IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
343	 57.24	0	397206..397820	+	204	189023611	-	BAbS19_I03660	-	DSBA oxidoreductase
344	 60.54	0	397869..399026	-	385	189023612	-	BAbS19_I03670	-	aldehyde dehydrogenase family protein
345	 59.39	0	399512..400597	+	361	189023613	-	BAbS19_I03680	-	Ada, ada regulatory protein
346	 52.99	-1	400779..401129	+	116	189023614	-	BAbS19_I03690	-	Conserved hypothetical protein, ArsC related
347	 60.06	0	401466..402509	+	347	189023615	-	BAbS19_I03700	-	hypothetical protein
348	 61.78	+1	402596..403843	+	415	189023616	-	BAbS19_I03710	-	Tetracycline resistance protein
349	 55.93	0	404065..405312	+	415	189023617	-	BAbS19_I03720	-	bacteroid development protein BacA
350	 59.59	0	405351..406424	-	357	189023618	-	BAbS19_I03730	-	Polysaccharide deacetylase
351	 62.50	+1	406595..407266	+	223	189023619	-	BAbS19_I03740	-	hypothetical protein
352	 61.57	+1	407288..408739	+	483	189023620	-	BAbS19_I03750	-	GTP-binding protein EngA
353	 57.02	0	408898..410214	+	438	189023621	-	BAbS19_I03760	-	Heat shock protein Hsp70
354	 52.38	-1	410303..410428	-	41	189023622	-	BAbS19_I03770	-	hypothetical protein
355	 60.39	0	410650..411939	+	429	189023623	-	BAbS19_I03780	-	ATP/GTP-binding site motif A (P-loop)
356	 56.14	0	412210..412608	+	132	189023624	-	BAbS19_I03790	-	ATP synthase I
357	 55.87	0	412716..413465	+	249	189023625	-	BAbS19_I03800	-	ATP synthase subunit A
358	 62.28	+1	413533..413760	+	75	189023626	-	BAbS19_I03810	-	ATP synthase subunit C
359	 63.00	+1	413932..414558	+	208	189023627	-	BAbS19_I03820	-	H+-transporting two-sector ATPase, B/B' subunit
360	 56.25	0	414569..415048	+	159	189023628	-	BAbS19_I03830	-	H+-transporting two-sector ATPase, B/B' subunit
361	 63.76	+1	415171..415755	-	194	189023629	-	BAbS19_I03840	-	Ribonuclease HII/HIII
362	 61.13	0	416010..417182	-	390	189023630	-	BAbS19_I03850	-	Protein of unknown function DUF85
363	 62.33	+1	417318..417824	+	168	189023631	-	BAbS19_I03860	-	hypothetical protein
364	 58.23	0	417904..418140	-	78	189023632	-	BAbS19_I03870	-	hypothetical protein
365	 56.14	0	418320..418547	-	75	189023633	-	BAbS19_I03880	-	hypothetical protein
366	 60.22	0	418954..419853	-	299	189023634	-	BAbS19_I03890	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
367	 60.75	0	419883..420068	-	61	189023635	-	BAbS19_I03900	-	hypothetical protein
368	 59.48	0	420535..422745	-	736	189023636	-	BAbS19_I03910	-	Clp protease
369	 65.26	+2	423035..423817	-	260	189023637	-	BAbS19_I03920	-	Methyltransferase
370	 53.07	-1	423814..424041	-	75	189023638	-	BAbS19_I03930	-	hypothetical protein
371	 61.95	+1	424310..425326	+	338	189023639	-	BAbS19_I03940	-	Polyprenyl synthetase
372	 59.11	0	425630..427495	+	621	189023640	-	BAbS19_I03950	-	TPR repeat-containing protein
373	 57.10	0	427623..428573	+	316	189023641	-	BAbS19_I03960	-	Glycyl-tRNA synthetase alpha subunit
374	 54.39	0	428579..428692	+	37	189023642	-	BAbS19_I03970	-	Glycyl-tRNA synthetase, beta subunit
375	 59.85	0	428692..431025	+	777	189023643	-	BAbS19_I03980	-	Glycyl-tRNA synthetase, beta subunit
376	 64.92	+2	431164..432135	+	323	189023644	-	BAbS19_I03990	-	Sua5/YciO/YrdC/YwlC protein family
377	 59.02	0	432161..433573	+	470	189023645	-	BAbS19_I04000	-	oxidoreductase, FAD-binding
378	 52.52	-1	433611..433928	-	105	189023646	-	BAbS19_I04010	-	Plasmid stabilization system
379	 54.79	0	433925..434185	-	86	189023647	-	BAbS19_I04020	-	hypothetical protein
380	 62.08	+1	434433..434999	+	188	189023648	-	BAbS19_I04030	-	hypothetical protein
381	 60.69	0	435142..435894	-	250	189023649	-	BAbS19_I04040	-	Enoyl-CoA hydratase/isomerase
382	 61.16	0	435897..437675	-	592	189023650	-	BAbS19_I04050	-	Acyl-CoA dehydrogenase
383	 57.85	0	437993..439138	+	381	189023651	-	BAbS19_I04060	-	GGDEF domain protein
384	 61.14	0	439151..440434	-	427	189023652	-	BAbS19_I04070	-	Phosphoribosylglycinamide synthetase
385	 61.48	+1	440579..441580	+	333	189023653	-	BAbS19_I04080	-	UbiA prenyltransferase
386	 60.13	0	441620..442231	-	203	189023654	-	BAbS19_I04090	-	Pyridoxamine 5'-phosphate oxidase
387	 56.26	0	442505..442975	+	156	189023655	-	BAbS19_I04100	-	hypothetical protein
388	 60.19	0	443120..444061	+	313	189023656	-	BAbS19_I04110	-	Heat shock protein DnaJ
389	 48.15	-2	444065..444172	-	35	189023657	-	BAbS19_I04120	-	hypothetical protein
390	 56.90	0	444205..445023	+	272	189023658	-	BAbS19_I04130	-	Short-chain dehydrogenase/reductase SDR
391	 58.71	0	445138..445728	+	196	189023659	-	BAbS19_I04140	-	Phosphoglycerate/bisphosphoglycerate mutase
392	 53.33	-1	445990..446199	+	69	189023660	-	BAbS19_I04150	-	ATP/GTP-binding site motif A (P-loop)
393	 55.87	0	446671..446883	+	70	189023661	-	BAbS19_I04160	-	hypothetical protein
394	 60.06	0	446960..447640	+	226	189023662	-	BAbS19_I04170	-	putative lipoprotein
395	 50.00	-2	447785..448036	-	83	189023663	-	BAbS19_I04180	-	hypothetical protein
396	 60.82	0	448311..449405	+	364	189023664	-	BAbS19_I04190	-	Chorismate synthase
397	 60.22	0	449541..450656	+	371	189023665	-	BAbS19_I04200	-	3,4-Dihydroxy-2-butanone 4-phosphate synthase
398	 58.25	0	450872..451822	+	316	189023666	-	BAbS19_I04210	-	Histone deacetylase family
399	 56.86	0	451827..452081	+	84	189023667	-	BAbS19_I04220	-	Exonuclease VII, small subunit
400	 57.61	0	452088..452606	-	172	189023668	-	BAbS19_I04230	-	DedA family
401	 52.87	-1	452848..453108	-	86	189023669	-	BAbS19_I04240	-	Transglycosylase-associated protein
402	 63.78	+1	453268..453822	+	184	189023670	-	BAbS19_I04250	-	Ribosomal protein P2
403	 60.94	0	454026..454898	+	290	189023671	-	BAbS19_I04260	-	Protein of unknown function DUF209
404	 62.01	+1	455041..456972	+	643	189023672	-	BAbS19_I04270	-	1-deoxy-D-xylulose-5-phosphate synthase
405	 61.81	+1	456978..457739	+	253	189023673	-	BAbS19_I04280	-	Cell division protein FtsJ
406	 63.62	+1	457736..458983	+	415	189023674	-	BAbS19_I04290	-	SAM (and some other nucleotide) binding motif
407	 57.71	0	459095..459697	-	200	189023675	-	BAbS19_I04300	-	Conserved hypothetical protein 730
408	 51.64	-1	459827..460192	+	121	189023676	-	BAbS19_I04310	-	hypothetical protein
409	 61.82	+1	460295..461593	+	432	189023677	-	BAbS19_I04320	-	Peptidoglycan-binding LysM
410	 58.24	0	461795..463681	+	628	189023678	-	BAbS19_I04330	-	ABC transporter, ATP-binding/permease protein
411	 59.51	0	463786..464484	+	232	189023679	-	BAbS19_I04340	-	Phosphatidylserine decarboxylase-related protein
412	 59.26	0	464489..465325	+	278	189023680	-	BAbS19_I04350	-	CDP-alcohol phosphatidyltransferase
413	 61.00	0	465410..466150	-	246	189023681	-	BAbS19_I04360	-	Short-chain dehydrogenase/reductase SDR
414	 58.95	0	466219..467709	-	496	189023682	-	BAbS19_I04370	-	amidophosphoribosyltransferase
415	 58.38	0	467991..468569	-	192	189023683	-	BAbS19_I04380	-	Colicin V production protein
416	 62.46	+1	468695..470098	-	467	189023684	-	BAbS19_I04390	-	RadA, DNA repair protein RadA
417	 58.57	0	470126..471631	-	501	189023685	-	BAbS19_I04400	-	replicative DNA helicase
418	 55.97	0	471830..473110	-	426	189023686	-	BAbS19_I04410	-	cyclopropane-fatty-acyl-phospholipid synthase
419	 58.25	0	473484..474053	-	189	189023687	-	BAbS19_I04420	-	Ribosomal protein L9
420	 62.28	+1	474083..475039	-	318	189023688	-	BAbS19_I04430	-	hypothetical protein
421	 58.63	0	475190..475438	-	82	189023689	-	BAbS19_I04440	-	Ribosomal protein S18
422	 61.52	+1	475441..475887	-	148	189023690	-	BAbS19_I04450	-	Ribosomal protein S6
423	 61.48	+1	476293..477237	+	314	189023691	-	BAbS19_I04460	-	Acyl transferase domain protein
424	 59.08	0	477307..478044	+	245	189023692	-	BAbS19_I04470	-	Short-chain dehydrogenase/reductase SDR
425	 53.59	-1	478318..478554	+	78	189023693	-	BAbS19_I04480	-	Acyl carrier protein (ACP)
426	 62.07	+1	478878..480140	+	420	189023694	-	BAbS19_I04490	-	Beta-ketoacyl synthase
427	 59.00	0	480365..481603	+	412	189023695	-	BAbS19_I04500	-	Protein of unknown function DUF175
428	 61.44	+1	481788..482687	+	299	189023696	-	BAbS19_I04510	-	Conserved hypothetical protein 255
429	 57.77	0	482696..483358	+	220	189023697	-	BAbS19_I04520	-	Adenylate kinase
430	 61.15	0	483385..484797	-	470	189023698	-	BAbS19_I04530	-	Modulator of DNA gyrase
431	 64.07	+1	484938..485552	-	204	189023699	-	BAbS19_I04540	-	hypothetical protein
432	 58.36	0	485734..486852	+	372	189023700	-	BAbS19_I04550	-	Cytochrome C oxidase polypeptide II
433	 59.86	0	486990..488648	+	552	189023701	-	BAbS19_I04560	-	Cytochrome c oxidase, subunit I
434	 58.05	0	489118..489813	+	231	189023702	-	BAbS19_I04570	-	protoheme IX farnesyltransferase
435	 57.79	0	490826..491704	+	292	189023703	-	BAbS19_I04600	-	Cytochrome c oxidase, subunit III
436	 60.13	0	492203..492952	+	249	189023704	-	BAbS19_I04630	-	Surf1 protein
437	 58.79	0	493061..494101	+	346	189023705	-	BAbS19_I04640	-	LytB protein
438	 58.72	0	494107..495087	+	326	189023706	-	BAbS19_I04650	-	Aminoglycoside phosphotransferase
439	 59.78	0	495084..495548	+	154	189023707	-	BAbS19_I04660	-	RNase H
440	 58.64	0	495578..496063	-	161	189023708	-	BAbS19_I04670	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
441	 59.55	0	496243..497043	-	266	189023709	-	BAbS19_I04680	-	Ribosomal protein S7
442	 59.19	0	497313..497780	+	155	189023710	-	BAbS19_I04690	-	Protein of unknown function DUF179
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.