IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
406	 63.62	+1	457736..458983	+	415	189023674	-	BAbS19_I04290	-	SAM (and some other nucleotide) binding motif
407	 57.71	0	459095..459697	-	200	189023675	-	BAbS19_I04300	-	Conserved hypothetical protein 730
408	 51.64	-1	459827..460192	+	121	189023676	-	BAbS19_I04310	-	hypothetical protein
409	 61.82	+1	460295..461593	+	432	189023677	-	BAbS19_I04320	-	Peptidoglycan-binding LysM
410	 58.24	0	461795..463681	+	628	189023678	-	BAbS19_I04330	-	ABC transporter, ATP-binding/permease protein
411	 59.51	0	463786..464484	+	232	189023679	-	BAbS19_I04340	-	Phosphatidylserine decarboxylase-related protein
412	 59.26	0	464489..465325	+	278	189023680	-	BAbS19_I04350	-	CDP-alcohol phosphatidyltransferase
413	 61.00	0	465410..466150	-	246	189023681	-	BAbS19_I04360	-	Short-chain dehydrogenase/reductase SDR
414	 58.95	0	466219..467709	-	496	189023682	-	BAbS19_I04370	-	amidophosphoribosyltransferase
415	 58.38	0	467991..468569	-	192	189023683	-	BAbS19_I04380	-	Colicin V production protein
416	 62.46	+1	468695..470098	-	467	189023684	-	BAbS19_I04390	-	RadA, DNA repair protein RadA
417	 58.57	0	470126..471631	-	501	189023685	-	BAbS19_I04400	-	replicative DNA helicase
418	 55.97	0	471830..473110	-	426	189023686	-	BAbS19_I04410	-	cyclopropane-fatty-acyl-phospholipid synthase
419	 58.25	0	473484..474053	-	189	189023687	-	BAbS19_I04420	-	Ribosomal protein L9
420	 62.28	+1	474083..475039	-	318	189023688	-	BAbS19_I04430	-	hypothetical protein
421	 58.63	0	475190..475438	-	82	189023689	-	BAbS19_I04440	-	Ribosomal protein S18
422	 61.52	+1	475441..475887	-	148	189023690	-	BAbS19_I04450	-	Ribosomal protein S6
423	 61.48	+1	476293..477237	+	314	189023691	-	BAbS19_I04460	-	Acyl transferase domain protein
424	 59.08	0	477307..478044	+	245	189023692	-	BAbS19_I04470	-	Short-chain dehydrogenase/reductase SDR
425	 53.59	-1	478318..478554	+	78	189023693	-	BAbS19_I04480	-	Acyl carrier protein (ACP)
426	 62.07	+1	478878..480140	+	420	189023694	-	BAbS19_I04490	-	Beta-ketoacyl synthase
427	 59.00	0	480365..481603	+	412	189023695	-	BAbS19_I04500	-	Protein of unknown function DUF175
428	 61.44	+1	481788..482687	+	299	189023696	-	BAbS19_I04510	-	Conserved hypothetical protein 255
429	 57.77	0	482696..483358	+	220	189023697	-	BAbS19_I04520	-	Adenylate kinase
430	 61.15	0	483385..484797	-	470	189023698	-	BAbS19_I04530	-	Modulator of DNA gyrase
431	 64.07	+1	484938..485552	-	204	189023699	-	BAbS19_I04540	-	hypothetical protein
432	 58.36	0	485734..486852	+	372	189023700	-	BAbS19_I04550	-	Cytochrome C oxidase polypeptide II
433	 59.86	0	486990..488648	+	552	189023701	-	BAbS19_I04560	-	Cytochrome c oxidase, subunit I
434	 58.05	0	489118..489813	+	231	189023702	-	BAbS19_I04570	-	protoheme IX farnesyltransferase
435	 57.79	0	490826..491704	+	292	189023703	-	BAbS19_I04600	-	Cytochrome c oxidase, subunit III
436	 60.13	0	492203..492952	+	249	189023704	-	BAbS19_I04630	-	Surf1 protein
437	 58.79	0	493061..494101	+	346	189023705	-	BAbS19_I04640	-	LytB protein
438	 58.72	0	494107..495087	+	326	189023706	-	BAbS19_I04650	-	Aminoglycoside phosphotransferase
439	 59.78	0	495084..495548	+	154	189023707	-	BAbS19_I04660	-	RNase H
440	 58.64	0	495578..496063	-	161	189023708	-	BAbS19_I04670	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
441	 59.55	0	496243..497043	-	266	189023709	-	BAbS19_I04680	-	Ribosomal protein S7
442	 59.19	0	497313..497780	+	155	189023710	-	BAbS19_I04690	-	Protein of unknown function DUF179
443	 60.14	0	497894..500788	-	964	189023711	-	BAbS19_I04700	-	PAS domain protein
444	 54.95	0	500785..501330	-	181	189023712	-	BAbS19_I04710	-	GCN5-related N-acetyltransferase
445	 59.16	0	501576..502868	-	430	189023713	-	BAbS19_I04720	-	Insulinase-like peptidase, family M16
446	 58.76	0	502922..504313	-	463	189023714	-	BAbS19_I04730	-	threonine synthase
447	 47.97	-2	504393..504515	-	40	189023715	-	BAbS19_I04740	-	hypothetical protein
448	 55.27	0	504675..505253	+	192	189023716	-	BAbS19_I04750	-	lipoprotein, putative
449	 56.27	0	505567..507201	+	544	189023717	-	BAbS19_I04760	-	EAL domain protein
450	 56.99	0	507330..507515	+	61	189023718	-	BAbS19_I04770	-	hypothetical protein
451	 59.97	0	507557..508243	-	228	189023719	-	BAbS19_I04780	-	hydrolase, haloacid dehalogenase-like family
452	 61.69	+1	508391..510097	-	568	189023720	-	BAbS19_I04790	-	Cl-channel, voltage gated
453	 59.69	0	510407..511567	+	386	189023721	-	BAbS19_I04800	-	Adenine-specific methyltransferase
454	 57.61	0	511650..512267	-	205	189023722	-	BAbS19_I04810	-	Haloacid dehalogenase-like hydrolase
455	 60.46	0	512264..513391	-	375	189023723	-	BAbS19_I04820	-	A/G-specific adenine glycosylase
456	 60.98	0	513614..514141	+	175	189023724	-	BAbS19_I04830	-	hypothetical protein
457	 53.33	-1	514198..514332	+	44	189023725	-	BAbS19_I04840	-	hypothetical protein
458	 54.28	0	514379..515032	+	217	189023726	-	BAbS19_I04850	-	DSBA oxidoreductase
459	 63.46	+1	515111..518569	+	1152	189023727	-	BAbS19_I04860	-	SMC family protein
460	 58.16	0	518611..519468	+	285	189023728	-	BAbS19_I04870	-	Cobalt-zinc-cadmium resistance protein CZCD
461	 56.83	0	519578..519943	-	121	189023729	-	BAbS19_I04880	-	putative hydroxlase
462	 60.85	0	520183..522846	+	887	189023730	-	BAbS19_I04890	-	PEP-utilizing enzyme
463	 57.26	0	523060..523878	+	272	189023731	-	BAbS19_I04900	-	Polysaccharide deacetylase
464	 60.69	0	524173..524490	-	105	189023732	-	BAbS19_I04910	-	hypothetical protein
465	 59.01	0	524783..525631	+	282	189023733	-	BAbS19_I04920	-	hypothetical protein
466	 61.26	+1	525632..526537	-	301	189023734	-	BAbS19_I04930	-	Beta-lactamase-like protein
467	 59.50	0	526738..527337	+	199	189023735	-	BAbS19_I04940	-	BioY protein
468	 55.88	0	527473..527982	+	169	189023736	-	BAbS19_I04950	-	Ureidoglycolate hydrolase
469	 58.26	0	527994..528350	+	118	189023737	-	BAbS19_I04960	-	Transthyretin
470	 57.95	0	528421..529257	+	278	189023738	-	BAbS19_I04970	-	ribonuclease III
471	 56.66	0	529794..531662	+	622	189023739	-	BAbS19_I04980	-	Polysaccharide biosynthesis protein CapD
472	 55.95	0	531649..532656	-	335	189023740	-	BAbS19_I04990	-	Glycosyl transferase, family 4
473	 58.36	0	533315..534133	+	272	189023741	-	BAbS19_I05000	-	Transposase
474	 58.25	0	534144..534452	+	102	189023742	-	BAbS19_I05010	-	Bacterial regulatory protein LacI, HTH motif
475	 54.55	0	534866..535096	+	76	189023743	-	BAbS19_I05020	-	Transposase
476	 53.17	-1	535347..535472	+	41	189023744	-	BAbS19_I05030	-	P1 ISBm2
477	 56.44	0	535740..536189	+	149	189023745	-	BAbS19_I05040	-	Transposase
478	 46.30	-2	536400..536507	+	35	189023746	-	BAbS19_I05050	-	Transposase
479	 45.13	-2	536525..537304	-	259	189023747	-	BAbS19_I05060	-	Formyl transferase, N-terminal
480	 44.56	-2	537331..538185	-	284	189023748	-	BAbS19_I05070	-	perosamine synthetase WbkB
481	 49.01	-2	538182..538940	-	252	189023749	-	BAbS19_I05080	-	ABC transporter
482	 45.99	-2	538937..539734	-	265	189023750	-	BAbS19_I05090	-	O-antigen export system permease protein RFBD
483	 47.28	-2	539734..540837	-	367	189023751	-	BAbS19_I05100	-	DegT/DnrJ/EryC1/StrS aminotransferase
484	 47.93	-2	540845..541933	-	362	189023752	-	BAbS19_I05110	-	Short-chain dehydrogenase/reductase SDR
485	 60.37	0	542452..542880	+	142	189023753	-	BAbS19_I05120	-	ISBm1, transposase orfA
486	 57.22	0	543209..543589	+	126	189023754	-	BAbS19_I05130	-	Transposase
487	 49.44	-2	543637..543996	+	119	189023755	-	BAbS19_I05140	-	Transposase
488	 58.54	0	544066..544434	+	122	189023756	-	BAbS19_I05150	-	Transposase
489	 49.45	-2	544551..544823	+	90	189023757	-	BAbS19_I05160	-	Transposase, IS4
490	 44.13	-2	545257..546312	+	351	189023758	-	BAbS19_I05170	-	Glycosyl transferase, group 1
491	 57.18	0	546370..546738	+	122	189023759	-	BAbS19_I05180	-	IS5 family element, transposase orfA
492	 47.37	-2	546834..547175	+	113	189023760	-	BAbS19_I05190	-	IS5 family element, transposase orfB
493	 54.35	0	547639..547776	-	45	189023761	-	BAbS19_I05200	-	Integrase, catalytic domain protein
494	 57.79	0	548329..548745	+	138	189023762	-	BAbS19_I05210	-	Transposase, IS4
495	 54.33	0	549105..549404	+	99	189023763	-	BAbS19_I05220	-	Transposase
496	 50.74	-1	549570..550925	+	451	189023764	-	BAbS19_I05230	-	Phosphomannomutase
497	 51.16	-1	550996..552420	+	474	189023765	-	BAbS19_I05240	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
498	 51.24	-1	552453..553625	+	390	189023766	-	BAbS19_I05250	-	ManA, mannose-6-phosphate isomerase
499	 51.17	-1	553708..554817	+	369	189023767	-	BAbS19_I05260	-	Glycosyl transferase, group 1
500	 57.21	0	555671..557044	+	457	189023768	-	BAbS19_I05270	-	ATP/GTP-binding site motif A (P-loop)
501	 56.89	0	557065..558066	+	333	189023769	-	BAbS19_I05280	-	Tetracycline resistance protein TetB
502	 57.11	0	558145..559107	+	320	189023770	-	BAbS19_I05290	-	Periplasmic binding protein/LacI transcriptional regulator
503	 57.74	0	559165..560217	+	350	189023771	-	BAbS19_I05300	-	iolE protein
504	 59.02	0	560225..561322	+	365	189023772	-	BAbS19_I05310	-	oxidoreductase
505	 56.27	0	561364..562671	-	435	189023773	-	BAbS19_I05320	-	Xylose isomerase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.