IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1808	 58.63	0	1955196..1955867	-	223	189025076	-	BAbS19_I18880	-	Protein of unknown function DUF165
1809	 59.52	0	1955947..1956240	-	97	189025077	-	BAbS19_I18890	-	Ribosomal protein L28
1810	 55.16	0	1956566..1957417	+	283	189025078	-	BAbS19_I18900	-	hypothetical protein
1811	 58.87	0	1957529..1957951	-	140	189025079	-	BAbS19_I18910	-	Bacterial regulatory protein, MerR family
1812	 60.61	0	1958028..1960454	+	808	189025080	-	BAbS19_I18920	-	CadA-1, cadmium-translocating P-type ATPase
1813	 44.54	-2	1960933..1961610	+	225	189025081	-	BAbS19_I18930	-	hypothetical protein
1814	 41.25	-2	1961637..1962722	+	361	189025082	-	BAbS19_I18940	-	hypothetical protein
1815	 61.60	+1	1962895..1964808	-	637	189025083	-	BAbS19_I18950	-	Von Willebrand factor, type A
1816	 57.75	0	1964882..1965868	-	328	189025084	-	BAbS19_I18960	-	Chaperonin clpA/B
1817	 56.83	0	1966143..1966772	-	209	189025085	-	BAbS19_I18970	-	Heat shock protein DnaJ, N-terminal
1818	 57.78	0	1966959..1967273	+	104	189025086	-	BAbS19_I18980	-	Basic helix-loop-helix dimerization domain bHLH
1819	 59.40	0	1967298..1968605	-	435	189025087	-	BAbS19_I18990	-	CBS domain:CBS:Transporter associated domain protein
1820	 60.25	0	1968669..1969805	-	378	189025088	-	BAbS19_I19000	-	Pyruvate kinase
1821	 58.21	0	1969898..1970500	-	200	189025089	-	BAbS19_I19010	-	Shikimate kinase
1822	 55.91	0	1970646..1970831	+	61	189025090	-	BAbS19_I19020	-	hypothetical protein
1823	 59.63	0	1970834..1971757	+	307	189025091	-	BAbS19_I19030	-	Phage integrase
1824	 59.54	0	1971896..1972849	+	317	189025092	-	BAbS19_I19040	-	Acetyl-CoA carboxylase, alpha subunit
1825	 58.50	0	1973071..1974282	+	403	189025093	-	BAbS19_I19050	-	Pollen allergen Poa pIX/Phl pVI, C-terminal
1826	 54.79	0	1974258..1974518	+	86	189025094	-	BAbS19_I19060	-	hypothetical protein
1827	 59.59	0	1974536..1975708	-	390	189025095	-	BAbS19_I19070	-	ATP/GTP-binding site motif A (P-loop)
1828	 60.83	0	1975710..1976822	-	370	189025096	-	BAbS19_I19080	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
1829	 59.54	0	1977120..1978283	+	387	189025097	-	BAbS19_I19090	-	Antifreeze protein, type I
1830	 59.08	0	1978482..1979246	-	254	189025098	-	BAbS19_I19100	-	Glucose/ribitol dehydrogenase
1831	 50.57	-1	1979354..1979788	+	144	189025099	-	BAbS19_I19110	-	Protein of unknown function DUF636
1832	 44.44	-2	1979887..1980282	+	131	189025100	-	BAbS19_I19120	-	ATP/GTP-binding site motif A (P-loop)
1833	 58.59	0	1980352..1981986	-	544	189025101	-	BAbS19_I19130	-	Glucose-methanol-choline oxidoreductase
1834	 60.39	0	1981997..1982761	-	254	189025102	-	BAbS19_I19140	-	Short-chain dehydrogenase/reductase SDR
1835	 59.12	0	1982758..1984242	-	494	189025103	-	BAbS19_I19150	-	oxidoreductase, GMC family
1836	 59.93	0	1984255..1985769	-	504	189025104	-	BAbS19_I19160	-	Aldehyde dehydrogenase
1837	 61.00	0	1985769..1986545	-	258	189025105	-	BAbS19_I19170	-	Enoyl-CoA hydratase/isomerase
1838	 57.60	0	1987025..1988149	-	374	189025106	-	BAbS19_I19180	-	Acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
1839	 59.78	0	1988155..1989156	-	333	189025107	-	BAbS19_I19190	-	Oxidoreductase
1840	 58.92	0	1989135..1990193	-	352	189025108	-	BAbS19_I19200	-	transcriptional regulator, LacI family
1841	 58.80	0	1990444..1991613	+	389	189025109	-	BAbS19_I19210	-	hypothetical protein
1842	 59.34	0	1991647..1992669	-	340	189025110	-	BAbS19_I19220	-	Bacterial luciferase
1843	 60.35	0	1992938..1993903	+	321	189025111	-	BAbS19_I19230	-	Protein of unknown function DUF534
1844	 58.64	0	1994547..1995431	+	294	189025112	-	BAbS19_I19240	-	Bacterial inner-membrane translocator
1845	 59.50	0	1995428..1996222	+	264	189025113	-	BAbS19_I19250	-	ATP/GTP-binding site motif A (P-loop)
1846	 59.96	0	1996384..1997427	+	347	189025114	-	BAbS19_I19260	-	putative DNA polymerase III, delta subunit
1847	 56.35	0	1997521..1998402	-	293	189025115	-	BAbS19_I19270	-	ParB-like nuclease
1848	 54.14	0	1998446..1999243	-	265	189025116	-	BAbS19_I19280	-	NifH/frxC family protein
1849	 54.52	0	1999296..1999937	-	213	189025117	-	BAbS19_I19290	-	Glucose inhibited division protein
1850	 56.78	0	1999934..2001844	-	636	189025118	-	BAbS19_I19300	-	glucose-inhibited division protein A
1851	 52.97	-1	2002071..2003399	-	442	189025119	-	BAbS19_I19310	-	tRNA modification GTPase
1852	 54.87	0	2003514..2005514	+	666	189025120	-	BAbS19_I19320	-	Protein of unknown function DUF255
1853	 55.21	0	2005599..2006864	-	421	189025121	-	BAbS19_I19330	-	transcription termination factor Rho
1854	 53.82	-1	2007246..2007782	-	178	189025122	-	BAbS19_I19340	-	Conserved hypothetical protein 701
1855	 55.65	0	2007779..2008804	-	341	189025123	-	BAbS19_I19350	-	Uroporphyrinogen decarboxylase (URO-D)
1856	 55.71	0	2009257..2010096	+	279	189025124	-	BAbS19_I19360	-	Protein of unknown function DUF299
1857	 54.67	0	2010093..2010692	+	199	189025125	-	BAbS19_I19370	-	Maf-like protein
1858	 58.39	0	2010685..2011554	+	289	189025126	-	BAbS19_I19380	-	shikimate 5-dehydrogenase
1859	 57.21	0	2011551..2012153	+	200	189025127	-	BAbS19_I19390	-	Dephospho-CoA kinase
1860	 57.73	0	2012195..2012899	+	234	189025128	-	BAbS19_I19400	-	DNA polymerase III, epsilon subunit
1861	 56.91	0	2012957..2013448	-	163	189025129	-	BAbS19_I19410	-	Bacterial protein export chaperone SecB
1862	 59.64	0	2013568..2014065	-	165	189025130	-	BAbS19_I19420	-	FxsA cytoplasmic membrane protein
1863	 55.46	0	2014282..2014977	+	231	189025131	-	BAbS19_I19430	-	Calcium-binding EF-hand
1864	 60.20	0	2015053..2016150	+	365	189025132	-	BAbS19_I19440	-	MltA family
1865	 63.18	+1	2016156..2016758	+	200	189025133	-	BAbS19_I19450	-	Smr protein/MutS2 C-terminal
1866	 58.01	0	2016755..2017135	+	126	189025134	-	BAbS19_I19460	-	Helix-turn-helix motif
1867	 56.47	0	2017144..2018163	-	339	189025135	-	BAbS19_I19470	-	hypothetical protein
1868	 59.77	0	2018310..2019614	-	434	189025136	-	BAbS19_I19480	-	CbxX/CfqX superfamily
1869	 59.46	0	2019688..2020242	-	184	189025137	-	BAbS19_I19490	-	Pyridine nucleotide-disulphide oxidoreductase, class-II
1870	 59.77	0	2020539..2021147	+	202	189025138	-	BAbS19_I19500	-	Imidazoleglycerol-phosphate dehydratase
1871	 59.61	0	2021257..2021766	+	169	189025139	-	BAbS19_I19510	-	hypothetical protein
1872	 58.06	0	2021769..2022419	+	216	189025140	-	BAbS19_I19520	-	Glutamine amidotransferase class-I
1873	 59.70	0	2022424..2023155	+	243	189025141	-	BAbS19_I19530	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1874	 60.31	0	2023152..2023937	+	261	189025142	-	BAbS19_I19540	-	imidazole glycerol phosphate synthase subunit HisF
1875	 62.04	+1	2024073..2024396	+	107	189025143	-	BAbS19_I19550	-	Phosphoribosyl pyrophosphohydrolase/cyclohydrolase
1876	 57.48	0	2024411..2025379	+	322	189025144	-	BAbS19_I19560	-	pantothenate kinase
1877	 59.36	0	2025442..2025879	-	145	189025145	-	BAbS19_I19570	-	Class I peptide chain release factor domain protein
1878	 59.69	0	2026125..2027600	-	491	189025146	-	BAbS19_I19580	-	phosphoenolpyruvate carboxykinase
1879	 58.33	0	2028003..2028722	+	239	189025147	-	BAbS19_I19590	-	Transcriptional regulatory protein
1880	 59.58	0	2028833..2030638	+	601	189025148	-	BAbS19_I19600	-	BvrS, sensor histidine kinase
1881	 60.21	0	2030664..2031143	+	159	189025149	-	BAbS19_I19610	-	ATP/GTP-binding site motif A (P-loop)
1882	 55.22	0	2031395..2031796	+	133	189025150	-	BAbS19_I19620	-	PTS system fructose subfamily IIA component
1883	 59.68	0	2031800..2032114	+	104	189025151	-	BAbS19_I19630	-	PtsH, phosphocarrier protein HPr
1884	 58.24	0	2032422..2033822	+	466	189025152	-	BAbS19_I19640	-	S-adenosyl-L-homocysteine hydrolase
1885	 60.54	0	2034207..2036786	+	859	189025153	-	BAbS19_I19650	-	sensory box histidine kinase, hypothetical
1886	 59.27	0	2036795..2038336	+	513	189025154	-	BAbS19_I19660	-	ATP/GTP-binding protein
1887	 59.31	0	2038323..2039042	+	239	189025155	-	BAbS19_I19670	-	Nucleotidyl transferase
1888	 62.93	+1	2039057..2042215	+	1052	189025156	-	BAbS19_I19680	-	hypothetical protein
1889	 61.42	+1	2042212..2045754	+	1180	189025157	-	BAbS19_I19690	-	UvrD/REP helicase
1890	 58.33	0	2045936..2046259	+	107	189025158	-	BAbS19_I19700	-	Thioredoxin
1891	 59.89	0	2046313..2047641	-	442	189025159	-	BAbS19_I19710	-	Folylpolyglutamate synthetase
1892	 57.28	0	2047644..2048549	-	301	189025160	-	BAbS19_I19720	-	Acetyl-CoA carboxylase carboxyl transferase, beta subunit
1893	 58.81	0	2048610..2049449	-	279	189025161	-	BAbS19_I19730	-	Tryptophan synthase, alpha chain
1894	 62.61	+1	2049446..2049913	-	155	189025162	-	BAbS19_I19740	-	hypothetical protein
1895	 60.20	0	2049916..2051136	-	406	189025163	-	BAbS19_I19750	-	tryptophan synthase subunit beta
1896	 58.59	0	2051156..2051824	-	222	189025164	-	BAbS19_I19760	-	N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
1897	 57.70	0	2051863..2052498	-	211	189025165	-	BAbS19_I19770	-	hypothetical protein
1898	 57.06	0	2052495..2052671	-	58	189025166	-	BAbS19_I19780	-	Protein of unknown function DUF45
1899	 60.67	0	2053365..2053664	-	99	189025167	-	BAbS19_I19790	-	Hypothetical Cytosolic Protein
1900	 55.56	0	2053695..2053811	-	38	189025168	-	BAbS19_I19800	-	hypothetical protein
1901	 63.45	+1	2054181..2055143	-	320	189025169	-	BAbS19_I19810	-	benzoate transport protein, putative
1902	 60.23	0	2055157..2055948	-	263	189025170	-	BAbS19_I19820	-	Esterase/lipase/thioesterase
1903	 56.22	0	2056584..2056784	+	66	189025171	-	BAbS19_I19830	-	Initiation factor 3
1904	 54.63	0	2056913..2057527	+	204	189025172	-	BAbS19_I19840	-	nickel-cobalt-cadmium resistance protein
1905	 57.71	0	2057794..2057994	+	66	189025173	-	BAbS19_I19850	-	Ribosomal protein L35
1906	 57.78	0	2058022..2058426	+	134	189025174	-	BAbS19_I19860	-	Ribosomal protein L20
1907	 58.13	0	2058525..2059367	+	280	189025175	-	BAbS19_I19870	-	hypothetical protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.