IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1833	 58.59	0	1980352..1981986	-	544	189025101	-	BAbS19_I19130	-	Glucose-methanol-choline oxidoreductase
1834	 60.39	0	1981997..1982761	-	254	189025102	-	BAbS19_I19140	-	Short-chain dehydrogenase/reductase SDR
1835	 59.12	0	1982758..1984242	-	494	189025103	-	BAbS19_I19150	-	oxidoreductase, GMC family
1836	 59.93	0	1984255..1985769	-	504	189025104	-	BAbS19_I19160	-	Aldehyde dehydrogenase
1837	 61.00	0	1985769..1986545	-	258	189025105	-	BAbS19_I19170	-	Enoyl-CoA hydratase/isomerase
1838	 57.60	0	1987025..1988149	-	374	189025106	-	BAbS19_I19180	-	Acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
1839	 59.78	0	1988155..1989156	-	333	189025107	-	BAbS19_I19190	-	Oxidoreductase
1840	 58.92	0	1989135..1990193	-	352	189025108	-	BAbS19_I19200	-	transcriptional regulator, LacI family
1841	 58.80	0	1990444..1991613	+	389	189025109	-	BAbS19_I19210	-	hypothetical protein
1842	 59.34	0	1991647..1992669	-	340	189025110	-	BAbS19_I19220	-	Bacterial luciferase
1843	 60.35	0	1992938..1993903	+	321	189025111	-	BAbS19_I19230	-	Protein of unknown function DUF534
1844	 58.64	0	1994547..1995431	+	294	189025112	-	BAbS19_I19240	-	Bacterial inner-membrane translocator
1845	 59.50	0	1995428..1996222	+	264	189025113	-	BAbS19_I19250	-	ATP/GTP-binding site motif A (P-loop)
1846	 59.96	0	1996384..1997427	+	347	189025114	-	BAbS19_I19260	-	putative DNA polymerase III, delta subunit
1847	 56.35	0	1997521..1998402	-	293	189025115	-	BAbS19_I19270	-	ParB-like nuclease
1848	 54.14	0	1998446..1999243	-	265	189025116	-	BAbS19_I19280	-	NifH/frxC family protein
1849	 54.52	0	1999296..1999937	-	213	189025117	-	BAbS19_I19290	-	Glucose inhibited division protein
1850	 56.78	0	1999934..2001844	-	636	189025118	-	BAbS19_I19300	-	glucose-inhibited division protein A
1851	 52.97	-1	2002071..2003399	-	442	189025119	-	BAbS19_I19310	-	tRNA modification GTPase
1852	 54.87	0	2003514..2005514	+	666	189025120	-	BAbS19_I19320	-	Protein of unknown function DUF255
1853	 55.21	0	2005599..2006864	-	421	189025121	-	BAbS19_I19330	-	transcription termination factor Rho
1854	 53.82	-1	2007246..2007782	-	178	189025122	-	BAbS19_I19340	-	Conserved hypothetical protein 701
1855	 55.65	0	2007779..2008804	-	341	189025123	-	BAbS19_I19350	-	Uroporphyrinogen decarboxylase (URO-D)
1856	 55.71	0	2009257..2010096	+	279	189025124	-	BAbS19_I19360	-	Protein of unknown function DUF299
1857	 54.67	0	2010093..2010692	+	199	189025125	-	BAbS19_I19370	-	Maf-like protein
1858	 58.39	0	2010685..2011554	+	289	189025126	-	BAbS19_I19380	-	shikimate 5-dehydrogenase
1859	 57.21	0	2011551..2012153	+	200	189025127	-	BAbS19_I19390	-	Dephospho-CoA kinase
1860	 57.73	0	2012195..2012899	+	234	189025128	-	BAbS19_I19400	-	DNA polymerase III, epsilon subunit
1861	 56.91	0	2012957..2013448	-	163	189025129	-	BAbS19_I19410	-	Bacterial protein export chaperone SecB
1862	 59.64	0	2013568..2014065	-	165	189025130	-	BAbS19_I19420	-	FxsA cytoplasmic membrane protein
1863	 55.46	0	2014282..2014977	+	231	189025131	-	BAbS19_I19430	-	Calcium-binding EF-hand
1864	 60.20	0	2015053..2016150	+	365	189025132	-	BAbS19_I19440	-	MltA family
1865	 63.18	+1	2016156..2016758	+	200	189025133	-	BAbS19_I19450	-	Smr protein/MutS2 C-terminal
1866	 58.01	0	2016755..2017135	+	126	189025134	-	BAbS19_I19460	-	Helix-turn-helix motif
1867	 56.47	0	2017144..2018163	-	339	189025135	-	BAbS19_I19470	-	hypothetical protein
1868	 59.77	0	2018310..2019614	-	434	189025136	-	BAbS19_I19480	-	CbxX/CfqX superfamily
1869	 59.46	0	2019688..2020242	-	184	189025137	-	BAbS19_I19490	-	Pyridine nucleotide-disulphide oxidoreductase, class-II
1870	 59.77	0	2020539..2021147	+	202	189025138	-	BAbS19_I19500	-	Imidazoleglycerol-phosphate dehydratase
1871	 59.61	0	2021257..2021766	+	169	189025139	-	BAbS19_I19510	-	hypothetical protein
1872	 58.06	0	2021769..2022419	+	216	189025140	-	BAbS19_I19520	-	Glutamine amidotransferase class-I
1873	 59.70	0	2022424..2023155	+	243	189025141	-	BAbS19_I19530	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1874	 60.31	0	2023152..2023937	+	261	189025142	-	BAbS19_I19540	-	imidazole glycerol phosphate synthase subunit HisF
1875	 62.04	+1	2024073..2024396	+	107	189025143	-	BAbS19_I19550	-	Phosphoribosyl pyrophosphohydrolase/cyclohydrolase
1876	 57.48	0	2024411..2025379	+	322	189025144	-	BAbS19_I19560	-	pantothenate kinase
1877	 59.36	0	2025442..2025879	-	145	189025145	-	BAbS19_I19570	-	Class I peptide chain release factor domain protein
1878	 59.69	0	2026125..2027600	-	491	189025146	-	BAbS19_I19580	-	phosphoenolpyruvate carboxykinase
1879	 58.33	0	2028003..2028722	+	239	189025147	-	BAbS19_I19590	-	Transcriptional regulatory protein
1880	 59.58	0	2028833..2030638	+	601	189025148	-	BAbS19_I19600	-	BvrS, sensor histidine kinase
1881	 60.21	0	2030664..2031143	+	159	189025149	-	BAbS19_I19610	-	ATP/GTP-binding site motif A (P-loop)
1882	 55.22	0	2031395..2031796	+	133	189025150	-	BAbS19_I19620	-	PTS system fructose subfamily IIA component
1883	 59.68	0	2031800..2032114	+	104	189025151	-	BAbS19_I19630	-	PtsH, phosphocarrier protein HPr
1884	 58.24	0	2032422..2033822	+	466	189025152	-	BAbS19_I19640	-	S-adenosyl-L-homocysteine hydrolase
1885	 60.54	0	2034207..2036786	+	859	189025153	-	BAbS19_I19650	-	sensory box histidine kinase, hypothetical
1886	 59.27	0	2036795..2038336	+	513	189025154	-	BAbS19_I19660	-	ATP/GTP-binding protein
1887	 59.31	0	2038323..2039042	+	239	189025155	-	BAbS19_I19670	-	Nucleotidyl transferase
1888	 62.93	+1	2039057..2042215	+	1052	189025156	-	BAbS19_I19680	-	hypothetical protein
1889	 61.42	+1	2042212..2045754	+	1180	189025157	-	BAbS19_I19690	-	UvrD/REP helicase
1890	 58.33	0	2045936..2046259	+	107	189025158	-	BAbS19_I19700	-	Thioredoxin
1891	 59.89	0	2046313..2047641	-	442	189025159	-	BAbS19_I19710	-	Folylpolyglutamate synthetase
1892	 57.28	0	2047644..2048549	-	301	189025160	-	BAbS19_I19720	-	Acetyl-CoA carboxylase carboxyl transferase, beta subunit
1893	 58.81	0	2048610..2049449	-	279	189025161	-	BAbS19_I19730	-	Tryptophan synthase, alpha chain
1894	 62.61	+1	2049446..2049913	-	155	189025162	-	BAbS19_I19740	-	hypothetical protein
1895	 60.20	0	2049916..2051136	-	406	189025163	-	BAbS19_I19750	-	tryptophan synthase subunit beta
1896	 58.59	0	2051156..2051824	-	222	189025164	-	BAbS19_I19760	-	N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
1897	 57.70	0	2051863..2052498	-	211	189025165	-	BAbS19_I19770	-	hypothetical protein
1898	 57.06	0	2052495..2052671	-	58	189025166	-	BAbS19_I19780	-	Protein of unknown function DUF45
1899	 60.67	0	2053365..2053664	-	99	189025167	-	BAbS19_I19790	-	Hypothetical Cytosolic Protein
1900	 55.56	0	2053695..2053811	-	38	189025168	-	BAbS19_I19800	-	hypothetical protein
1901	 63.45	+1	2054181..2055143	-	320	189025169	-	BAbS19_I19810	-	benzoate transport protein, putative
1902	 60.23	0	2055157..2055948	-	263	189025170	-	BAbS19_I19820	-	Esterase/lipase/thioesterase
1903	 56.22	0	2056584..2056784	+	66	189025171	-	BAbS19_I19830	-	Initiation factor 3
1904	 54.63	0	2056913..2057527	+	204	189025172	-	BAbS19_I19840	-	nickel-cobalt-cadmium resistance protein
1905	 57.71	0	2057794..2057994	+	66	189025173	-	BAbS19_I19850	-	Ribosomal protein L35
1906	 57.78	0	2058022..2058426	+	134	189025174	-	BAbS19_I19860	-	Ribosomal protein L20
1907	 58.13	0	2058525..2059367	+	280	189025175	-	BAbS19_I19870	-	hypothetical protein
1908	 59.19	0	2059455..2060564	+	369	189025176	-	BAbS19_I19880	-	phenylalanyl-tRNA synthetase alpha subunit
1909	 60.37	0	2060586..2063000	+	804	189025177	-	BAbS19_I19890	-	phenylalanyl-tRNA synthetase beta subunit
1910	 57.85	0	2063070..2064056	+	328	189025178	-	BAbS19_I19900	-	Oxidoreductase
1911	 58.41	0	2064282..2066195	+	637	189025179	-	BAbS19_I19910	-	Heat shock protein Hsp70
1912	 59.61	0	2066440..2067573	+	377	189025180	-	BAbS19_I19920	-	DnaJ, chaperone protein DnaJ
1913	 56.17	0	2067694..2068293	+	199	189025181	-	BAbS19_I19930	-	SAM (and some other nucleotide) binding motif
1914	 60.11	0	2068503..2069219	+	238	189025182	-	BAbS19_I19940	-	Orotidine 5'-phosphate decarboxylase
1915	 58.68	0	2069268..2069555	+	95	189025183	-	BAbS19_I19950	-	hypothetical protein
1916	 58.73	0	2069593..2070651	-	352	189025184	-	BAbS19_I19960	-	Senescence marker protein-30 (SMP-30)
1917	 58.68	0	2070716..2071654	+	312	189025185	-	BAbS19_I19970	-	glutathione synthetase
1918	 61.75	+1	2071709..2073295	+	528	189025186	-	BAbS19_I19980	-	Mg chelatase-related protein
1919	 57.58	0	2073344..2073970	-	208	189025187	-	BAbS19_I19990	-	Band 4.1 domain protein
1920	 61.06	0	2074412..2074768	-	118	189025188	-	BAbS19_I20000	-	Rare lipoprotein A
1921	 60.19	0	2075312..2075728	+	138	189025189	-	BAbS19_I20010	-	Hypothetical Membrane Spanning Protein
1922	 56.73	0	2075883..2076929	+	348	189025190	-	BAbS19_I20020	-	phosphate ABC transporter, phosphate-binding protein
1923	 60.30	0	2077071..2078561	+	496	189025191	-	BAbS19_I20030	-	PstC, phosphate ABC transporter, permease protein
1924	 59.88	0	2078561..2079871	+	436	189025192	-	BAbS19_I20040	-	Binding-protein-dependent transport systems inner membrane component
1925	 60.08	0	2079936..2080709	+	257	189025193	-	BAbS19_I20050	-	ATP/GTP-binding site motif A (P-loop)
1926	 57.54	0	2080775..2081497	+	240	189025194	-	BAbS19_I20060	-	PhoU
1927	 61.86	+1	2081615..2082301	+	228	189025195	-	BAbS19_I20070	-	Transcriptional regulatory protein
1928	 62.08	+1	2082887..2083867	+	326	189025196	-	BAbS19_I20080	-	lipoprotein, putative
1929	 55.80	0	2083978..2084253	-	91	189025197	-	BAbS19_I20090	-	lipoprotein, putative
1930	 60.77	0	2084378..2085631	+	417	189025198	-	BAbS19_I20100	-	Thermophilic metalloprotease (M29)
1931	 55.62	0	2085792..2086289	-	165	189025199	-	BAbS19_I20110	-	Ferritin:DNA-binding protein Dps
1932	 60.29	0	2086572..2087261	+	229	189025200	-	BAbS19_I20120	-	Glycoprotease (M22) metalloprotease
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.