IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1668	 58.86	0	1813271..1814704	-	477	189024936	-	BAbS19_I17480	-	ErfK/YbiS/YcfS/YnhG
1669	 58.78	0	1815171..1817795	-	874	189024937	-	BAbS19_I17490	-	ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
1670	 62.85	+1	1817994..1818779	-	261	189024938	-	BAbS19_I17500	-	hypothetical protein
1671	 58.11	0	1819197..1820084	-	295	189024939	-	BAbS19_I17510	-	Methyltransferase
1672	 60.09	0	1820081..1821160	-	359	189024940	-	BAbS19_I17520	-	Class I peptide chain release factor domain protein
1673	 60.37	0	1821357..1823627	-	756	189024941	-	BAbS19_I17530	-	PEP-utilizing enzyme
1674	 59.28	0	1823955..1825226	-	423	189024942	-	BAbS19_I17540	-	aspartate kinase
1675	 59.97	0	1825444..1826190	+	248	189024943	-	BAbS19_I17550	-	SAM (and some other nucleotide) binding motif
1676	 59.18	0	1826140..1827087	-	315	189024944	-	BAbS19_I17560	-	Transporter, DME family
1677	 55.87	0	1827115..1827540	-	141	189024945	-	BAbS19_I17570	-	hypothetical protein
1678	 59.77	0	1827546..1828400	-	284	189024946	-	BAbS19_I17580	-	nitrilase/cyanide hydratase/apolipoprotein N-acyltransferase
1679	 56.55	0	1828411..1828677	-	88	189024948	-	BAbS19_I17590	-	glutaredoxin 3
1680	 45.00	-2	1828664..1828783	+	39	189024947	-	BAbS19_I17600	-	hypothetical protein
1681	 61.72	+1	1828761..1829549	-	262	189024949	-	BAbS19_I17610	-	competence protein F
1682	 62.53	+1	1829732..1830625	+	297	189024950	-	BAbS19_I17620	-	hypothetical protein
1683	 59.89	0	1830764..1832002	+	412	189024951	-	BAbS19_I17630	-	hypothetical protein BruAb1_1858
1684	 63.41	+1	1832028..1832150	-	40	189024952	-	BAbS19_I17640	-	Hypothetical Cytosolic Protein
1685	 51.11	-1	1832328..1832507	-	59	189024953	-	BAbS19_I17650	-	Hypothetical Cytosolic Protein
1686	 62.09	+1	1832923..1834494	-	523	189024954	-	BAbS19_I17660	-	hypothetical protein
1687	 62.09	+1	1834507..1835883	-	458	189024955	-	BAbS19_I17670	-	hypothetical protein
1688	 58.76	0	1835966..1836673	-	235	189024956	-	BAbS19_I17680	-	Uroporphyrinogen III synthase HEM4
1689	 62.65	+1	1836697..1837641	-	314	189024957	-	BAbS19_I17690	-	Porphobilinogen deaminase
1690	 63.52	+1	1837760..1838839	+	359	189024958	-	BAbS19_I17700	-	Glycoprotease (M22) metalloprotease
1691	 62.49	+1	1838836..1839816	+	326	189024959	-	BAbS19_I17710	-	Adrenodoxin reductase
1692	 60.48	0	1839818..1840108	+	96	189024960	-	BAbS19_I17720	-	YCII-related domain protein
1693	 58.04	0	1840121..1840549	+	142	189024961	-	BAbS19_I17730	-	Family of unknown function DUF589
1694	 58.90	0	1840549..1841205	+	218	189024962	-	BAbS19_I17740	-	SAM (and some other nucleotide) binding motif
1695	 61.54	+1	1841251..1842108	-	285	189024963	-	BAbS19_I17750	-	Protein of unknown function DUF6
1696	 61.91	+1	1842224..1843717	+	497	189024964	-	BAbS19_I17760	-	Bacterial regulatory protein, GntR family
1697	 61.17	0	1843779..1846343	-	854	189024965	-	BAbS19_I17770	-	cell division protein FtsK, putative
1698	 58.99	0	1846553..1847854	-	433	189024966	-	BAbS19_I17780	-	Ammonium transporter
1699	 59.22	0	1848077..1849030	-	317	189024967	-	BAbS19_I17790	-	Acyl-CoA thioesterase
1700	 62.41	+1	1849199..1850443	+	414	189024968	-	BAbS19_I17800	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1701	 56.18	0	1850529..1850900	-	123	189024969	-	BAbS19_I17810	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
1702	 57.05	0	1851269..1852048	-	259	189024970	-	BAbS19_I17820	-	succinate dehydrogenase catalytic subunit
1703	 61.73	+1	1852064..1853905	-	613	189024971	-	BAbS19_I17830	-	succinate dehydrogenase
1704	 54.29	0	1853913..1854308	-	131	189024972	-	BAbS19_I17840	-	succinate dehydrogenase
1705	 59.40	0	1854322..1854885	-	187	189024973	-	BAbS19_I17850	-	Succinate dehydrogenase
1706	 57.08	0	1855065..1855523	-	152	189024974	-	BAbS19_I17860	-	GCN5-related N-acetyltransferase
1707	 60.43	0	1855780..1857189	-	469	189024975	-	BAbS19_I17870	-	Aconitate hydratase
1708	 58.68	0	1857400..1857837	-	145	189024976	-	BAbS19_I17880	-	Ribosomal protein L19
1709	 57.24	0	1858361..1859590	+	409	189024977	-	BAbS19_I17890	-	putative allantoin permease
1710	 60.32	0	1859743..1859994	-	83	189024978	-	BAbS19_I17900	-	Hypothetical Membrane Spanning Protein
1711	 59.12	0	1859991..1860401	-	136	189024979	-	BAbS19_I17910	-	hypothetical protein
1712	 59.23	0	1860394..1860756	-	120	189024980	-	BAbS19_I17920	-	Antibiotic biosynthesis monooxygenase
1713	 55.26	0	1860753..1861094	-	113	189024981	-	BAbS19_I17930	-	hypothetical protein
1714	 59.16	0	1861147..1861812	+	221	189024982	-	BAbS19_I17940	-	Bacterial regulatory protein LysR
1715	 61.50	+1	1861947..1862681	-	244	189024983	-	BAbS19_I17950	-	tRNA (guanine-N1-)-methyltransferase
1716	 58.07	0	1862678..1863247	-	189	189024984	-	BAbS19_I17960	-	RimM protein
1717	 62.76	+1	1863471..1864418	+	315	189024985	-	BAbS19_I17970	-	Phage integrase
1718	 56.49	0	1864472..1865473	+	333	189024986	-	BAbS19_I17980	-	hypothetical protein
1719	 58.40	0	1865677..1867080	-	467	189024987	-	BAbS19_I17990	-	dihydrolipoamide dehydrogenase
1720	 53.96	-1	1867249..1867791	-	180	189024988	-	BAbS19_I18000	-	hypothetical protein
1721	 55.56	0	1867862..1868500	-	212	189024989	-	BAbS19_I18010	-	Lysine exporter protein (LYSE/YGGA)
1722	 59.66	0	1868542..1868955	-	137	189024990	-	BAbS19_I18020	-	hypothetical protein
1723	 61.45	+1	1868965..1870191	-	408	189024991	-	BAbS19_I18030	-	dihydrolipoamide acetyltransferase
1724	 59.34	0	1870253..1873267	-	1004	189024992	-	BAbS19_I18040	-	Dehydrogenase
1725	 58.77	0	1873422..1873535	+	37	189024993	-	BAbS19_I18050	-	hypothetical protein
1726	 60.58	0	1873545..1874447	-	300	189024994	-	BAbS19_I18060	-	Succinyl-CoA ligase
1727	 57.64	0	1874451..1875647	-	398	189024995	-	BAbS19_I18070	-	succinyl-CoA synthetase subunit beta
1728	 61.37	+1	1875754..1876716	-	320	189024996	-	BAbS19_I18080	-	Lactate/malate dehydrogenase
1729	 57.82	0	1877184..1878347	-	387	189024997	-	BAbS19_I18090	-	ATP/GTP-binding site motif A (P-loop)
1730	 63.48	+1	1878467..1879000	-	177	189024998	-	BAbS19_I18100	-	lipoprotein Omp19
1731	 50.98	-1	1879130..1879282	-	50	189024999	-	BAbS19_I18110	-	hypothetical protein
1732	 63.27	+1	1879364..1880275	+	303	189025000	-	BAbS19_I18120	-	Diaminopimelate epimerase
1733	 60.12	0	1880275..1881558	+	427	189025001	-	BAbS19_I18130	-	elongator protein 3
1734	 60.87	0	1881580..1882977	+	465	189025002	-	BAbS19_I18140	-	cell division protein FtsY
1735	 56.26	0	1882977..1883639	+	220	189025003	-	BAbS19_I18150	-	ATP/GTP-binding site motif A (P-loop)
1736	 58.24	0	1883663..1884445	+	260	189025004	-	BAbS19_I18160	-	Beta-lactamase-like protein
1737	 56.14	0	1884758..1884985	+	75	189025005	-	BAbS19_I18170	-	hypothetical protein
1738	 56.21	0	1885050..1885355	-	101	189025006	-	BAbS19_I18180	-	hypothetical protein
1739	 59.71	0	1885468..1885884	-	138	189025007	-	BAbS19_I18190	-	NUDIX hydrolase
1740	 60.15	0	1885881..1886540	-	219	189025008	-	BAbS19_I18200	-	GCN5-related N-acetyltransferase
1741	 60.95	0	1886730..1887971	-	413	189025009	-	BAbS19_I18210	-	Arginine biosynthesis protein ArgJ
1742	 52.78	-1	1888205..1888348	-	47	189025010	-	BAbS19_I18220	-	hypothetical protein
1743	 58.03	0	1888409..1889404	-	331	189025011	-	BAbS19_I18230	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1744	 58.58	0	1889743..1892463	+	906	189025012	-	BAbS19_I18240	-	SecA protein
1745	 46.10	-2	1892491..1892631	+	46	189025013	-	BAbS19_I18250	-	hypothetical protein
1746	 59.05	0	1892973..1894259	+	428	189025014	-	BAbS19_I18260	-	hypothetical protein
1747	 55.67	0	1894428..1895336	+	302	189025015	-	BAbS19_I18270	-	Integral membrane protein
1748	 55.69	0	1895336..1896073	+	245	189025016	-	BAbS19_I18280	-	Integral membrane protein
1749	 46.08	-2	1896401..1896502	+	33	189025017	-	BAbS19_I18290	-	hypothetical protein
1750	 59.04	0	1897216..1898199	-	327	189025018	-	BAbS19_I18300	-	Bacterial regulatory protein LysR, HTH motif
1751	 42.47	-2	1898239..1898424	-	61	189025019	-	BAbS19_I18310	-	hypothetical protein
1752	 58.04	0	1898490..1899335	+	281	189025020	-	BAbS19_I18320	-	Bacterial extracellular solute-binding protein, family 3
1753	 59.61	0	1899867..1900121	+	84	189025021	-	BAbS19_I18330	-	Asparagine transport system permease protein
1754	 58.09	0	1900126..1900848	+	240	189025022	-	BAbS19_I18340	-	Binding-protein-dependent transport systems inner membrane component
1755	 59.68	0	1900845..1901660	+	271	189025023	-	BAbS19_I18350	-	ATP/GTP-binding site motif A (P-loop)
1756	 60.26	0	1901681..1902694	+	337	189025024	-	BAbS19_I18360	-	Arginase/agmatinase/formiminoglutamase
1757	 58.40	0	1902703..1904154	+	483	189025025	-	BAbS19_I18370	-	Fumarate lyase
1758	 57.41	0	1904138..1904893	+	251	189025026	-	BAbS19_I18380	-	ATP/GTP-binding site motif A (P-loop)
1759	 58.86	0	1904902..1905900	+	332	189025027	-	BAbS19_I18390	-	Asparaginase/glutaminase
1760	 51.90	-1	1906037..1906720	-	227	189025028	-	BAbS19_I18400	-	Bacterial regulatory protein, AsnC family
1761	 56.04	0	1906698..1907732	-	344	189025029	-	BAbS19_I18410	-	Asparaginase/glutaminase
1762	 54.13	0	1907810..1909117	+	435	189025030	-	BAbS19_I18420	-	Glucarate transporter
1763	 56.21	0	1909604..1909756	-	50	189025031	-	BAbS19_I18430	-	hypothetical protein
1764	 58.96	0	1909803..1911086	-	427	189025032	-	BAbS19_I18440	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
1765	 57.78	0	1911266..1911715	-	149	189025033	-	BAbS19_I18450	-	Universal stress protein (Usp)
1766	 57.14	0	1911962..1912423	+	153	189025034	-	BAbS19_I18460	-	ATP/GTP-binding site motif A (P-loop)
1767	 58.11	0	1912386..1912946	+	186	189025035	-	BAbS19_I18470	-	Cysteine synthase A
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.