IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
235	 46.98	-2	277977..278804	-	275	189023503	-	BAbS19_I02540	-	hypothetical protein
236	 60.19	0	279784..279999	-	71	189023504	-	BAbS19_I02550	-	zinc-binding protein
237	 60.98	0	280009..280641	-	210	189023505	-	BAbS19_I02560	-	Maf-like protein
238	 52.05	-1	280669..280887	-	72	189023506	-	BAbS19_I02570	-	Translation initiation factor, IF1 type
239	 58.65	0	280999..281472	-	157	189023507	-	BAbS19_I02580	-	Low molecular weight phosphotyrosine protein phosphatase
240	 58.80	0	281479..281961	-	160	189023508	-	BAbS19_I02590	-	hypothetical protein
241	 61.79	+1	281968..283260	-	430	189023509	-	BAbS19_I02600	-	Histidinol dehydrogenase
242	 55.10	0	283335..283775	-	146	189023510	-	BAbS19_I02610	-	hypothetical protein
243	 60.93	0	284046..285335	-	429	189023511	-	BAbS19_I02620	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
244	 52.42	-1	285438..285851	+	137	189023512	-	BAbS19_I02630	-	Bacterial inner-membrane translocator
245	 55.63	0	286040..287806	+	588	189023513	-	BAbS19_I02640	-	site-specific recombinase, phage integrase family
246	 55.56	0	288163..288324	+	53	189023514	-	BAbS19_I02650	-	BRO family protein
247	 58.25	0	289123..289740	+	205	189023515	-	BAbS19_I02660	-	Site-specific recombinase
248	 54.66	0	290406..291338	+	310	189023516	-	BAbS19_I02670	-	hypothetical protein
249	 52.56	-1	293384..293773	+	129	189023517	-	BAbS19_I02680	-	hypothetical protein
250	 61.68	+1	294366..295208	+	280	189023518	-	BAbS19_I02690	-	Urease accessory protein UreD
251	 60.40	0	295361..295663	+	100	189023519	-	BAbS19_I02700	-	Urease, gamma subunit
252	 57.84	0	295830..296135	+	101	189023520	-	BAbS19_I02710	-	Urease, beta subunit
253	 60.36	0	296154..297866	+	570	189023521	-	BAbS19_I02720	-	Urease:Amidohydrolase
254	 59.50	0	297882..298397	+	171	189023522	-	BAbS19_I02730	-	UreE urease accessory, N-terminal
255	 63.17	+1	298369..299055	+	228	189023523	-	BAbS19_I02740	-	urease accessory protein UreF
256	 57.26	0	299052..299678	+	208	189023524	-	BAbS19_I02750	-	Urease accessory protein UREG
257	 58.61	0	300034..301659	-	541	189023525	-	BAbS19_I02760	-	sensor histidine kinase
258	 60.68	0	301944..303095	+	383	189023526	-	BAbS19_I02770	-	transporter, putative
259	 60.28	0	303110..306241	+	1043	189023527	-	BAbS19_I02780	-	Acriflavin resistance protein
260	 59.78	0	307885..309132	-	415	189023528	-	BAbS19_I02810	-	Peptidase M20/M25/M40
261	 55.12	0	309351..310034	+	227	189023529	-	BAbS19_I02820	-	Bacterial regulatory protein TetR, HTH motif
262	 60.95	0	310464..311774	-	436	189023530	-	BAbS19_I02830	-	dihydropyrimidine dehydrogenase
263	 61.20	0	311793..313274	-	493	189023531	-	BAbS19_I02840	-	pyridine nucleotide-disulphide oxidoreductase family protein
264	 56.29	0	313462..313914	-	150	189023532	-	BAbS19_I02850	-	hypothetical protein
265	 60.55	0	314065..315714	+	549	189023533	-	BAbS19_I02860	-	Phosphoglucose isomerase (PGI)
266	 58.76	0	315848..316909	+	353	189023534	-	BAbS19_I02870	-	arginine/ornithine transport operon protein aot
267	 60.00	0	316906..317655	+	249	189023535	-	BAbS19_I02880	-	hydrolase, haloacid dehalogenase-like family
268	 58.88	0	317628..318500	-	290	189023536	-	BAbS19_I02890	-	Esterase/lipase/thioesterase
269	 59.34	0	318526..320271	-	581	189023537	-	BAbS19_I02900	-	acyl-CoA synthase
270	 56.19	0	320622..321251	-	209	189023538	-	BAbS19_I02910	-	Bacterial regulatory protein TetR, HTH motif
271	 59.88	0	321424..322617	+	397	189023539	-	BAbS19_I02920	-	Secretion protein HlyD
272	 60.20	0	322614..325769	+	1051	189023540	-	BAbS19_I02930	-	Acriflavin resistance protein
273	 52.98	-1	325880..326047	-	55	189023541	-	BAbS19_I02940	-	hypothetical protein
274	 58.24	0	326477..327319	-	280	189023542	-	BAbS19_I02950	-	Bacterial extracellular solute-binding protein, family 3
275	 58.21	0	327588..329480	+	630	189023543	-	BAbS19_I02960	-	Glycosyl transferase, family 2
276	 56.77	0	329408..330367	-	319	189023544	-	BAbS19_I02970	-	Domain of unknown function DUF344
277	 60.90	0	330500..331816	+	438	189023545	-	BAbS19_I02980	-	sensor histidine kinase, hypothetical
278	 61.33	+1	331946..332488	-	180	189023546	-	BAbS19_I02990	-	Pollen allergen Poa pIX/Phl pVI, C-terminal
279	 55.43	0	332660..332926	-	88	189023547	-	BAbS19_I03000	-	hypothetical protein
280	 59.74	0	333092..334303	+	403	189023548	-	BAbS19_I03010	-	Aminotransferase class-III
281	 57.61	0	334308..335246	+	312	189023549	-	BAbS19_I03020	-	ornithine carbamoyltransferase
282	 58.26	0	335248..336270	+	340	189023550	-	BAbS19_I03030	-	Hsp33 protein
283	 56.74	0	336311..336703	-	130	189023551	-	BAbS19_I03040	-	Protein of unknown function DUF525
284	 59.48	0	337072..338268	-	398	189023552	-	BAbS19_I03050	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
285	 61.08	0	338695..339786	+	363	189023553	-	BAbS19_I03060	-	dCTP deaminase
286	 59.88	0	339877..340893	+	338	189023554	-	BAbS19_I03070	-	Helix-turn-helix, AraC type
287	 53.18	-1	340980..341246	+	88	189023555	-	BAbS19_I03080	-	hypothetical protein
288	 59.83	0	341283..341765	+	160	189023556	-	BAbS19_I03090	-	Allergen V5/Tpx-1 related
289	 59.73	0	341910..343307	+	465	189023557	-	BAbS19_I03100	-	Multi antimicrobial extrusion protein MatE
290	 60.37	0	343309..344403	-	364	189023558	-	BAbS19_I03110	-	Dihydroorotate dehydrogenase
291	 58.19	0	344400..344753	-	117	189023559	-	BAbS19_I03120	-	hypothetical protein
292	 58.77	0	345007..345462	+	151	189023560	-	BAbS19_I03130	-	hypothetical protein
293	 58.99	0	345553..346503	-	316	189023561	-	BAbS19_I03140	-	proline iminopeptidase
294	 58.57	0	346733..347374	+	213	189023562	-	BAbS19_I03150	-	Bacterial regulatory protein, LuxR family
295	 60.72	0	347411..350926	-	1171	189023563	-	BAbS19_I03160	-	sensor histidine kinase/response regulator
296	 53.70	-1	351220..351327	-	35	189023564	-	BAbS19_I03170	-	hypothetical protein
297	 52.52	-1	351448..351864	+	138	189023565	-	BAbS19_I03180	-	Large-conductance mechanosensitive channel
298	 58.53	0	351940..353217	-	425	189023566	-	BAbS19_I03190	-	Aminotransferase, class-II
299	 57.41	0	353363..354064	-	233	189023567	-	BAbS19_I03200	-	Polysaccharide deacetylase
300	 56.53	0	354073..354792	-	239	189023568	-	BAbS19_I03210	-	Glycosyl transferase, family 25
301	 52.10	-1	354922..355539	-	205	189023569	-	BAbS19_I03220	-	hypothetical protein
302	 48.92	-2	355688..355873	-	61	189023570	-	BAbS19_I03230	-	hypothetical protein
303	 59.37	0	355964..356854	-	296	189023571	-	BAbS19_I03240	-	Bacterial regulatory protein LysR
304	 61.90	+1	356976..357395	+	139	189023572	-	BAbS19_I03250	-	LrgA family
305	 62.71	+1	357382..358089	+	235	189023573	-	BAbS19_I03260	-	LrgB-like protein
306	 58.94	0	358635..359876	+	413	189023574	-	BAbS19_I03270	-	Esterase/lipase/thioesterase, active site
307	 61.00	0	359963..360844	+	293	189023575	-	BAbS19_I03280	-	Pantoate-beta-alanine ligase
308	 62.44	+1	360846..361673	+	275	189023576	-	BAbS19_I03290	-	Ketopantoate hydroxymethyltransferase
309	 54.83	0	361858..362634	-	258	189023577	-	BAbS19_I03300	-	Ferredoxin-NADP reductase
310	 53.76	-1	362812..362997	-	61	189023578	-	BAbS19_I03310	-	Manganese and iron superoxide dismutase
311	 51.02	-1	363163..363309	-	48	189023579	-	BAbS19_I03320	-	hypothetical protein
312	 52.73	-1	363426..364523	+	365	189023580	-	BAbS19_I03330	-	Orn/DAP/Arg decarboxylase, family 2
313	 55.23	0	364704..365945	+	413	189023581	-	BAbS19_I03340	-	ATP/GTP-binding site motif A (P-loop)
314	 61.32	+1	366201..367229	-	342	189023582	-	BAbS19_I03350	-	ATP/GTP-binding site motif A (P-loop)
315	 43.52	-2	367284..367391	-	35	189023583	-	BAbS19_I03360	-	hypothetical protein
316	 59.39	0	369143..369664	-	173	189023584	-	BAbS19_I03390	-	invasion protein B
317	 58.48	0	369912..371279	+	455	189023585	-	BAbS19_I03400	-	Gliadin, alpha/beta
318	 55.92	0	371276..371917	+	213	189023586	-	BAbS19_I03410	-	Bacterial regulatory protein, LuxR family
319	 54.24	0	372205..372687	+	160	189023587	-	BAbS19_I03420	-	hypothetical protein
320	 59.46	0	372699..374267	+	522	189023588	-	BAbS19_I03430	-	TRAP dicarboxylate transporter, DctM subunit, hypothetical
321	 58.51	0	374329..375456	+	375	189023589	-	BAbS19_I03440	-	TRAP dicarboxylate transporter-DctP subunit
322	 59.83	0	375539..376357	-	272	189023590	-	BAbS19_I03450	-	hypothetical protein
323	 61.13	0	376370..377797	-	475	189023591	-	BAbS19_I03460	-	Polysaccharide deacetylase
324	 56.52	0	378064..378339	+	91	189023592	-	BAbS19_I03470	-	hypothetical protein
325	 61.05	0	378345..379823	+	492	189023593	-	BAbS19_I03480	-	xanthine dehydrogenase, hypothetical
326	 59.73	0	379836..381953	+	705	189023594	-	BAbS19_I03490	-	Xanthine dehydrogenase
327	 64.20	+1	381978..382139	+	53	189023595	-	BAbS19_I03500	-	Xanthine dehydrogenase
328	 58.99	0	382144..383016	+	290	189023596	-	BAbS19_I03510	-	XdhC protein
329	 58.36	0	383097..384011	-	304	189023597	-	BAbS19_I03520	-	Transcriptional regulator, LysR family
330	 58.43	0	384192..385442	+	416	189023598	-	BAbS19_I03530	-	Cytochrome c heme-binding site
331	 58.70	0	385439..386743	+	434	189023599	-	BAbS19_I03540	-	Amidohydrolase
332	 62.08	+1	386823..388109	+	428	189023600	-	BAbS19_I03550	-	putative hydroxypyruvate reductase
333	 53.46	-1	388090..388248	-	52	189023601	-	BAbS19_I03560	-	Cytochrome oxidase maturation protein cbb3-type
334	 60.82	0	388245..390503	-	752	189023602	-	BAbS19_I03570	-	nitrogen fixation protein FixI, hypothetical
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.