IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1720	 53.96	-1	1867249..1867791	-	180	189024988	-	BAbS19_I18000	-	hypothetical protein
1721	 55.56	0	1867862..1868500	-	212	189024989	-	BAbS19_I18010	-	Lysine exporter protein (LYSE/YGGA)
1722	 59.66	0	1868542..1868955	-	137	189024990	-	BAbS19_I18020	-	hypothetical protein
1723	 61.45	+1	1868965..1870191	-	408	189024991	-	BAbS19_I18030	-	dihydrolipoamide acetyltransferase
1724	 59.34	0	1870253..1873267	-	1004	189024992	-	BAbS19_I18040	-	Dehydrogenase
1725	 58.77	0	1873422..1873535	+	37	189024993	-	BAbS19_I18050	-	hypothetical protein
1726	 60.58	0	1873545..1874447	-	300	189024994	-	BAbS19_I18060	-	Succinyl-CoA ligase
1727	 57.64	0	1874451..1875647	-	398	189024995	-	BAbS19_I18070	-	succinyl-CoA synthetase subunit beta
1728	 61.37	+1	1875754..1876716	-	320	189024996	-	BAbS19_I18080	-	Lactate/malate dehydrogenase
1729	 57.82	0	1877184..1878347	-	387	189024997	-	BAbS19_I18090	-	ATP/GTP-binding site motif A (P-loop)
1730	 63.48	+1	1878467..1879000	-	177	189024998	-	BAbS19_I18100	-	lipoprotein Omp19
1731	 50.98	-1	1879130..1879282	-	50	189024999	-	BAbS19_I18110	-	hypothetical protein
1732	 63.27	+1	1879364..1880275	+	303	189025000	-	BAbS19_I18120	-	Diaminopimelate epimerase
1733	 60.12	0	1880275..1881558	+	427	189025001	-	BAbS19_I18130	-	elongator protein 3
1734	 60.87	0	1881580..1882977	+	465	189025002	-	BAbS19_I18140	-	cell division protein FtsY
1735	 56.26	0	1882977..1883639	+	220	189025003	-	BAbS19_I18150	-	ATP/GTP-binding site motif A (P-loop)
1736	 58.24	0	1883663..1884445	+	260	189025004	-	BAbS19_I18160	-	Beta-lactamase-like protein
1737	 56.14	0	1884758..1884985	+	75	189025005	-	BAbS19_I18170	-	hypothetical protein
1738	 56.21	0	1885050..1885355	-	101	189025006	-	BAbS19_I18180	-	hypothetical protein
1739	 59.71	0	1885468..1885884	-	138	189025007	-	BAbS19_I18190	-	NUDIX hydrolase
1740	 60.15	0	1885881..1886540	-	219	189025008	-	BAbS19_I18200	-	GCN5-related N-acetyltransferase
1741	 60.95	0	1886730..1887971	-	413	189025009	-	BAbS19_I18210	-	Arginine biosynthesis protein ArgJ
1742	 52.78	-1	1888205..1888348	-	47	189025010	-	BAbS19_I18220	-	hypothetical protein
1743	 58.03	0	1888409..1889404	-	331	189025011	-	BAbS19_I18230	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1744	 58.58	0	1889743..1892463	+	906	189025012	-	BAbS19_I18240	-	SecA protein
1745	 46.10	-2	1892491..1892631	+	46	189025013	-	BAbS19_I18250	-	hypothetical protein
1746	 59.05	0	1892973..1894259	+	428	189025014	-	BAbS19_I18260	-	hypothetical protein
1747	 55.67	0	1894428..1895336	+	302	189025015	-	BAbS19_I18270	-	Integral membrane protein
1748	 55.69	0	1895336..1896073	+	245	189025016	-	BAbS19_I18280	-	Integral membrane protein
1749	 46.08	-2	1896401..1896502	+	33	189025017	-	BAbS19_I18290	-	hypothetical protein
1750	 59.04	0	1897216..1898199	-	327	189025018	-	BAbS19_I18300	-	Bacterial regulatory protein LysR, HTH motif
1751	 42.47	-2	1898239..1898424	-	61	189025019	-	BAbS19_I18310	-	hypothetical protein
1752	 58.04	0	1898490..1899335	+	281	189025020	-	BAbS19_I18320	-	Bacterial extracellular solute-binding protein, family 3
1753	 59.61	0	1899867..1900121	+	84	189025021	-	BAbS19_I18330	-	Asparagine transport system permease protein
1754	 58.09	0	1900126..1900848	+	240	189025022	-	BAbS19_I18340	-	Binding-protein-dependent transport systems inner membrane component
1755	 59.68	0	1900845..1901660	+	271	189025023	-	BAbS19_I18350	-	ATP/GTP-binding site motif A (P-loop)
1756	 60.26	0	1901681..1902694	+	337	189025024	-	BAbS19_I18360	-	Arginase/agmatinase/formiminoglutamase
1757	 58.40	0	1902703..1904154	+	483	189025025	-	BAbS19_I18370	-	Fumarate lyase
1758	 57.41	0	1904138..1904893	+	251	189025026	-	BAbS19_I18380	-	ATP/GTP-binding site motif A (P-loop)
1759	 58.86	0	1904902..1905900	+	332	189025027	-	BAbS19_I18390	-	Asparaginase/glutaminase
1760	 51.90	-1	1906037..1906720	-	227	189025028	-	BAbS19_I18400	-	Bacterial regulatory protein, AsnC family
1761	 56.04	0	1906698..1907732	-	344	189025029	-	BAbS19_I18410	-	Asparaginase/glutaminase
1762	 54.13	0	1907810..1909117	+	435	189025030	-	BAbS19_I18420	-	Glucarate transporter
1763	 56.21	0	1909604..1909756	-	50	189025031	-	BAbS19_I18430	-	hypothetical protein
1764	 58.96	0	1909803..1911086	-	427	189025032	-	BAbS19_I18440	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
1765	 57.78	0	1911266..1911715	-	149	189025033	-	BAbS19_I18450	-	Universal stress protein (Usp)
1766	 57.14	0	1911962..1912423	+	153	189025034	-	BAbS19_I18460	-	ATP/GTP-binding site motif A (P-loop)
1767	 58.11	0	1912386..1912946	+	186	189025035	-	BAbS19_I18470	-	Cysteine synthase A
1768	 57.31	0	1913437..1914312	-	291	189025036	-	BAbS19_I18480	-	3-hydroxybutyryl-CoA dehydrogenase
1769	 60.65	0	1914785..1915714	-	309	189025037	-	BAbS19_I18490	-	Antifreeze protein, type I
1770	 58.10	0	1915867..1916613	-	248	189025038	-	BAbS19_I18500	-	Electron transfer flavoprotein beta-subunit
1771	 59.37	0	1916949..1917647	+	232	189025039	-	BAbS19_I18510	-	ExsB protein
1772	 56.28	0	1917647..1918012	+	121	189025040	-	BAbS19_I18520	-	6-pyruvoyl tetrahydropterin synthase and hypothetical protein
1773	 57.66	0	1918213..1918767	+	184	189025041	-	BAbS19_I18530	-	Proline-rich extensin
1774	 60.71	0	1918904..1919491	-	195	189025042	-	BAbS19_I18540	-	Protein of unknown function DUF80
1775	 54.90	0	1919493..1919696	-	67	189025043	-	BAbS19_I18550	-	hypothetical protein
1776	 60.02	0	1919726..1920568	-	280	189025044	-	BAbS19_I18560	-	Short-chain dehydrogenase/reductase SDR
1777	 56.68	0	1920726..1921586	+	286	189025045	-	BAbS19_I18570	-	Ribonuclease BN
1778	 60.70	0	1921604..1922089	+	161	189025046	-	BAbS19_I18580	-	Protein of unknown function DUF188
1779	 58.72	0	1922097..1922813	-	238	189025047	-	BAbS19_I18590	-	Sodium:dicarboxylate symporter
1780	 59.53	0	1922867..1924267	+	466	189025048	-	BAbS19_I18600	-	Fumarate lyase
1781	 58.20	0	1924372..1924560	+	62	189025049	-	BAbS19_I18610	-	hypothetical protein
1782	 61.06	0	1924588..1925853	+	421	189025050	-	BAbS19_I18620	-	diaminopimelate decarboxylase
1783	 61.07	0	1925952..1928612	+	886	189025051	-	BAbS19_I18630	-	hypothetical protein
1784	 55.68	0	1928652..1929188	-	178	189025052	-	BAbS19_I18640	-	Phosphoribosyltransferase
1785	 62.95	+1	1929337..1930116	+	259	189025053	-	BAbS19_I18650	-	Generic methyltransferase
1786	 59.17	0	1930261..1931367	+	368	189025054	-	BAbS19_I18660	-	histidinol-phosphate aminotransferase
1787	 60.66	0	1931372..1932337	+	321	189025055	-	BAbS19_I18670	-	Prephenate dehydrogenase
1788	 57.75	0	1932306..1933325	-	339	189025056	-	BAbS19_I18680	-	hypothetical protein
1789	 57.93	0	1933537..1934097	+	186	189025057	-	BAbS19_I18690	-	ChaC-like protein
1790	 53.26	-1	1934430..1934720	+	96	189025058	-	BAbS19_I18700	-	Family of unknown function YGGT
1791	 55.18	0	1934891..1935421	-	176	189025059	-	BAbS19_I18710	-	Inorganic pyrophosphatase
1792	 59.58	0	1935574..1936293	-	239	189025060	-	BAbS19_I18720	-	Mercuric reductase
1793	 54.49	0	1936535..1937437	-	300	189025061	-	BAbS19_I18730	-	hypothetical protein
1794	 60.88	0	1937434..1938435	-	333	189025062	-	BAbS19_I18740	-	hypothetical protein
1795	 60.15	0	1938428..1939087	-	219	189025063	-	BAbS19_I18750	-	ATP/GTP-binding site motif A (P-loop)
1796	 54.58	0	1939396..1939668	-	90	189025064	-	BAbS19_I18760	-	hypothetical protein
1797	 58.52	0	1940146..1940832	+	228	189025065	-	BAbS19_I18770	-	Aromatic amino acid permease
1798	 54.89	0	1941213..1941908	+	231	189025066	-	BAbS19_I18780	-	hypothetical protein
1799	 57.24	0	1941948..1942817	+	289	189025067	-	BAbS19_I18790	-	Exodeoxyribonuclease III
1800	 61.90	+1	1942823..1943284	-	153	189025068	-	BAbS19_I18800	-	cAMP-dependent protein kinase
1801	 55.99	0	1943319..1944002	-	227	189025069	-	BAbS19_I18810	-	Transcriptional regulatory protein
1802	 61.17	0	1944210..1944755	+	181	189025070	-	BAbS19_I18820	-	Hypothetical Cytosolic Protein
1803	 44.79	-2	1945506..1946648	-	380	189025071	-	BAbS19_I18830	-	intimin/invasin family protein
1804	 43.33	-2	1946657..1947736	-	359	189025072	-	BAbS19_I18840	-	Glyceraldehyde 3-phosphate dehydrogenase
1805	 43.42	-2	1948539..1950095	-	518	189025073	-	BAbS19_I18850	-	hypothetical protein
1806	 51.16	-1	1950733..1952964	+	743	189025074	-	BAbS19_I18860	-	outer membrane autotransporter
1807	 51.67	-1	1953196..1955055	+	619	189025075	-	BAbS19_I18870	-	outer membrane autotransporter
1808	 58.63	0	1955196..1955867	-	223	189025076	-	BAbS19_I18880	-	Protein of unknown function DUF165
1809	 59.52	0	1955947..1956240	-	97	189025077	-	BAbS19_I18890	-	Ribosomal protein L28
1810	 55.16	0	1956566..1957417	+	283	189025078	-	BAbS19_I18900	-	hypothetical protein
1811	 58.87	0	1957529..1957951	-	140	189025079	-	BAbS19_I18910	-	Bacterial regulatory protein, MerR family
1812	 60.61	0	1958028..1960454	+	808	189025080	-	BAbS19_I18920	-	CadA-1, cadmium-translocating P-type ATPase
1813	 44.54	-2	1960933..1961610	+	225	189025081	-	BAbS19_I18930	-	hypothetical protein
1814	 41.25	-2	1961637..1962722	+	361	189025082	-	BAbS19_I18940	-	hypothetical protein
1815	 61.60	+1	1962895..1964808	-	637	189025083	-	BAbS19_I18950	-	Von Willebrand factor, type A
1816	 57.75	0	1964882..1965868	-	328	189025084	-	BAbS19_I18960	-	Chaperonin clpA/B
1817	 56.83	0	1966143..1966772	-	209	189025085	-	BAbS19_I18970	-	Heat shock protein DnaJ, N-terminal
1818	 57.78	0	1966959..1967273	+	104	189025086	-	BAbS19_I18980	-	Basic helix-loop-helix dimerization domain bHLH
1819	 59.40	0	1967298..1968605	-	435	189025087	-	BAbS19_I18990	-	CBS domain:CBS:Transporter associated domain protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.