IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 58.49	0	177437..177901	+	154	189023412	-	BAbS19_I01520	-	nitrogen regulatory IIA protein
145	 58.54	0	177982..178227	-	81	189023413	-	BAbS19_I01530	-	hypothetical protein
146	 56.26	0	178333..178755	-	140	189023414	-	BAbS19_I01540	-	Heat shock protein Hsp20
147	 50.70	-1	178846..179058	-	70	189023415	-	BAbS19_I01550	-	hypothetical protein
148	 58.63	0	179027..179524	-	165	189023416	-	BAbS19_I01560	-	hypothetical protein
149	 60.51	0	179629..180375	+	248	189023417	-	BAbS19_I01570	-	Nth, endonuclease III
150	 58.40	0	180416..181129	-	237	189023418	-	BAbS19_I01580	-	Sodium:dicarboxylate symporter, DUF540
151	 59.92	0	181389..182381	+	330	189023419	-	BAbS19_I01590	-	Carbohydrate kinase, PfkB
152	 59.82	0	182400..183056	-	218	189023420	-	BAbS19_I01600	-	hypothetical protein
153	 59.18	0	183189..183869	-	226	189023421	-	BAbS19_I01610	-	GrpE protein
154	 59.76	0	183975..185045	-	356	189023422	-	BAbS19_I01620	-	Negative regulator of class I heat shock protein
155	 62.76	+1	185267..185983	+	238	189023423	-	BAbS19_I01630	-	Ribonuclease PH
156	 58.62	0	186157..186330	+	57	189023424	-	BAbS19_I01640	-	Lactoylglutathione lyase, putative
157	 57.21	0	186339..186560	+	73	189023425	-	BAbS19_I01650	-	Lactoylglutathione lyase, putative
158	 59.58	0	186563..187225	+	220	189023426	-	BAbS19_I01660	-	Ham1-like protein
159	 60.41	0	187222..188436	+	404	189023427	-	BAbS19_I01670	-	coproporphyrinogen III oxidase
160	 62.28	+1	188448..189359	+	303	189023428	-	BAbS19_I01680	-	tetrapyrrole methylase family protein
161	 61.42	+1	189356..189736	+	126	189023429	-	BAbS19_I01690	-	hypothetical protein
162	 64.15	+1	189962..191389	+	475	189023430	-	BAbS19_I01700	-	CysG, siroheme synthase
163	 62.71	+1	191407..191709	+	100	189023431	-	BAbS19_I01710	-	hypothetical protein
164	 57.51	0	191730..193400	+	556	189023432	-	BAbS19_I01720	-	sulfite reductase (NADPH) hemoprotein beta-component
165	 63.37	+1	193390..194148	+	252	189023433	-	BAbS19_I01730	-	Phosphoadenosine phosphosulfate reductase CysH-type
166	 59.24	0	194201..194725	+	174	189023434	-	BAbS19_I01740	-	hypothetical protein
167	 53.40	-1	194793..195086	+	97	189023435	-	BAbS19_I01750	-	hypothetical protein
168	 59.41	0	195087..195665	-	192	189023436	-	BAbS19_I01760	-	Methylated-DNA-[protein]-cysteine S-methyltransferase
169	 56.91	0	195923..196168	+	81	189023437	-	BAbS19_I01770	-	hypothetical protein
170	 57.85	0	196221..196787	-	188	189023438	-	BAbS19_I01780	-	hypothetical protein
171	 59.24	0	196924..200709	+	1261	189023439	-	BAbS19_I01790	-	MetH, 5-methyltetrahydrofolate--homocysteine methyltransferase
172	 51.32	-1	201021..201737	+	238	189023440	-	BAbS19_I01800	-	Transcriptional activator, LUXR family
173	 59.52	0	201852..203222	+	456	189023441	-	BAbS19_I01810	-	Aminotransferase class-III
174	 55.70	0	203607..204527	+	306	189023442	-	BAbS19_I01820	-	sulfate adenylyltransferase subunit 2
175	 58.14	0	204527..206461	+	644	189023443	-	BAbS19_I01830	-	binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
176	 61.35	+1	206464..207309	+	281	189023444	-	BAbS19_I01840	-	CYSQ protein
177	 55.76	0	207571..208377	-	268	189023445	-	BAbS19_I01850	-	transcriptional regulator, Crp/Fnr family
178	 57.32	0	208575..209312	+	245	189023446	-	BAbS19_I01860	-	Bacterial regulatory protein, LuxR family
179	 58.33	0	209640..210431	+	263	189023447	-	BAbS19_I01870	-	Bacterial regulatory protein, DeoR family
180	 60.38	0	210513..212024	+	503	189023448	-	BAbS19_I01880	-	FAD-dependent glycerol-3-phosphate dehydrogenase
181	 64.81	+1	212243..213211	+	322	189023449	-	BAbS19_I01890	-	Helix-turn-helix, Fis-type
182	 59.03	0	215357..216391	+	344	189023450	-	BAbS19_I01920	-	Zinc-containing alcohol dehydrogenase
183	 59.82	0	216413..216850	+	145	189023451	-	BAbS19_I01930	-	hypothetical protein
184	 59.82	0	216876..217898	+	340	189023452	-	BAbS19_I01940	-	transcriptional regulator LacI family
185	 59.21	0	220410..221843	+	477	189023453	-	BAbS19_I01980	-	Aldehyde dehydrogenase
186	 63.19	+1	221888..222664	-	258	189023454	-	BAbS19_I01990	-	ABC transporter, permease protein
187	 58.94	0	222661..223359	-	232	189023455	-	BAbS19_I02000	-	TENA/THI-4 protein
188	 57.38	0	223356..224324	-	322	189023456	-	BAbS19_I02010	-	ABC transporter, periplasmic substrate-binding protein
189	 60.95	0	224348..224959	-	203	189023457	-	BAbS19_I02020	-	Thiamine monophosphate synthase
190	 62.65	+1	224956..225726	-	256	189023458	-	BAbS19_I02030	-	FMN/related compound-binding core
191	 59.09	0	225728..225925	-	65	189023459	-	BAbS19_I02040	-	thiamineS protein
192	 63.38	+1	225922..226926	-	334	189023460	-	BAbS19_I02050	-	D-amino acid oxidase family protein
193	 62.67	+1	226926..227801	-	291	189023461	-	BAbS19_I02060	-	Phosphomethylpyrimidine kinase
194	 57.72	0	228230..230341	+	703	189023462	-	BAbS19_I02070	-	PAS-associated C-terminal domain protein
195	 62.11	+1	230440..232719	+	759	189023463	-	BAbS19_I02080	-	copper-translocating P-type ATPase
196	 58.67	0	232699..233148	-	149	189023464	-	BAbS19_I02090	-	Bacterial regulatory protein, MerR family
197	 61.31	+1	233254..234000	-	248	189023465	-	BAbS19_I02100	-	ABC transporter, permease protein
198	 63.58	+1	233997..234935	-	312	189023466	-	BAbS19_I02110	-	ATP/GTP-binding site motif A (P-loop)
199	 62.29	+1	234932..236143	-	403	189023467	-	BAbS19_I02120	-	Binding-protein-dependent transport systems inner membrane component
200	 56.45	0	236165..237094	-	309	189023468	-	BAbS19_I02130	-	Substrate-binding region of ABC-type glycine betaine transport system
201	 45.62	-2	237265..237915	-	216	189023469	-	BAbS19_I02140	-	hypothetical protein
202	 60.82	0	238219..239484	-	421	189023470	-	BAbS19_I02150	-	glutamate dehydrogenase, hypothetical
203	 59.65	0	239811..241064	+	417	189023471	-	BAbS19_I02160	-	Pyridine nucleotide-disulphide oxidoreductase
204	 58.82	0	241083..241388	+	101	189023472	-	BAbS19_I02170	-	Sarcosine oxidase, delta subunit, heterotetrameric
205	 57.48	0	244396..244950	+	184	189023473	-	BAbS19_I02200	-	Sarcosine oxidase, gamma subunit
206	 59.72	0	245003..245851	-	282	189023474	-	BAbS19_I02210	-	Amidohydrolase 2
207	 60.90	0	245923..246702	-	259	189023475	-	BAbS19_I02220	-	Bacterial regulatory protein, MarR family
208	 57.73	0	246860..248179	+	439	189023476	-	BAbS19_I02230	-	Bacterial extracellular solute-binding protein, family 1
209	 58.95	0	248270..249163	+	297	189023477	-	BAbS19_I02240	-	Binding-protein-dependent transport systems inner membrane component
210	 59.82	0	249166..250041	+	291	189023478	-	BAbS19_I02250	-	Binding-protein-dependent transport systems inner membrane component
211	 60.26	0	250049..251140	+	363	189023479	-	BAbS19_I02260	-	ATP/GTP-binding site motif A (P-loop)
212	 59.79	0	251143..252261	+	372	189023480	-	BAbS19_I02270	-	Mandelate racemase/muconate lactonizing enzyme
213	 51.01	-1	252258..252602	+	114	189023481	-	BAbS19_I02280	-	hypothetical protein
214	 60.46	0	252595..253674	+	359	189023482	-	BAbS19_I02290	-	Oxidoreductase, N-terminal
215	 52.38	-1	253671..253775	+	34	189023483	-	BAbS19_I02300	-	hypothetical protein
216	 61.50	+1	253779..254513	+	244	189023484	-	BAbS19_I02310	-	Short-chain dehydrogenase/reductase SDR
217	 58.98	0	254554..255399	+	281	189023485	-	BAbS19_I02320	-	ATP/GTP-binding site motif A (P-loop)
218	 58.53	0	255413..256690	+	425	189023486	-	BAbS19_I02330	-	Mandelate racemase/muconate lactonizing enzyme
219	 55.47	0	258844..260040	+	398	189023487	-	BAbS19_I02340	-	Phage integrase
220	 55.71	0	260551..260769	+	72	189023488	-	BAbS19_I02350	-	hypothetical protein
221	 53.02	-1	260976..261290	+	104	189023489	-	BAbS19_I02360	-	hypothetical protein
222	 59.86	0	261287..262168	+	293	189023490	-	BAbS19_I02370	-	virulence-associated protein E
223	 53.88	-1	263842..264279	+	145	189023491	-	BAbS19_I02400	-	hypothetical protein
224	 53.79	-1	264433..265449	+	338	189023492	-	BAbS19_I02410	-	hypothetical protein
225	 51.41	-1	265584..265760	+	58	189023493	-	BAbS19_I02420	-	hypothetical protein
226	 55.96	0	265757..267877	+	706	189023494	-	BAbS19_I02430	-	Flagellar protein FlgJ
227	 52.94	-1	270109..270414	+	101	189023495	-	BAbS19_I02460	-	hypothetical protein
228	 55.56	0	271513..271719	+	68	189023496	-	BAbS19_I02470	-	hypothetical protein
229	 48.82	-2	272983..273531	+	182	189023497	-	BAbS19_I02480	-	zinc-dependent metallopeptidase
230	 53.66	-1	274938..275183	-	81	189023498	-	BAbS19_I02490	-	hypothetical protein
231	 54.39	0	275279..275506	+	75	189023499	-	BAbS19_I02500	-	hypothetical protein
232	 51.89	-1	275572..275862	+	96	189023500	-	BAbS19_I02510	-	hypothetical protein
233	 56.48	0	275859..276398	+	179	189023501	-	BAbS19_I02520	-	hypothetical protein
234	 52.55	-1	276669..277277	+	202	189023502	-	BAbS19_I02530	-	hypothetical protein
235	 46.98	-2	277977..278804	-	275	189023503	-	BAbS19_I02540	-	hypothetical protein
236	 60.19	0	279784..279999	-	71	189023504	-	BAbS19_I02550	-	zinc-binding protein
237	 60.98	0	280009..280641	-	210	189023505	-	BAbS19_I02560	-	Maf-like protein
238	 52.05	-1	280669..280887	-	72	189023506	-	BAbS19_I02570	-	Translation initiation factor, IF1 type
239	 58.65	0	280999..281472	-	157	189023507	-	BAbS19_I02580	-	Low molecular weight phosphotyrosine protein phosphatase
240	 58.80	0	281479..281961	-	160	189023508	-	BAbS19_I02590	-	hypothetical protein
241	 61.79	+1	281968..283260	-	430	189023509	-	BAbS19_I02600	-	Histidinol dehydrogenase
242	 55.10	0	283335..283775	-	146	189023510	-	BAbS19_I02610	-	hypothetical protein
243	 60.93	0	284046..285335	-	429	189023511	-	BAbS19_I02620	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.