IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
305	 62.71	+1	357382..358089	+	235	189023573	-	BAbS19_I03260	-	LrgB-like protein
306	 58.94	0	358635..359876	+	413	189023574	-	BAbS19_I03270	-	Esterase/lipase/thioesterase, active site
307	 61.00	0	359963..360844	+	293	189023575	-	BAbS19_I03280	-	Pantoate-beta-alanine ligase
308	 62.44	+1	360846..361673	+	275	189023576	-	BAbS19_I03290	-	Ketopantoate hydroxymethyltransferase
309	 54.83	0	361858..362634	-	258	189023577	-	BAbS19_I03300	-	Ferredoxin-NADP reductase
310	 53.76	-1	362812..362997	-	61	189023578	-	BAbS19_I03310	-	Manganese and iron superoxide dismutase
311	 51.02	-1	363163..363309	-	48	189023579	-	BAbS19_I03320	-	hypothetical protein
312	 52.73	-1	363426..364523	+	365	189023580	-	BAbS19_I03330	-	Orn/DAP/Arg decarboxylase, family 2
313	 55.23	0	364704..365945	+	413	189023581	-	BAbS19_I03340	-	ATP/GTP-binding site motif A (P-loop)
314	 61.32	+1	366201..367229	-	342	189023582	-	BAbS19_I03350	-	ATP/GTP-binding site motif A (P-loop)
315	 43.52	-2	367284..367391	-	35	189023583	-	BAbS19_I03360	-	hypothetical protein
316	 59.39	0	369143..369664	-	173	189023584	-	BAbS19_I03390	-	invasion protein B
317	 58.48	0	369912..371279	+	455	189023585	-	BAbS19_I03400	-	Gliadin, alpha/beta
318	 55.92	0	371276..371917	+	213	189023586	-	BAbS19_I03410	-	Bacterial regulatory protein, LuxR family
319	 54.24	0	372205..372687	+	160	189023587	-	BAbS19_I03420	-	hypothetical protein
320	 59.46	0	372699..374267	+	522	189023588	-	BAbS19_I03430	-	TRAP dicarboxylate transporter, DctM subunit, hypothetical
321	 58.51	0	374329..375456	+	375	189023589	-	BAbS19_I03440	-	TRAP dicarboxylate transporter-DctP subunit
322	 59.83	0	375539..376357	-	272	189023590	-	BAbS19_I03450	-	hypothetical protein
323	 61.13	0	376370..377797	-	475	189023591	-	BAbS19_I03460	-	Polysaccharide deacetylase
324	 56.52	0	378064..378339	+	91	189023592	-	BAbS19_I03470	-	hypothetical protein
325	 61.05	0	378345..379823	+	492	189023593	-	BAbS19_I03480	-	xanthine dehydrogenase, hypothetical
326	 59.73	0	379836..381953	+	705	189023594	-	BAbS19_I03490	-	Xanthine dehydrogenase
327	 64.20	+1	381978..382139	+	53	189023595	-	BAbS19_I03500	-	Xanthine dehydrogenase
328	 58.99	0	382144..383016	+	290	189023596	-	BAbS19_I03510	-	XdhC protein
329	 58.36	0	383097..384011	-	304	189023597	-	BAbS19_I03520	-	Transcriptional regulator, LysR family
330	 58.43	0	384192..385442	+	416	189023598	-	BAbS19_I03530	-	Cytochrome c heme-binding site
331	 58.70	0	385439..386743	+	434	189023599	-	BAbS19_I03540	-	Amidohydrolase
332	 62.08	+1	386823..388109	+	428	189023600	-	BAbS19_I03550	-	putative hydroxypyruvate reductase
333	 53.46	-1	388090..388248	-	52	189023601	-	BAbS19_I03560	-	Cytochrome oxidase maturation protein cbb3-type
334	 60.82	0	388245..390503	-	752	189023602	-	BAbS19_I03570	-	nitrogen fixation protein FixI, hypothetical
335	 56.83	0	390500..390997	-	165	189023603	-	BAbS19_I03580	-	nitrogen fixation protein FixH
336	 58.28	0	390997..392547	-	516	189023604	-	BAbS19_I03590	-	4Fe-4S ferredoxin, iron-sulfur binding domain protein
337	 60.88	0	392699..393562	-	287	189023605	-	BAbS19_I03600	-	CcoP, cytochrome c oxidase, cbb3-type, subunit III
338	 49.69	-2	393555..393713	-	52	189023606	-	BAbS19_I03610	-	cytochrome c oxidase, cbb3-type, CcoQ subunit
339	 58.88	0	393728..394459	-	243	189023607	-	BAbS19_I03620	-	Cytochrome C oxidase, mono-heme subunit/FixO
340	 57.87	0	394474..396099	-	541	189023608	-	BAbS19_I03630	-	Cytochrome c oxidase cbb3-type
341	 58.82	0	396317..396775	-	152	189023610	-	BAbS19_I03640	-	Ferric-uptake regulator
342	 52.02	-1	396774..397094	+	106	189023609	-	BAbS19_I03650	-	hypothetical protein
343	 57.24	0	397206..397820	+	204	189023611	-	BAbS19_I03660	-	DSBA oxidoreductase
344	 60.54	0	397869..399026	-	385	189023612	-	BAbS19_I03670	-	aldehyde dehydrogenase family protein
345	 59.39	0	399512..400597	+	361	189023613	-	BAbS19_I03680	-	Ada, ada regulatory protein
346	 52.99	-1	400779..401129	+	116	189023614	-	BAbS19_I03690	-	Conserved hypothetical protein, ArsC related
347	 60.06	0	401466..402509	+	347	189023615	-	BAbS19_I03700	-	hypothetical protein
348	 61.78	+1	402596..403843	+	415	189023616	-	BAbS19_I03710	-	Tetracycline resistance protein
349	 55.93	0	404065..405312	+	415	189023617	-	BAbS19_I03720	-	bacteroid development protein BacA
350	 59.59	0	405351..406424	-	357	189023618	-	BAbS19_I03730	-	Polysaccharide deacetylase
351	 62.50	+1	406595..407266	+	223	189023619	-	BAbS19_I03740	-	hypothetical protein
352	 61.57	+1	407288..408739	+	483	189023620	-	BAbS19_I03750	-	GTP-binding protein EngA
353	 57.02	0	408898..410214	+	438	189023621	-	BAbS19_I03760	-	Heat shock protein Hsp70
354	 52.38	-1	410303..410428	-	41	189023622	-	BAbS19_I03770	-	hypothetical protein
355	 60.39	0	410650..411939	+	429	189023623	-	BAbS19_I03780	-	ATP/GTP-binding site motif A (P-loop)
356	 56.14	0	412210..412608	+	132	189023624	-	BAbS19_I03790	-	ATP synthase I
357	 55.87	0	412716..413465	+	249	189023625	-	BAbS19_I03800	-	ATP synthase subunit A
358	 62.28	+1	413533..413760	+	75	189023626	-	BAbS19_I03810	-	ATP synthase subunit C
359	 63.00	+1	413932..414558	+	208	189023627	-	BAbS19_I03820	-	H+-transporting two-sector ATPase, B/B' subunit
360	 56.25	0	414569..415048	+	159	189023628	-	BAbS19_I03830	-	H+-transporting two-sector ATPase, B/B' subunit
361	 63.76	+1	415171..415755	-	194	189023629	-	BAbS19_I03840	-	Ribonuclease HII/HIII
362	 61.13	0	416010..417182	-	390	189023630	-	BAbS19_I03850	-	Protein of unknown function DUF85
363	 62.33	+1	417318..417824	+	168	189023631	-	BAbS19_I03860	-	hypothetical protein
364	 58.23	0	417904..418140	-	78	189023632	-	BAbS19_I03870	-	hypothetical protein
365	 56.14	0	418320..418547	-	75	189023633	-	BAbS19_I03880	-	hypothetical protein
366	 60.22	0	418954..419853	-	299	189023634	-	BAbS19_I03890	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
367	 60.75	0	419883..420068	-	61	189023635	-	BAbS19_I03900	-	hypothetical protein
368	 59.48	0	420535..422745	-	736	189023636	-	BAbS19_I03910	-	Clp protease
369	 65.26	+2	423035..423817	-	260	189023637	-	BAbS19_I03920	-	Methyltransferase
370	 53.07	-1	423814..424041	-	75	189023638	-	BAbS19_I03930	-	hypothetical protein
371	 61.95	+1	424310..425326	+	338	189023639	-	BAbS19_I03940	-	Polyprenyl synthetase
372	 59.11	0	425630..427495	+	621	189023640	-	BAbS19_I03950	-	TPR repeat-containing protein
373	 57.10	0	427623..428573	+	316	189023641	-	BAbS19_I03960	-	Glycyl-tRNA synthetase alpha subunit
374	 54.39	0	428579..428692	+	37	189023642	-	BAbS19_I03970	-	Glycyl-tRNA synthetase, beta subunit
375	 59.85	0	428692..431025	+	777	189023643	-	BAbS19_I03980	-	Glycyl-tRNA synthetase, beta subunit
376	 64.92	+2	431164..432135	+	323	189023644	-	BAbS19_I03990	-	Sua5/YciO/YrdC/YwlC protein family
377	 59.02	0	432161..433573	+	470	189023645	-	BAbS19_I04000	-	oxidoreductase, FAD-binding
378	 52.52	-1	433611..433928	-	105	189023646	-	BAbS19_I04010	-	Plasmid stabilization system
379	 54.79	0	433925..434185	-	86	189023647	-	BAbS19_I04020	-	hypothetical protein
380	 62.08	+1	434433..434999	+	188	189023648	-	BAbS19_I04030	-	hypothetical protein
381	 60.69	0	435142..435894	-	250	189023649	-	BAbS19_I04040	-	Enoyl-CoA hydratase/isomerase
382	 61.16	0	435897..437675	-	592	189023650	-	BAbS19_I04050	-	Acyl-CoA dehydrogenase
383	 57.85	0	437993..439138	+	381	189023651	-	BAbS19_I04060	-	GGDEF domain protein
384	 61.14	0	439151..440434	-	427	189023652	-	BAbS19_I04070	-	Phosphoribosylglycinamide synthetase
385	 61.48	+1	440579..441580	+	333	189023653	-	BAbS19_I04080	-	UbiA prenyltransferase
386	 60.13	0	441620..442231	-	203	189023654	-	BAbS19_I04090	-	Pyridoxamine 5'-phosphate oxidase
387	 56.26	0	442505..442975	+	156	189023655	-	BAbS19_I04100	-	hypothetical protein
388	 60.19	0	443120..444061	+	313	189023656	-	BAbS19_I04110	-	Heat shock protein DnaJ
389	 48.15	-2	444065..444172	-	35	189023657	-	BAbS19_I04120	-	hypothetical protein
390	 56.90	0	444205..445023	+	272	189023658	-	BAbS19_I04130	-	Short-chain dehydrogenase/reductase SDR
391	 58.71	0	445138..445728	+	196	189023659	-	BAbS19_I04140	-	Phosphoglycerate/bisphosphoglycerate mutase
392	 53.33	-1	445990..446199	+	69	189023660	-	BAbS19_I04150	-	ATP/GTP-binding site motif A (P-loop)
393	 55.87	0	446671..446883	+	70	189023661	-	BAbS19_I04160	-	hypothetical protein
394	 60.06	0	446960..447640	+	226	189023662	-	BAbS19_I04170	-	putative lipoprotein
395	 50.00	-2	447785..448036	-	83	189023663	-	BAbS19_I04180	-	hypothetical protein
396	 60.82	0	448311..449405	+	364	189023664	-	BAbS19_I04190	-	Chorismate synthase
397	 60.22	0	449541..450656	+	371	189023665	-	BAbS19_I04200	-	3,4-Dihydroxy-2-butanone 4-phosphate synthase
398	 58.25	0	450872..451822	+	316	189023666	-	BAbS19_I04210	-	Histone deacetylase family
399	 56.86	0	451827..452081	+	84	189023667	-	BAbS19_I04220	-	Exonuclease VII, small subunit
400	 57.61	0	452088..452606	-	172	189023668	-	BAbS19_I04230	-	DedA family
401	 52.87	-1	452848..453108	-	86	189023669	-	BAbS19_I04240	-	Transglycosylase-associated protein
402	 63.78	+1	453268..453822	+	184	189023670	-	BAbS19_I04250	-	Ribosomal protein P2
403	 60.94	0	454026..454898	+	290	189023671	-	BAbS19_I04260	-	Protein of unknown function DUF209
404	 62.01	+1	455041..456972	+	643	189023672	-	BAbS19_I04270	-	1-deoxy-D-xylulose-5-phosphate synthase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.