IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1762	 54.13	0	1907810..1909117	+	435	189025030	-	BAbS19_I18420	-	Glucarate transporter
1763	 56.21	0	1909604..1909756	-	50	189025031	-	BAbS19_I18430	-	hypothetical protein
1764	 58.96	0	1909803..1911086	-	427	189025032	-	BAbS19_I18440	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
1765	 57.78	0	1911266..1911715	-	149	189025033	-	BAbS19_I18450	-	Universal stress protein (Usp)
1766	 57.14	0	1911962..1912423	+	153	189025034	-	BAbS19_I18460	-	ATP/GTP-binding site motif A (P-loop)
1767	 58.11	0	1912386..1912946	+	186	189025035	-	BAbS19_I18470	-	Cysteine synthase A
1768	 57.31	0	1913437..1914312	-	291	189025036	-	BAbS19_I18480	-	3-hydroxybutyryl-CoA dehydrogenase
1769	 60.65	0	1914785..1915714	-	309	189025037	-	BAbS19_I18490	-	Antifreeze protein, type I
1770	 58.10	0	1915867..1916613	-	248	189025038	-	BAbS19_I18500	-	Electron transfer flavoprotein beta-subunit
1771	 59.37	0	1916949..1917647	+	232	189025039	-	BAbS19_I18510	-	ExsB protein
1772	 56.28	0	1917647..1918012	+	121	189025040	-	BAbS19_I18520	-	6-pyruvoyl tetrahydropterin synthase and hypothetical protein
1773	 57.66	0	1918213..1918767	+	184	189025041	-	BAbS19_I18530	-	Proline-rich extensin
1774	 60.71	0	1918904..1919491	-	195	189025042	-	BAbS19_I18540	-	Protein of unknown function DUF80
1775	 54.90	0	1919493..1919696	-	67	189025043	-	BAbS19_I18550	-	hypothetical protein
1776	 60.02	0	1919726..1920568	-	280	189025044	-	BAbS19_I18560	-	Short-chain dehydrogenase/reductase SDR
1777	 56.68	0	1920726..1921586	+	286	189025045	-	BAbS19_I18570	-	Ribonuclease BN
1778	 60.70	0	1921604..1922089	+	161	189025046	-	BAbS19_I18580	-	Protein of unknown function DUF188
1779	 58.72	0	1922097..1922813	-	238	189025047	-	BAbS19_I18590	-	Sodium:dicarboxylate symporter
1780	 59.53	0	1922867..1924267	+	466	189025048	-	BAbS19_I18600	-	Fumarate lyase
1781	 58.20	0	1924372..1924560	+	62	189025049	-	BAbS19_I18610	-	hypothetical protein
1782	 61.06	0	1924588..1925853	+	421	189025050	-	BAbS19_I18620	-	diaminopimelate decarboxylase
1783	 61.07	0	1925952..1928612	+	886	189025051	-	BAbS19_I18630	-	hypothetical protein
1784	 55.68	0	1928652..1929188	-	178	189025052	-	BAbS19_I18640	-	Phosphoribosyltransferase
1785	 62.95	+1	1929337..1930116	+	259	189025053	-	BAbS19_I18650	-	Generic methyltransferase
1786	 59.17	0	1930261..1931367	+	368	189025054	-	BAbS19_I18660	-	histidinol-phosphate aminotransferase
1787	 60.66	0	1931372..1932337	+	321	189025055	-	BAbS19_I18670	-	Prephenate dehydrogenase
1788	 57.75	0	1932306..1933325	-	339	189025056	-	BAbS19_I18680	-	hypothetical protein
1789	 57.93	0	1933537..1934097	+	186	189025057	-	BAbS19_I18690	-	ChaC-like protein
1790	 53.26	-1	1934430..1934720	+	96	189025058	-	BAbS19_I18700	-	Family of unknown function YGGT
1791	 55.18	0	1934891..1935421	-	176	189025059	-	BAbS19_I18710	-	Inorganic pyrophosphatase
1792	 59.58	0	1935574..1936293	-	239	189025060	-	BAbS19_I18720	-	Mercuric reductase
1793	 54.49	0	1936535..1937437	-	300	189025061	-	BAbS19_I18730	-	hypothetical protein
1794	 60.88	0	1937434..1938435	-	333	189025062	-	BAbS19_I18740	-	hypothetical protein
1795	 60.15	0	1938428..1939087	-	219	189025063	-	BAbS19_I18750	-	ATP/GTP-binding site motif A (P-loop)
1796	 54.58	0	1939396..1939668	-	90	189025064	-	BAbS19_I18760	-	hypothetical protein
1797	 58.52	0	1940146..1940832	+	228	189025065	-	BAbS19_I18770	-	Aromatic amino acid permease
1798	 54.89	0	1941213..1941908	+	231	189025066	-	BAbS19_I18780	-	hypothetical protein
1799	 57.24	0	1941948..1942817	+	289	189025067	-	BAbS19_I18790	-	Exodeoxyribonuclease III
1800	 61.90	+1	1942823..1943284	-	153	189025068	-	BAbS19_I18800	-	cAMP-dependent protein kinase
1801	 55.99	0	1943319..1944002	-	227	189025069	-	BAbS19_I18810	-	Transcriptional regulatory protein
1802	 61.17	0	1944210..1944755	+	181	189025070	-	BAbS19_I18820	-	Hypothetical Cytosolic Protein
1803	 44.79	-2	1945506..1946648	-	380	189025071	-	BAbS19_I18830	-	intimin/invasin family protein
1804	 43.33	-2	1946657..1947736	-	359	189025072	-	BAbS19_I18840	-	Glyceraldehyde 3-phosphate dehydrogenase
1805	 43.42	-2	1948539..1950095	-	518	189025073	-	BAbS19_I18850	-	hypothetical protein
1806	 51.16	-1	1950733..1952964	+	743	189025074	-	BAbS19_I18860	-	outer membrane autotransporter
1807	 51.67	-1	1953196..1955055	+	619	189025075	-	BAbS19_I18870	-	outer membrane autotransporter
1808	 58.63	0	1955196..1955867	-	223	189025076	-	BAbS19_I18880	-	Protein of unknown function DUF165
1809	 59.52	0	1955947..1956240	-	97	189025077	-	BAbS19_I18890	-	Ribosomal protein L28
1810	 55.16	0	1956566..1957417	+	283	189025078	-	BAbS19_I18900	-	hypothetical protein
1811	 58.87	0	1957529..1957951	-	140	189025079	-	BAbS19_I18910	-	Bacterial regulatory protein, MerR family
1812	 60.61	0	1958028..1960454	+	808	189025080	-	BAbS19_I18920	-	CadA-1, cadmium-translocating P-type ATPase
1813	 44.54	-2	1960933..1961610	+	225	189025081	-	BAbS19_I18930	-	hypothetical protein
1814	 41.25	-2	1961637..1962722	+	361	189025082	-	BAbS19_I18940	-	hypothetical protein
1815	 61.60	+1	1962895..1964808	-	637	189025083	-	BAbS19_I18950	-	Von Willebrand factor, type A
1816	 57.75	0	1964882..1965868	-	328	189025084	-	BAbS19_I18960	-	Chaperonin clpA/B
1817	 56.83	0	1966143..1966772	-	209	189025085	-	BAbS19_I18970	-	Heat shock protein DnaJ, N-terminal
1818	 57.78	0	1966959..1967273	+	104	189025086	-	BAbS19_I18980	-	Basic helix-loop-helix dimerization domain bHLH
1819	 59.40	0	1967298..1968605	-	435	189025087	-	BAbS19_I18990	-	CBS domain:CBS:Transporter associated domain protein
1820	 60.25	0	1968669..1969805	-	378	189025088	-	BAbS19_I19000	-	Pyruvate kinase
1821	 58.21	0	1969898..1970500	-	200	189025089	-	BAbS19_I19010	-	Shikimate kinase
1822	 55.91	0	1970646..1970831	+	61	189025090	-	BAbS19_I19020	-	hypothetical protein
1823	 59.63	0	1970834..1971757	+	307	189025091	-	BAbS19_I19030	-	Phage integrase
1824	 59.54	0	1971896..1972849	+	317	189025092	-	BAbS19_I19040	-	Acetyl-CoA carboxylase, alpha subunit
1825	 58.50	0	1973071..1974282	+	403	189025093	-	BAbS19_I19050	-	Pollen allergen Poa pIX/Phl pVI, C-terminal
1826	 54.79	0	1974258..1974518	+	86	189025094	-	BAbS19_I19060	-	hypothetical protein
1827	 59.59	0	1974536..1975708	-	390	189025095	-	BAbS19_I19070	-	ATP/GTP-binding site motif A (P-loop)
1828	 60.83	0	1975710..1976822	-	370	189025096	-	BAbS19_I19080	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
1829	 59.54	0	1977120..1978283	+	387	189025097	-	BAbS19_I19090	-	Antifreeze protein, type I
1830	 59.08	0	1978482..1979246	-	254	189025098	-	BAbS19_I19100	-	Glucose/ribitol dehydrogenase
1831	 50.57	-1	1979354..1979788	+	144	189025099	-	BAbS19_I19110	-	Protein of unknown function DUF636
1832	 44.44	-2	1979887..1980282	+	131	189025100	-	BAbS19_I19120	-	ATP/GTP-binding site motif A (P-loop)
1833	 58.59	0	1980352..1981986	-	544	189025101	-	BAbS19_I19130	-	Glucose-methanol-choline oxidoreductase
1834	 60.39	0	1981997..1982761	-	254	189025102	-	BAbS19_I19140	-	Short-chain dehydrogenase/reductase SDR
1835	 59.12	0	1982758..1984242	-	494	189025103	-	BAbS19_I19150	-	oxidoreductase, GMC family
1836	 59.93	0	1984255..1985769	-	504	189025104	-	BAbS19_I19160	-	Aldehyde dehydrogenase
1837	 61.00	0	1985769..1986545	-	258	189025105	-	BAbS19_I19170	-	Enoyl-CoA hydratase/isomerase
1838	 57.60	0	1987025..1988149	-	374	189025106	-	BAbS19_I19180	-	Acetyl-CoA:acetoacetyl-CoA transferase alpha subunit
1839	 59.78	0	1988155..1989156	-	333	189025107	-	BAbS19_I19190	-	Oxidoreductase
1840	 58.92	0	1989135..1990193	-	352	189025108	-	BAbS19_I19200	-	transcriptional regulator, LacI family
1841	 58.80	0	1990444..1991613	+	389	189025109	-	BAbS19_I19210	-	hypothetical protein
1842	 59.34	0	1991647..1992669	-	340	189025110	-	BAbS19_I19220	-	Bacterial luciferase
1843	 60.35	0	1992938..1993903	+	321	189025111	-	BAbS19_I19230	-	Protein of unknown function DUF534
1844	 58.64	0	1994547..1995431	+	294	189025112	-	BAbS19_I19240	-	Bacterial inner-membrane translocator
1845	 59.50	0	1995428..1996222	+	264	189025113	-	BAbS19_I19250	-	ATP/GTP-binding site motif A (P-loop)
1846	 59.96	0	1996384..1997427	+	347	189025114	-	BAbS19_I19260	-	putative DNA polymerase III, delta subunit
1847	 56.35	0	1997521..1998402	-	293	189025115	-	BAbS19_I19270	-	ParB-like nuclease
1848	 54.14	0	1998446..1999243	-	265	189025116	-	BAbS19_I19280	-	NifH/frxC family protein
1849	 54.52	0	1999296..1999937	-	213	189025117	-	BAbS19_I19290	-	Glucose inhibited division protein
1850	 56.78	0	1999934..2001844	-	636	189025118	-	BAbS19_I19300	-	glucose-inhibited division protein A
1851	 52.97	-1	2002071..2003399	-	442	189025119	-	BAbS19_I19310	-	tRNA modification GTPase
1852	 54.87	0	2003514..2005514	+	666	189025120	-	BAbS19_I19320	-	Protein of unknown function DUF255
1853	 55.21	0	2005599..2006864	-	421	189025121	-	BAbS19_I19330	-	transcription termination factor Rho
1854	 53.82	-1	2007246..2007782	-	178	189025122	-	BAbS19_I19340	-	Conserved hypothetical protein 701
1855	 55.65	0	2007779..2008804	-	341	189025123	-	BAbS19_I19350	-	Uroporphyrinogen decarboxylase (URO-D)
1856	 55.71	0	2009257..2010096	+	279	189025124	-	BAbS19_I19360	-	Protein of unknown function DUF299
1857	 54.67	0	2010093..2010692	+	199	189025125	-	BAbS19_I19370	-	Maf-like protein
1858	 58.39	0	2010685..2011554	+	289	189025126	-	BAbS19_I19380	-	shikimate 5-dehydrogenase
1859	 57.21	0	2011551..2012153	+	200	189025127	-	BAbS19_I19390	-	Dephospho-CoA kinase
1860	 57.73	0	2012195..2012899	+	234	189025128	-	BAbS19_I19400	-	DNA polymerase III, epsilon subunit
1861	 56.91	0	2012957..2013448	-	163	189025129	-	BAbS19_I19410	-	Bacterial protein export chaperone SecB
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.