IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
510	 58.81	0	567027..568490	-	487	189023778	-	BAbS19_I05370	-	Aldehyde dehydrogenase
511	 59.66	0	568642..570324	-	560	189023779	-	BAbS19_I05380	-	Glucose-methanol-choline oxidoreductase
512	 58.09	0	570327..570932	-	201	189023780	-	BAbS19_I05390	-	Bacterial regulatory protein TetR, HTH motif
513	 60.58	0	571069..572136	+	355	189023781	-	BAbS19_I05400	-	hypothetical protein
514	 58.81	0	572181..572651	+	156	189023782	-	BAbS19_I05410	-	Prokaryotic transcription elongation factor GreA/GreB
515	 50.00	-2	572648..573037	-	129	189023783	-	BAbS19_I05420	-	Death-on-curing family protein
516	 51.08	-1	573034..573264	-	76	189023784	-	BAbS19_I05430	-	Transcriptional regulator AbrB
517	 55.79	0	573325..574317	-	330	189023785	-	BAbS19_I05440	-	Mg2+ transporter protein, CorA-like protein
518	 59.78	0	575876..576427	+	183	189023786	-	BAbS19_I05470	-	Cyanate transport protein CYNX
519	 60.06	0	576484..576846	-	120	189023787	-	BAbS19_I05480	-	hypothetical protein
520	 59.59	0	577182..578693	+	503	189023788	-	BAbS19_I05490	-	ATP/GTP-binding site motif A (P-loop)
521	 60.67	0	578883..579599	-	238	189023789	-	BAbS19_I05500	-	ErfK/YbiS/YcfS/YnhG family protein
522	 58.26	0	579902..580555	-	217	189023790	-	BAbS19_I05510	-	haloacid dehalogenase
523	 53.83	-1	580778..581377	+	199	189023791	-	BAbS19_I05520	-	Manganese and iron superoxide dismutase
524	 60.12	0	581549..581884	-	111	189023792	-	BAbS19_I05530	-	Metallo-phosphoesterase
525	 57.75	0	582002..584110	-	702	189023793	-	BAbS19_I05540	-	PtrB, protease
526	 54.31	0	584683..585111	+	142	189023794	-	BAbS19_I05550	-	transcriptional regulatory protein MucR
527	 54.81	0	585319..585630	-	103	189023795	-	BAbS19_I05560	-	Hypothetical Cytosolic Protein
528	 57.02	0	585811..586266	+	151	189023796	-	BAbS19_I05570	-	DnaA domain protein
529	 59.50	0	586263..587057	+	264	189023797	-	BAbS19_I05580	-	Hypothetical Cytosolic Protein
530	 60.21	0	587168..588484	+	438	189023798	-	BAbS19_I05590	-	Amidase
531	 59.62	0	588525..588950	-	141	189023799	-	BAbS19_I05600	-	hypothetical protein
532	 56.44	0	589030..589479	-	149	189023800	-	BAbS19_I05610	-	hypothetical protein
533	 59.29	0	589770..591599	+	609	189023801	-	BAbS19_I05620	-	sensor histidine kinase
534	 60.37	0	591526..592542	+	338	189023802	-	BAbS19_I05630	-	Putative peptidoglycan binding domain 1
535	 56.90	0	592556..592903	+	115	189023803	-	BAbS19_I05640	-	hypothetical protein
536	 58.50	0	592914..593990	-	358	189023804	-	BAbS19_I05650	-	hypothetical protein
537	 54.88	0	594188..594730	-	180	189023805	-	BAbS19_I05660	-	hypothetical protein
538	 62.91	+1	594723..595334	-	203	189023806	-	BAbS19_I05670	-	hypothetical protein
539	 59.25	0	595341..597497	-	718	189023807	-	BAbS19_I05680	-	Glycosyl transferase
540	 60.04	0	597855..598367	+	170	189023808	-	BAbS19_I05690	-	hypothetical protein
541	 64.92	+2	598411..599553	+	380	189023809	-	BAbS19_I05700	-	ATP/GTP-binding site motif A (P-loop)
542	 62.06	+1	599585..600778	+	397	189023810	-	BAbS19_I05710	-	Phage portal protein, HK97 family
543	 61.38	+1	600775..601152	+	125	189023811	-	BAbS19_I05720	-	hypothetical protein
544	 62.93	+1	601139..601807	+	222	189023812	-	BAbS19_I05730	-	Phage prohead protease HK97
545	 59.92	0	601829..603103	+	424	189023813	-	BAbS19_I05740	-	Phage major capsid protein, HK97 family
546	 58.91	0	603268..603834	+	188	189023814	-	BAbS19_I05750	-	hypothetical protein
547	 58.11	0	603831..604169	+	112	189023815	-	BAbS19_I05760	-	Phage head-tail adaptor, putative
548	 57.68	0	604166..604699	+	177	189023816	-	BAbS19_I05770	-	hypothetical protein
549	 58.21	0	604740..605153	+	137	189023817	-	BAbS19_I05780	-	hypothetical protein
550	 61.40	+1	605150..605491	+	113	189023818	-	BAbS19_I05790	-	hypothetical protein
551	 63.55	+1	605710..606255	+	181	189023819	-	BAbS19_I05800	-	phage minor tail protein H
552	 59.08	0	606258..606890	+	210	189023820	-	BAbS19_I05810	-	hypothetical protein
553	 61.86	+1	606887..607573	+	228	189023821	-	BAbS19_I05820	-	hypothetical protein
554	 64.54	+1	607758..608180	+	140	189023822	-	BAbS19_I05830	-	NLP/P60
555	 56.04	0	612112..612318	+	68	189023823	-	BAbS19_I05860	-	hypothetical protein
556	 62.63	+1	612480..612776	+	98	189023824	-	BAbS19_I05870	-	hypothetical protein
557	 57.97	0	612855..613544	+	229	189023825	-	BAbS19_I05880	-	Transcriptional regulatory protein PHOP
558	 58.66	0	613694..614929	+	411	189023826	-	BAbS19_I05890	-	sensor histidine kinase
559	 59.82	0	615023..615475	+	150	189023827	-	BAbS19_I05900	-	outer membrane lipoprotein-related protein
560	 61.84	+1	615576..616715	+	379	189023828	-	BAbS19_I05910	-	TPR repeat-containing protein
561	 59.44	0	616712..617209	+	165	189023829	-	BAbS19_I05920	-	CcmE/CycJ protein
562	 60.04	0	617229..619220	+	663	189023830	-	BAbS19_I05930	-	Cytochrome C-type biogenesis protein CYCK
563	 55.56	0	619217..619693	+	158	189023831	-	BAbS19_I05940	-	Cytochrome C biogenesis protein
564	 60.51	0	619835..621376	+	513	189023832	-	BAbS19_I05950	-	Serine protease, V8 family
565	 60.03	0	621470..622177	+	235	189023833	-	BAbS19_I05960	-	Transcriptional regulatory protein
566	 58.90	0	622177..623580	+	467	189023834	-	BAbS19_I05970	-	sensor histidine kinase
567	 58.30	0	623703..626654	+	983	189023835	-	BAbS19_I05980	-	Rhodopsin-like GPCR superfamily
568	 50.13	-2	626699..628978	-	759	189023836	-	BAbS19_I05990	-	LPSA protein
569	 60.71	0	629081..631432	-	783	189023837	-	BAbS19_I06000	-	sensory box histidine kinase
570	 59.39	0	631823..634474	-	883	189023838	-	BAbS19_I06010	-	zinc-binding region
571	 58.80	0	634643..635659	+	338	189023839	-	BAbS19_I06020	-	Protein of unknown function DUF6
572	 58.87	0	635664..636920	-	418	189023840	-	BAbS19_I06030	-	General substrate transporter
573	 61.51	+1	637082..637954	-	290	189023841	-	BAbS19_I06040	-	DNA polymerase, bacteriophage-type
574	 59.22	0	638343..640034	+	563	189023842	-	BAbS19_I06050	-	electron transfer flavoprotein, oxidoreductase
575	 59.44	0	640150..641118	-	322	189023843	-	BAbS19_I06060	-	Endonuclease/exonuclease/phosphatase family
576	 58.48	0	641287..642789	-	500	189023844	-	BAbS19_I06070	-	Purine and other phosphorylase, family 1
577	 51.77	-1	642997..643278	+	93	189023845	-	BAbS19_I06080	-	hypothetical protein
578	 54.57	0	643356..644066	+	236	189023846	-	BAbS19_I06090	-	Glutathione S-transferase, N-terminal
579	 58.05	0	644125..644472	-	115	189023847	-	BAbS19_I06100	-	hypothetical protein
580	 54.70	0	644469..644702	-	77	189023848	-	BAbS19_I06110	-	hypothetical protein
581	 56.98	0	644972..645229	+	85	189023849	-	BAbS19_I06120	-	hypothetical protein
582	 56.42	0	645289..645942	-	217	189023850	-	BAbS19_I06130	-	Protein of unknown function DUF161
583	 57.76	0	646716..647366	+	216	189023851	-	BAbS19_I06140	-	Antifreeze protein, type I
584	 61.19	0	647411..647830	-	139	189023852	-	BAbS19_I06150	-	Protein of unknown function DUF423
585	 55.82	0	647803..648936	-	377	189023853	-	BAbS19_I06160	-	Aminotransferase, class-II
586	 52.21	-1	649299..650225	-	308	189023854	-	BAbS19_I06170	-	Phage integrase
587	 57.45	0	650499..651464	-	321	189023855	-	BAbS19_I06180	-	Porin
588	 57.02	0	652298..653458	-	386	189023856	-	BAbS19_I06190	-	hypothetical protein
589	 53.74	-1	653536..654177	+	213	189023857	-	BAbS19_I06200	-	hypothetical protein
590	 57.99	0	654494..655150	+	218	189023858	-	BAbS19_I06210	-	hypothetical protein
591	 59.65	0	655213..657351	-	712	189023859	-	BAbS19_I06220	-	transglycosylase SLT domain protein
592	 56.92	0	657746..658627	+	293	189023860	-	BAbS19_I06230	-	Dihydrodipicolinate synthetase
593	 55.77	0	658718..659194	+	158	189023861	-	BAbS19_I06240	-	SmpB protein
594	 58.18	0	659430..660101	-	223	189023862	-	BAbS19_I06250	-	Uracil-DNA glycosylase superfamily
595	 54.34	0	660132..660707	-	191	189023863	-	BAbS19_I06260	-	Protein of unknown function DUF88
596	 35.26	-2	660907..661062	-	51	189023864	-	BAbS19_I06270	-	hypothetical protein
597	 56.22	0	661104..661505	+	133	189023865	-	BAbS19_I06280	-	RNA polymerase, omega subunit
598	 58.34	0	661836..663998	+	720	189023866	-	BAbS19_I06290	-	RelA/SpoT family protein
599	 60.45	0	664006..664584	+	192	189023867	-	BAbS19_I06300	-	orotate phosphoribosyltransferase
600	 56.35	0	664744..665499	+	251	189023868	-	BAbS19_I06310	-	Cyclic nucleotide-binding domain protein
601	 57.23	0	665880..667214	+	444	189023869	-	BAbS19_I06320	-	Oxygen-independent coproporphyrinogen III oxidase HemN
602	 59.24	0	667398..668609	-	403	189023870	-	BAbS19_I06330	-	Major facilitator superfamily (MFS)
603	 58.51	0	668831..669700	+	289	189023871	-	BAbS19_I06340	-	Transcriptional regulator, ARAC family
604	 61.11	0	669750..670325	+	191	189023872	-	BAbS19_I06350	-	hypothetical protein
605	 54.81	0	670322..670726	+	134	189023873	-	BAbS19_I06360	-	Holo-acyl carrier protein synthase
606	 56.58	0	670837..671619	+	260	189023874	-	BAbS19_I06370	-	Bacterial signal peptidase S26A
607	 58.81	0	671588..672325	+	245	189023875	-	BAbS19_I06380	-	Ribonuclease III family
608	 57.59	0	672470..673405	+	311	189023876	-	BAbS19_I06390	-	GTP-binding protein Era
609	 59.01	0	673432..674175	+	247	189023877	-	BAbS19_I06400	-	Recombination protein O, RecO
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.