent coproporphyrinogen III oxidase HemN
602	 59.24	0	667398..668609	-	403	189023870	-	BAbS19_I06330	-	Major facilitator superfamily (MFS)
603	 58.51	0	668831..669700	+	289	189023871	-	BAbS19_I06340	-	Transcriptional regulator, ARAC family
604	 61.11	0	669750..670325	+	191	189023872	-	BAbS19_I06350	-	hypothetical protein
605	 54.81	0	670322..670726	+	134	189023873	-	BAbS19_I06360	-	Holo-acyl carrier protein synthase
606	 56.58	0	670837..671619	+	260	189023874	-	BAbS19_I06370	-	Bacterial signal peptidase S26A
607	 58.81	0	671588..672325	+	245	189023875	-	BAbS19_I06380	-	Ribonuclease III family
608	 57.59	0	672470..673405	+	311	189023876	-	BAbS19_I06390	-	GTP-binding protein Era
609	 59.01	0	673432..674175	+	247	189023877	-	BAbS19_I06400	-	Recombination protein O, RecO
610	 62.16	+1	674153..674662	-	169	189023878	-	BAbS19_I06410	-	Tyrosine specific protein phosphatase and dual specificity protein phosphatase
611	 59.74	0	674659..675279	-	206	189023879	-	BAbS19_I06420	-	hypothetical protein
612	 57.84	0	675279..676139	-	286	189023880	-	BAbS19_I06430	-	Glycine cleavage T protein (aminomethyl transferase)
613	 59.70	0	676228..677562	+	444	189023881	-	BAbS19_I06440	-	Dihydroorotase
614	 58.69	0	677611..678375	-	254	189023882	-	BAbS19_I06450	-	hypothetical protein
615	 51.31	-1	678424..678690	-	88	189023883	-	BAbS19_I06460	-	hypothetical protein
616	 55.73	0	678847..679230	-	127	189023884	-	BAbS19_I06470	-	hypothetical protein
617	 58.33	0	679310..679753	-	147	189023885	-	BAbS19_I06480	-	NUDIX hydrolase
618	 60.51	0	679839..680618	+	259	189023886	-	BAbS19_I06490	-	Protein of unknown function DUF159
619	 60.00	0	680673..681287	+	204	189023887	-	BAbS19_I06500	-	Lysine exporter protein (LYSE/YGGA)
620	 57.74	0	681264..681431	-	55	189023888	-	BAbS19_I06510	-	hypothetical protein
621	 48.15	-2	681436..681651	-	71	189023889	-	BAbS19_I06520	-	hypothetical protein
622	 59.11	0	681798..683318	+	506	189023890	-	BAbS19_I06530	-	Cysteinyl-tRNA synthetase, class Ia
623	 59.36	0	683739..685352	+	537	189023891	-	BAbS19_I06540	-	2-isopropylmalate synthase
624	 57.87	0	685599..686519	+	306	189023892	-	BAbS19_I06550	-	RarD protein
625	 57.93	0	686634..688385	+	583	189023893	-	BAbS19_I06560	-	Peptidase M23/M37
626	 59.57	0	688453..689283	-	276	189023894	-	BAbS19_I06570	-	SAM (and some other nucleotide) binding motif
627	 60.47	0	689280..690311	-	343	189023895	-	BAbS19_I06580	-	Pyridoxal phosphate biosynthetic protein PdxA
628	 56.74	0	690376..691332	-	318	189023896	-	BAbS19_I06590	-	peptidyl-prolyl cis-trans isomerase, putative
629	 55.54	0	691660..694059	-	799	189023897	-	BAbS19_I06600	-	Organic solvent tolerance protein
630	 54.27	0	694059..695147	-	362	189023898	-	BAbS19_I06610	-	Predicted permease YjgP/YjgQ family
631	 56.00	0	695144..696352	-	402	189023899	-	BAbS19_I06620	-	Predicted permease YjgP/YjgQ family
632	 58.63	0	696762..698255	+	497	189023900	-	BAbS19_I06630	-	Cytosol aminopeptidase
633	 56.22	0	698327..698776	+	149	189023901	-	BAbS19_I06640	-	DNA polymerase III chi subunit, HolC
634	 62.06	+1	698776..699339	+	187	189023902	-	BAbS19_I06650	-	hypothetical protein
635	 58.70	0	699416..701299	-	627	189023903	-	BAbS19_I06660	-	ATP/GTP-binding site motif A (P-loop)
636	 56.92	0	701342..701854	-	170	189023904	-	BAbS19_I06670	-	DinB
637	 57.92	0	702083..702505	+	140	189023905	-	BAbS19_I06680	-	Nucleoside diphosphate kinase
638	 56.29	0	702602..703507	-	301	189023906	-	BAbS19_I06690	-	Protein of unknown function DUF306
639	 56.50	0	703654..704145	-	163	189023907	-	BAbS19_I06700	-	Molybdopterin biosynthesis MoaE
640	 53.10	-1	704147..704404	-	85	189023908	-	BAbS19_I06710	-	thiamineS protein
641	 55.21	0	704409..704993	-	194	189023909	-	BAbS19_I06720	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
642	 59.58	0	705112..707184	-	690	189023910	-	BAbS19_I06730	-	excinuclease ABC subunit C
643	 58.12	0	707184..708002	-	272	189023911	-	BAbS19_I06740	-	short chain dehydrogenase
644	 56.10	0	708065..708982	+	305	189023912	-	BAbS19_I06750	-	OmpA-like transmembrane domain protein
645	 57.50	0	709079..709678	-	199	189023913	-	BAbS19_I06760	-	Aminoacyl-tRNA synthetase, class I
646	 58.70	0	709733..710422	-	229	189023914	-	BAbS19_I06770	-	Ribonuclease T2
647	 61.57	+1	710435..710905	-	156	189023915	-	BAbS19_I06780	-	hypothetical protein
648	 58.08	0	710988..711860	-	290	189023916	-	BAbS19_I06790	-	N-6 Adenine-specific DNA methylase
649	 62.41	+1	712016..712861	+	281	189023917	-	BAbS19_I06800	-	Protein of unknown function DUF6
650	 59.33	0	712939..715065	+	708	189023918	-	BAbS19_I06810	-	oxidoreductase, molybdopterin-binding, hypothetical
651	 63.05	+1	715292..715816	-	174	189023919	-	BAbS19_I06820	-	hypothetical protein
652	 59.87	0	715992..716609	-	205	189023920	-	BAbS19_I06830	-	phosphoribosylglycinamide formyltransferase
653	 60.74	0	716606..717685	-	359	189023921	-	BAbS19_I06840	-	Phosphoribosylformylglycinamidine cyclo-ligase
654	 51.67	-1	717727..717906	-	59	189023922	-	BAbS19_I06850	-	hypothetical protein
655	 57.75	0	718175..720058	+	627	189023923	-	BAbS19_I06860	-	ATP/GTP-binding protein
656	 58.97	0	720055..720924	+	289	189023924	-	BAbS19_I06870	-	UDP-glucose 4-epimerase
657	 62.60	+1	720921..721706	-	261	189023925	-	BAbS19_I06880	-	Proline-rich extensin
658	 58.30	0	721779..722483	-	234	189023926	-	BAbS19_I06890	-	Short-chain dehydrogenase/reductase SDR
659	 49.36	-2	722645..722800	-	51	189023927	-	BAbS19_I06900	-	hypothetical protein
660	 39.74	-2	722874..723029	+	51	189023928	-	BAbS19_I06910	-	hypothetical protein
661	 58.18	0	723182..724855	-	557	189023929	-	BAbS19_I06920	-	L-lactate permease
662	 53.27	-1	725389..725694	+	101	189023930	-	BAbS19_I06930	-	ETC complex I subunit conserved region
663	 54.89	0	726146..726850	+	234	189023931	-	BAbS19_I06940	-	hypothetical protein
664	 53.10	-1	727071..727682	-	203	189023932	-	BAbS19_I06950	-	Exonuclease
665	 53.48	-1	728007..728552	-	181	189023933	-	BAbS19_I06960	-	Adenylate kinase
666	 52.15	-1	728549..730084	-	511	189023934	-	BAbS19_I06970	-	GCN5-related N-acetyltransferase
667	 51.57	-1	730059..730853	-	264	189023935	-	BAbS19_I06980	-	Helix-turn-helix motif
668	 52.34	-1	732573..734687	+	704	189023936	-	BAbS19_I06990	-	Integrase, catalytic domain protein
669	 52.22	-1	734680..735558	+	292	189023937	-	BAbS19_I07000	-	transposition protein, putative
670	 48.44	-2	737503..737694	-	63	189023938	-	BAbS19_I07030	-	hypothetical protein
671	 46.33	-2	737941..739248	+	435	189023939	-	BAbS19_I07040	-	Beta and gamma crystallin
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.