IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1859	 57.21	0	2011551..2012153	+	200	189025127	-	BAbS19_I19390	-	Dephospho-CoA kinase
1860	 57.73	0	2012195..2012899	+	234	189025128	-	BAbS19_I19400	-	DNA polymerase III, epsilon subunit
1861	 56.91	0	2012957..2013448	-	163	189025129	-	BAbS19_I19410	-	Bacterial protein export chaperone SecB
1862	 59.64	0	2013568..2014065	-	165	189025130	-	BAbS19_I19420	-	FxsA cytoplasmic membrane protein
1863	 55.46	0	2014282..2014977	+	231	189025131	-	BAbS19_I19430	-	Calcium-binding EF-hand
1864	 60.20	0	2015053..2016150	+	365	189025132	-	BAbS19_I19440	-	MltA family
1865	 63.18	+1	2016156..2016758	+	200	189025133	-	BAbS19_I19450	-	Smr protein/MutS2 C-terminal
1866	 58.01	0	2016755..2017135	+	126	189025134	-	BAbS19_I19460	-	Helix-turn-helix motif
1867	 56.47	0	2017144..2018163	-	339	189025135	-	BAbS19_I19470	-	hypothetical protein
1868	 59.77	0	2018310..2019614	-	434	189025136	-	BAbS19_I19480	-	CbxX/CfqX superfamily
1869	 59.46	0	2019688..2020242	-	184	189025137	-	BAbS19_I19490	-	Pyridine nucleotide-disulphide oxidoreductase, class-II
1870	 59.77	0	2020539..2021147	+	202	189025138	-	BAbS19_I19500	-	Imidazoleglycerol-phosphate dehydratase
1871	 59.61	0	2021257..2021766	+	169	189025139	-	BAbS19_I19510	-	hypothetical protein
1872	 58.06	0	2021769..2022419	+	216	189025140	-	BAbS19_I19520	-	Glutamine amidotransferase class-I
1873	 59.70	0	2022424..2023155	+	243	189025141	-	BAbS19_I19530	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1874	 60.31	0	2023152..2023937	+	261	189025142	-	BAbS19_I19540	-	imidazole glycerol phosphate synthase subunit HisF
1875	 62.04	+1	2024073..2024396	+	107	189025143	-	BAbS19_I19550	-	Phosphoribosyl pyrophosphohydrolase/cyclohydrolase
1876	 57.48	0	2024411..2025379	+	322	189025144	-	BAbS19_I19560	-	pantothenate kinase
1877	 59.36	0	2025442..2025879	-	145	189025145	-	BAbS19_I19570	-	Class I peptide chain release factor domain protein
1878	 59.69	0	2026125..2027600	-	491	189025146	-	BAbS19_I19580	-	phosphoenolpyruvate carboxykinase
1879	 58.33	0	2028003..2028722	+	239	189025147	-	BAbS19_I19590	-	Transcriptional regulatory protein
1880	 59.58	0	2028833..2030638	+	601	189025148	-	BAbS19_I19600	-	BvrS, sensor histidine kinase
1881	 60.21	0	2030664..2031143	+	159	189025149	-	BAbS19_I19610	-	ATP/GTP-binding site motif A (P-loop)
1882	 55.22	0	2031395..2031796	+	133	189025150	-	BAbS19_I19620	-	PTS system fructose subfamily IIA component
1883	 59.68	0	2031800..2032114	+	104	189025151	-	BAbS19_I19630	-	PtsH, phosphocarrier protein HPr
1884	 58.24	0	2032422..2033822	+	466	189025152	-	BAbS19_I19640	-	S-adenosyl-L-homocysteine hydrolase
1885	 60.54	0	2034207..2036786	+	859	189025153	-	BAbS19_I19650	-	sensory box histidine kinase, hypothetical
1886	 59.27	0	2036795..2038336	+	513	189025154	-	BAbS19_I19660	-	ATP/GTP-binding protein
1887	 59.31	0	2038323..2039042	+	239	189025155	-	BAbS19_I19670	-	Nucleotidyl transferase
1888	 62.93	+1	2039057..2042215	+	1052	189025156	-	BAbS19_I19680	-	hypothetical protein
1889	 61.42	+1	2042212..2045754	+	1180	189025157	-	BAbS19_I19690	-	UvrD/REP helicase
1890	 58.33	0	2045936..2046259	+	107	189025158	-	BAbS19_I19700	-	Thioredoxin
1891	 59.89	0	2046313..2047641	-	442	189025159	-	BAbS19_I19710	-	Folylpolyglutamate synthetase
1892	 57.28	0	2047644..2048549	-	301	189025160	-	BAbS19_I19720	-	Acetyl-CoA carboxylase carboxyl transferase, beta subunit
1893	 58.81	0	2048610..2049449	-	279	189025161	-	BAbS19_I19730	-	Tryptophan synthase, alpha chain
1894	 62.61	+1	2049446..2049913	-	155	189025162	-	BAbS19_I19740	-	hypothetical protein
1895	 60.20	0	2049916..2051136	-	406	189025163	-	BAbS19_I19750	-	tryptophan synthase subunit beta
1896	 58.59	0	2051156..2051824	-	222	189025164	-	BAbS19_I19760	-	N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
1897	 57.70	0	2051863..2052498	-	211	189025165	-	BAbS19_I19770	-	hypothetical protein
1898	 57.06	0	2052495..2052671	-	58	189025166	-	BAbS19_I19780	-	Protein of unknown function DUF45
1899	 60.67	0	2053365..2053664	-	99	189025167	-	BAbS19_I19790	-	Hypothetical Cytosolic Protein
1900	 55.56	0	2053695..2053811	-	38	189025168	-	BAbS19_I19800	-	hypothetical protein
1901	 63.45	+1	2054181..2055143	-	320	189025169	-	BAbS19_I19810	-	benzoate transport protein, putative
1902	 60.23	0	2055157..2055948	-	263	189025170	-	BAbS19_I19820	-	Esterase/lipase/thioesterase
1903	 56.22	0	2056584..2056784	+	66	189025171	-	BAbS19_I19830	-	Initiation factor 3
1904	 54.63	0	2056913..2057527	+	204	189025172	-	BAbS19_I19840	-	nickel-cobalt-cadmium resistance protein
1905	 57.71	0	2057794..2057994	+	66	189025173	-	BAbS19_I19850	-	Ribosomal protein L35
1906	 57.78	0	2058022..2058426	+	134	189025174	-	BAbS19_I19860	-	Ribosomal protein L20
1907	 58.13	0	2058525..2059367	+	280	189025175	-	BAbS19_I19870	-	hypothetical protein
1908	 59.19	0	2059455..2060564	+	369	189025176	-	BAbS19_I19880	-	phenylalanyl-tRNA synthetase alpha subunit
1909	 60.37	0	2060586..2063000	+	804	189025177	-	BAbS19_I19890	-	phenylalanyl-tRNA synthetase beta subunit
1910	 57.85	0	2063070..2064056	+	328	189025178	-	BAbS19_I19900	-	Oxidoreductase
1911	 58.41	0	2064282..2066195	+	637	189025179	-	BAbS19_I19910	-	Heat shock protein Hsp70
1912	 59.61	0	2066440..2067573	+	377	189025180	-	BAbS19_I19920	-	DnaJ, chaperone protein DnaJ
1913	 56.17	0	2067694..2068293	+	199	189025181	-	BAbS19_I19930	-	SAM (and some other nucleotide) binding motif
1914	 60.11	0	2068503..2069219	+	238	189025182	-	BAbS19_I19940	-	Orotidine 5'-phosphate decarboxylase
1915	 58.68	0	2069268..2069555	+	95	189025183	-	BAbS19_I19950	-	hypothetical protein
1916	 58.73	0	2069593..2070651	-	352	189025184	-	BAbS19_I19960	-	Senescence marker protein-30 (SMP-30)
1917	 58.68	0	2070716..2071654	+	312	189025185	-	BAbS19_I19970	-	glutathione synthetase
1918	 61.75	+1	2071709..2073295	+	528	189025186	-	BAbS19_I19980	-	Mg chelatase-related protein
1919	 57.58	0	2073344..2073970	-	208	189025187	-	BAbS19_I19990	-	Band 4.1 domain protein
1920	 61.06	0	2074412..2074768	-	118	189025188	-	BAbS19_I20000	-	Rare lipoprotein A
1921	 60.19	0	2075312..2075728	+	138	189025189	-	BAbS19_I20010	-	Hypothetical Membrane Spanning Protein
1922	 56.73	0	2075883..2076929	+	348	189025190	-	BAbS19_I20020	-	phosphate ABC transporter, phosphate-binding protein
1923	 60.30	0	2077071..2078561	+	496	189025191	-	BAbS19_I20030	-	PstC, phosphate ABC transporter, permease protein
1924	 59.88	0	2078561..2079871	+	436	189025192	-	BAbS19_I20040	-	Binding-protein-dependent transport systems inner membrane component
1925	 60.08	0	2079936..2080709	+	257	189025193	-	BAbS19_I20050	-	ATP/GTP-binding site motif A (P-loop)
1926	 57.54	0	2080775..2081497	+	240	189025194	-	BAbS19_I20060	-	PhoU
1927	 61.86	+1	2081615..2082301	+	228	189025195	-	BAbS19_I20070	-	Transcriptional regulatory protein
1928	 62.08	+1	2082887..2083867	+	326	189025196	-	BAbS19_I20080	-	lipoprotein, putative
1929	 55.80	0	2083978..2084253	-	91	189025197	-	BAbS19_I20090	-	lipoprotein, putative
1930	 60.77	0	2084378..2085631	+	417	189025198	-	BAbS19_I20100	-	Thermophilic metalloprotease (M29)
1931	 55.62	0	2085792..2086289	-	165	189025199	-	BAbS19_I20110	-	Ferritin:DNA-binding protein Dps
1932	 60.29	0	2086572..2087261	+	229	189025200	-	BAbS19_I20120	-	Glycoprotease (M22) metalloprotease
1933	 61.28	+1	2087266..2087766	+	166	189025201	-	BAbS19_I20130	-	GCN5-related N-acetyltransferase
1934	 60.07	0	2087763..2088566	+	267	189025202	-	BAbS19_I20140	-	Phospholipid/glycerol acyltransferase
1935	 61.11	0	2088624..2090027	+	467	189025203	-	BAbS19_I20150	-	hypothetical protein
1936	 60.45	0	2090186..2091247	+	353	189025204	-	BAbS19_I20160	-	PhoH-like protein
1937	 54.62	0	2091316..2091888	+	190	189025205	-	BAbS19_I20170	-	Diacyglycerol kinase
1938	 59.87	0	2091891..2093009	+	372	189025206	-	BAbS19_I20180	-	CBS domain containing protein
1939	 60.29	0	2093006..2094604	+	532	189025207	-	BAbS19_I20190	-	apolipoprotein N-acyltransferase
1940	 53.14	-1	2094751..2095164	+	137	189025208	-	BAbS19_I20200	-	Helix-turn-helix motif
1941	 60.51	0	2095391..2096656	+	421	189025209	-	BAbS19_I20210	-	S-adenosylmethionine synthetase
1942	 61.54	+1	2096665..2097366	+	233	189025210	-	BAbS19_I20220	-	Putative methyltransferase
1943	 58.79	0	2097534..2098193	+	219	189025211	-	BAbS19_I20230	-	Domain of unknown function DUF150
1944	 59.23	0	2098246..2099859	+	537	189025212	-	BAbS19_I20240	-	Ribosomal protein S1
1945	 60.70	0	2100242..2100844	+	200	189025213	-	BAbS19_I20250	-	Protein of unknown function DUF448
1946	 62.85	+1	2100982..2103861	+	959	189025214	-	BAbS19_I20260	-	translation initiation factor IF-2
1947	 58.94	0	2104127..2104579	+	150	189025215	-	BAbS19_I20270	-	Ribosome-binding factor A
1948	 60.51	0	2104583..2105557	+	324	189025216	-	BAbS19_I20280	-	Pseudouridylate synthase TruB
1949	 56.30	0	2105728..2105997	+	89	189025217	-	BAbS19_I20290	-	Ribosomal protein S15
1950	 57.62	0	2106281..2108425	+	714	189025218	-	BAbS19_I20300	-	Ribosomal protein S1
1951	 58.72	0	2108536..2109303	+	255	189025219	-	BAbS19_I20310	-	SAM (and some other nucleotide) binding motif
1952	 55.86	0	2109227..2109559	+	110	189025220	-	BAbS19_I20320	-	Methyltransferase
1953	 58.49	0	2109607..2110425	-	272	189025221	-	BAbS19_I20330	-	possible enoyl-(acyl-carrier-protein) reductase
1954	 58.91	0	2110440..2111663	-	407	189025222	-	BAbS19_I20340	-	Beta-ketoacyl synthase
1955	 62.04	+1	2111829..2112347	-	172	189025223	-	BAbS19_I20350	-	3-hydroxydecanoyl-ACP dehydratase
1956	 58.33	0	2112594..2113037	+	147	189025224	-	BAbS19_I20360	-	Ferric-uptake regulator
1957	 55.64	0	2113203..2113982	+	259	189025225	-	BAbS19_I20370	-	Lipoprotein YaeC family
1958	 60.73	0	2114027..2114599	-	190	189025226	-	BAbS19_I20380	-	Bacterial SH3-like region
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.