IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
475	 54.55	0	534866..535096	+	76	189023743	-	BAbS19_I05020	-	Transposase
476	 53.17	-1	535347..535472	+	41	189023744	-	BAbS19_I05030	-	P1 ISBm2
477	 56.44	0	535740..536189	+	149	189023745	-	BAbS19_I05040	-	Transposase
478	 46.30	-2	536400..536507	+	35	189023746	-	BAbS19_I05050	-	Transposase
479	 45.13	-2	536525..537304	-	259	189023747	-	BAbS19_I05060	-	Formyl transferase, N-terminal
480	 44.56	-2	537331..538185	-	284	189023748	-	BAbS19_I05070	-	perosamine synthetase WbkB
481	 49.01	-2	538182..538940	-	252	189023749	-	BAbS19_I05080	-	ABC transporter
482	 45.99	-2	538937..539734	-	265	189023750	-	BAbS19_I05090	-	O-antigen export system permease protein RFBD
483	 47.28	-2	539734..540837	-	367	189023751	-	BAbS19_I05100	-	DegT/DnrJ/EryC1/StrS aminotransferase
484	 47.93	-2	540845..541933	-	362	189023752	-	BAbS19_I05110	-	Short-chain dehydrogenase/reductase SDR
485	 60.37	0	542452..542880	+	142	189023753	-	BAbS19_I05120	-	ISBm1, transposase orfA
486	 57.22	0	543209..543589	+	126	189023754	-	BAbS19_I05130	-	Transposase
487	 49.44	-2	543637..543996	+	119	189023755	-	BAbS19_I05140	-	Transposase
488	 58.54	0	544066..544434	+	122	189023756	-	BAbS19_I05150	-	Transposase
489	 49.45	-2	544551..544823	+	90	189023757	-	BAbS19_I05160	-	Transposase, IS4
490	 44.13	-2	545257..546312	+	351	189023758	-	BAbS19_I05170	-	Glycosyl transferase, group 1
491	 57.18	0	546370..546738	+	122	189023759	-	BAbS19_I05180	-	IS5 family element, transposase orfA
492	 47.37	-2	546834..547175	+	113	189023760	-	BAbS19_I05190	-	IS5 family element, transposase orfB
493	 54.35	0	547639..547776	-	45	189023761	-	BAbS19_I05200	-	Integrase, catalytic domain protein
494	 57.79	0	548329..548745	+	138	189023762	-	BAbS19_I05210	-	Transposase, IS4
495	 54.33	0	549105..549404	+	99	189023763	-	BAbS19_I05220	-	Transposase
496	 50.74	-1	549570..550925	+	451	189023764	-	BAbS19_I05230	-	Phosphomannomutase
497	 51.16	-1	550996..552420	+	474	189023765	-	BAbS19_I05240	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
498	 51.24	-1	552453..553625	+	390	189023766	-	BAbS19_I05250	-	ManA, mannose-6-phosphate isomerase
499	 51.17	-1	553708..554817	+	369	189023767	-	BAbS19_I05260	-	Glycosyl transferase, group 1
500	 57.21	0	555671..557044	+	457	189023768	-	BAbS19_I05270	-	ATP/GTP-binding site motif A (P-loop)
501	 56.89	0	557065..558066	+	333	189023769	-	BAbS19_I05280	-	Tetracycline resistance protein TetB
502	 57.11	0	558145..559107	+	320	189023770	-	BAbS19_I05290	-	Periplasmic binding protein/LacI transcriptional regulator
503	 57.74	0	559165..560217	+	350	189023771	-	BAbS19_I05300	-	iolE protein
504	 59.02	0	560225..561322	+	365	189023772	-	BAbS19_I05310	-	oxidoreductase
505	 56.27	0	561364..562671	-	435	189023773	-	BAbS19_I05320	-	Xylose isomerase
506	 61.78	+1	562718..564169	-	483	189023774	-	BAbS19_I05330	-	Carbohydrate kinase, FGGY
507	 59.21	0	564202..565233	-	343	189023775	-	BAbS19_I05340	-	transcriptional regulator
508	 59.17	0	565495..565854	-	119	189023776	-	BAbS19_I05350	-	Transcriptional Regulator, ARAC family
509	 57.41	0	565920..566459	-	179	189023777	-	BAbS19_I05360	-	Transcriptional Regulator, ARAC family
510	 58.81	0	567027..568490	-	487	189023778	-	BAbS19_I05370	-	Aldehyde dehydrogenase
511	 59.66	0	568642..570324	-	560	189023779	-	BAbS19_I05380	-	Glucose-methanol-choline oxidoreductase
512	 58.09	0	570327..570932	-	201	189023780	-	BAbS19_I05390	-	Bacterial regulatory protein TetR, HTH motif
513	 60.58	0	571069..572136	+	355	189023781	-	BAbS19_I05400	-	hypothetical protein
514	 58.81	0	572181..572651	+	156	189023782	-	BAbS19_I05410	-	Prokaryotic transcription elongation factor GreA/GreB
515	 50.00	-2	572648..573037	-	129	189023783	-	BAbS19_I05420	-	Death-on-curing family protein
516	 51.08	-1	573034..573264	-	76	189023784	-	BAbS19_I05430	-	Transcriptional regulator AbrB
517	 55.79	0	573325..574317	-	330	189023785	-	BAbS19_I05440	-	Mg2+ transporter protein, CorA-like protein
518	 59.78	0	575876..576427	+	183	189023786	-	BAbS19_I05470	-	Cyanate transport protein CYNX
519	 60.06	0	576484..576846	-	120	189023787	-	BAbS19_I05480	-	hypothetical protein
520	 59.59	0	577182..578693	+	503	189023788	-	BAbS19_I05490	-	ATP/GTP-binding site motif A (P-loop)
521	 60.67	0	578883..579599	-	238	189023789	-	BAbS19_I05500	-	ErfK/YbiS/YcfS/YnhG family protein
522	 58.26	0	579902..580555	-	217	189023790	-	BAbS19_I05510	-	haloacid dehalogenase
523	 53.83	-1	580778..581377	+	199	189023791	-	BAbS19_I05520	-	Manganese and iron superoxide dismutase
524	 60.12	0	581549..581884	-	111	189023792	-	BAbS19_I05530	-	Metallo-phosphoesterase
525	 57.75	0	582002..584110	-	702	189023793	-	BAbS19_I05540	-	PtrB, protease
526	 54.31	0	584683..585111	+	142	189023794	-	BAbS19_I05550	-	transcriptional regulatory protein MucR
527	 54.81	0	585319..585630	-	103	189023795	-	BAbS19_I05560	-	Hypothetical Cytosolic Protein
528	 57.02	0	585811..586266	+	151	189023796	-	BAbS19_I05570	-	DnaA domain protein
529	 59.50	0	586263..587057	+	264	189023797	-	BAbS19_I05580	-	Hypothetical Cytosolic Protein
530	 60.21	0	587168..588484	+	438	189023798	-	BAbS19_I05590	-	Amidase
531	 59.62	0	588525..588950	-	141	189023799	-	BAbS19_I05600	-	hypothetical protein
532	 56.44	0	589030..589479	-	149	189023800	-	BAbS19_I05610	-	hypothetical protein
533	 59.29	0	589770..591599	+	609	189023801	-	BAbS19_I05620	-	sensor histidine kinase
534	 60.37	0	591526..592542	+	338	189023802	-	BAbS19_I05630	-	Putative peptidoglycan binding domain 1
535	 56.90	0	592556..592903	+	115	189023803	-	BAbS19_I05640	-	hypothetical protein
536	 58.50	0	592914..593990	-	358	189023804	-	BAbS19_I05650	-	hypothetical protein
537	 54.88	0	594188..594730	-	180	189023805	-	BAbS19_I05660	-	hypothetical protein
538	 62.91	+1	594723..595334	-	203	189023806	-	BAbS19_I05670	-	hypothetical protein
539	 59.25	0	595341..597497	-	718	189023807	-	BAbS19_I05680	-	Glycosyl transferase
540	 60.04	0	597855..598367	+	170	189023808	-	BAbS19_I05690	-	hypothetical protein
541	 64.92	+2	598411..599553	+	380	189023809	-	BAbS19_I05700	-	ATP/GTP-binding site motif A (P-loop)
542	 62.06	+1	599585..600778	+	397	189023810	-	BAbS19_I05710	-	Phage portal protein, HK97 family
543	 61.38	+1	600775..601152	+	125	189023811	-	BAbS19_I05720	-	hypothetical protein
544	 62.93	+1	601139..601807	+	222	189023812	-	BAbS19_I05730	-	Phage prohead protease HK97
545	 59.92	0	601829..603103	+	424	189023813	-	BAbS19_I05740	-	Phage major capsid protein, HK97 family
546	 58.91	0	603268..603834	+	188	189023814	-	BAbS19_I05750	-	hypothetical protein
547	 58.11	0	603831..604169	+	112	189023815	-	BAbS19_I05760	-	Phage head-tail adaptor, putative
548	 57.68	0	604166..604699	+	177	189023816	-	BAbS19_I05770	-	hypothetical protein
549	 58.21	0	604740..605153	+	137	189023817	-	BAbS19_I05780	-	hypothetical protein
550	 61.40	+1	605150..605491	+	113	189023818	-	BAbS19_I05790	-	hypothetical protein
551	 63.55	+1	605710..606255	+	181	189023819	-	BAbS19_I05800	-	phage minor tail protein H
552	 59.08	0	606258..606890	+	210	189023820	-	BAbS19_I05810	-	hypothetical protein
553	 61.86	+1	606887..607573	+	228	189023821	-	BAbS19_I05820	-	hypothetical protein
554	 64.54	+1	607758..608180	+	140	189023822	-	BAbS19_I05830	-	NLP/P60
555	 56.04	0	612112..612318	+	68	189023823	-	BAbS19_I05860	-	hypothetical protein
556	 62.63	+1	612480..612776	+	98	189023824	-	BAbS19_I05870	-	hypothetical protein
557	 57.97	0	612855..613544	+	229	189023825	-	BAbS19_I05880	-	Transcriptional regulatory protein PHOP
558	 58.66	0	613694..614929	+	411	189023826	-	BAbS19_I05890	-	sensor histidine kinase
559	 59.82	0	615023..615475	+	150	189023827	-	BAbS19_I05900	-	outer membrane lipoprotein-related protein
560	 61.84	+1	615576..616715	+	379	189023828	-	BAbS19_I05910	-	TPR repeat-containing protein
561	 59.44	0	616712..617209	+	165	189023829	-	BAbS19_I05920	-	CcmE/CycJ protein
562	 60.04	0	617229..619220	+	663	189023830	-	BAbS19_I05930	-	Cytochrome C-type biogenesis protein CYCK
563	 55.56	0	619217..619693	+	158	189023831	-	BAbS19_I05940	-	Cytochrome C biogenesis protein
564	 60.51	0	619835..621376	+	513	189023832	-	BAbS19_I05950	-	Serine protease, V8 family
565	 60.03	0	621470..622177	+	235	189023833	-	BAbS19_I05960	-	Transcriptional regulatory protein
566	 58.90	0	622177..623580	+	467	189023834	-	BAbS19_I05970	-	sensor histidine kinase
567	 58.30	0	623703..626654	+	983	189023835	-	BAbS19_I05980	-	Rhodopsin-like GPCR superfamily
568	 50.13	-2	626699..628978	-	759	189023836	-	BAbS19_I05990	-	LPSA protein
569	 60.71	0	629081..631432	-	783	189023837	-	BAbS19_I06000	-	sensory box histidine kinase
570	 59.39	0	631823..634474	-	883	189023838	-	BAbS19_I06010	-	zinc-binding region
571	 58.80	0	634643..635659	+	338	189023839	-	BAbS19_I06020	-	Protein of unknown function DUF6
572	 58.87	0	635664..636920	-	418	189023840	-	BAbS19_I06030	-	General substrate transporter
573	 61.51	+1	637082..637954	-	290	189023841	-	BAbS19_I06040	-	DNA polymerase, bacteriophage-type
574	 59.22	0	638343..640034	+	563	189023842	-	BAbS19_I06050	-	electron transfer flavoprotein, oxidoreductase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.