IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1579	 48.04	-2	1711470..1711673	-	67	189024847	-	BAbS19_I16590	-	hypothetical protein
1580	 55.38	0	1711651..1712226	-	191	189024848	-	BAbS19_I16600	-	Transcription factor CarD
1581	 55.75	0	1712740..1713078	-	112	189024849	-	BAbS19_I16610	-	7Fe ferredoxin
1582	 50.94	-1	1713211..1713369	-	52	189024850	-	BAbS19_I16620	-	hypothetical protein
1583	 61.94	+1	1713441..1713842	-	133	189024851	-	BAbS19_I16630	-	RNA-binding S4
1584	 61.58	+1	1713878..1716964	-	1028	189024852	-	BAbS19_I16640	-	ATP-dependent helicase
1585	 62.03	+1	1717637..1718821	-	394	189024854	-	BAbS19_I16650	-	Thiolase
1586	 48.48	-2	1718802..1718966	+	54	189024853	-	BAbS19_I16660	-	hypothetical protein
1587	 62.04	+1	1718997..1719428	+	143	189024855	-	BAbS19_I16670	-	Domain of unknown function DUF336
1588	 54.44	0	1719560..1719739	-	59	189024856	-	BAbS19_I16680	-	Ribosomal L32p protein
1589	 56.39	0	1719900..1720697	-	265	189024857	-	BAbS19_I16690	-	Glycosyl transferase, family 51
1590	 63.44	+1	1720869..1721735	+	288	189024858	-	BAbS19_I16700	-	Polyprenyl synthetase
1591	 60.17	0	1721743..1723005	-	420	189024859	-	BAbS19_I16710	-	IspG protein
1592	 57.20	0	1723173..1723964	+	263	189024860	-	BAbS19_I16720	-	hypothetical D-beta-hydroxybutyrate dehydrogenase
1593	 58.76	0	1723982..1725106	-	374	189024861	-	BAbS19_I16730	-	membrane protein MosC
1594	 58.79	0	1725235..1728711	-	1158	189024862	-	BAbS19_I16740	-	Pyc, pyruvate carboxylase
1595	 56.36	0	1728977..1730092	-	371	189024863	-	BAbS19_I16750	-	Leu/Ile/Val-binding protein family
1596	 55.11	0	1730713..1731828	-	371	189024864	-	BAbS19_I16760	-	Leu/Ile/Val-binding protein family
1597	 54.20	0	1731980..1732324	-	114	189024865	-	BAbS19_I16770	-	hypothetical protein
1598	 57.43	0	1732334..1733080	-	248	189024866	-	BAbS19_I16780	-	ATP/GTP-binding site motif A (P-loop
1599	 58.30	0	1733070..1734419	-	449	189024867	-	BAbS19_I16790	-	High-affinity branched-chain amino acid transport atp-binding protein BRAF
1600	 57.97	0	1734419..1735798	-	459	189024868	-	BAbS19_I16800	-	Bacterial inner-membrane translocator
1601	 57.25	0	1735801..1736724	-	307	189024869	-	BAbS19_I16810	-	High-affinity branched-chain amino acid transport system permease protein LIVH
1602	 58.98	0	1737003..1738004	-	333	189024870	-	BAbS19_I16820	-	proline racemase, putative
1603	 60.41	0	1738010..1739272	-	420	189024871	-	BAbS19_I16830	-	TrkA potassium uptake protein
1604	 63.22	+1	1739552..1740247	+	231	189024872	-	BAbS19_I16840	-	Bacterial regulatory protein, GntR family
1605	 57.31	0	1740320..1740757	-	145	189024873	-	BAbS19_I16850	-	Bacterial regulatory protein, MarR family
1606	 49.02	-2	1740918..1741019	-	33	189024874	-	BAbS19_I16860	-	hypothetical protein
1607	 57.84	0	1741100..1741507	-	135	189024875	-	BAbS19_I16870	-	H+-transporting two-sector ATPase, delta/epsilon subunit
1608	 61.62	+1	1741632..1743197	-	521	189024876	-	BAbS19_I16880	-	ATP synthase subunit B
1609	 56.66	0	1743325..1744203	-	292	189024877	-	BAbS19_I16890	-	H+-transporting two-sector ATPase, gamma subunit
1610	 59.61	0	1744225..1745754	-	509	189024878	-	BAbS19_I16900	-	ATP synthase subunit A
1611	 58.29	0	1745754..1746314	-	186	189024879	-	BAbS19_I16910	-	H+-transporting two-sector ATPase, delta (OSCP) subunit
1612	 58.94	0	1746596..1747009	-	137	189024880	-	BAbS19_I16920	-	hypothetical protein
1613	 62.72	+1	1747076..1749277	-	733	189024881	-	BAbS19_I16930	-	DEAD/DEAH box helicase
1614	 56.57	0	1749420..1750073	+	217	189024882	-	BAbS19_I16940	-	Transaldolase C
1615	 59.11	0	1750217..1750798	-	193	189024883	-	BAbS19_I16950	-	hypothetical protein
1616	 59.15	0	1750785..1753418	-	877	189024884	-	BAbS19_I16960	-	Aminoacyl-tRNA synthetase, class I
1617	 61.38	+1	1753541..1754221	+	226	189024885	-	BAbS19_I16970	-	hypothetical protein
1618	 56.87	0	1754234..1754764	-	176	189024886	-	BAbS19_I16980	-	fusaric acid resistance protein FusB / fusaric acid resistance protein FusC
1619	 54.17	0	1754835..1755122	-	95	189024887	-	BAbS19_I16990	-	usg protein, putative
1620	 59.25	0	1755463..1757418	+	651	189024888	-	BAbS19_I17000	-	AMP-dependent synthetase and ligase
1621	 60.73	0	1757574..1757792	-	72	189024889	-	BAbS19_I17010	-	hypothetical protein
1622	 60.33	0	1757924..1758901	+	325	189024890	-	BAbS19_I17020	-	heat shock protein HtpX
1623	 62.80	+1	1758917..1760314	+	465	189024891	-	BAbS19_I17030	-	Sun
1624	 61.68	+1	1760435..1762177	+	580	189024892	-	BAbS19_I17040	-	Hypothetical Cytosolic Protein
1625	 61.47	+1	1762284..1763900	+	538	189024893	-	BAbS19_I17050	-	AICARFT/IMPCHase bienzyme
1626	 55.28	0	1763950..1764072	-	40	189024894	-	BAbS19_I17060	-	Transporter
1627	 58.35	0	1764166..1765332	-	388	189024895	-	BAbS19_I17070	-	Transporter
1628	 59.71	0	1765537..1769979	-	1480	189024896	-	BAbS19_I17080	-	ATP/GTP-binding site motif A (P-loop)
1629	 58.10	0	1770604..1771245	-	213	189024897	-	BAbS19_I17090	-	hypothetical protein
1630	 58.90	0	1771258..1772094	-	278	189024898	-	BAbS19_I17100	-	Protein of unknown function DUF477
1631	 55.93	0	1772106..1772729	-	207	189024899	-	BAbS19_I17110	-	LemA family
1632	 50.35	-2	1772726..1772866	-	46	189024900	-	BAbS19_I17120	-	hypothetical protein
1633	 62.22	+1	1772999..1773403	-	134	189024901	-	BAbS19_I17130	-	Antifreeze protein, type I
1634	 58.41	0	1773470..1773784	-	104	189024902	-	BAbS19_I17140	-	Chorismate mutase
1635	 60.18	0	1773790..1775361	-	523	189024903	-	BAbS19_I17150	-	Ffh, signal recognition particle protein
1636	 59.90	0	1775796..1776623	+	275	189024904	-	BAbS19_I17160	-	lytic murein transglycosylase, putative
1637	 55.30	0	1776687..1777328	-	213	189024905	-	BAbS19_I17170	-	Carbonic anhydrase
1638	 61.87	+1	1777502..1778398	-	298	189024906	-	BAbS19_I17180	-	Pyridoxal kinase
1639	 60.31	0	1778400..1778792	-	130	189024907	-	BAbS19_I17190	-	hypothetical protein
1640	 60.32	0	1779060..1780556	-	498	189024908	-	BAbS19_I17200	-	ATP/GTP-binding site motif A (P-loop)
1641	 61.92	+1	1780663..1781589	+	308	189024909	-	BAbS19_I17210	-	Transcriptional regulatory protein, LYSR family
1642	 60.16	0	1781905..1782549	-	214	189024910	-	BAbS19_I17220	-	hypothetical protein
1643	 58.82	0	1782617..1782871	-	84	189024911	-	BAbS19_I17230	-	Transglycosylase-associated protein
1644	 60.15	0	1782987..1783523	-	178	189024912	-	BAbS19_I17240	-	NUDIX hydrolase
1645	 58.92	0	1783741..1785069	-	442	189024913	-	BAbS19_I17250	-	carboxyl-terminal protease
1646	 59.48	0	1785059..1786408	-	449	189024914	-	BAbS19_I17260	-	Peptidase M23/M37
1647	 57.11	0	1786521..1787420	-	299	189024915	-	BAbS19_I17270	-	hypothetical protein
1648	 62.75	+1	1787538..1788047	-	169	189024916	-	BAbS19_I17280	-	Protein of unknown function DUF163
1649	 56.99	0	1788066..1788437	-	123	189024917	-	BAbS19_I17290	-	iojap-related protein
1650	 59.11	0	1788600..1789274	-	224	189024918	-	BAbS19_I17300	-	nicotinic acid mononucleotide adenyltransferase
1651	 61.14	0	1789274..1790557	-	427	189024919	-	BAbS19_I17310	-	gamma-glutamyl phosphate reductase
1652	 60.16	0	1790567..1791703	-	378	189024920	-	BAbS19_I17320	-	gamma-glutamyl kinase
1653	 59.36	0	1791731..1792756	-	341	189024921	-	BAbS19_I17330	-	GTP-binding protein, GTP1/OBG family
1654	 51.55	-1	1793012..1793785	-	257	189024922	-	BAbS19_I17340	-	hypothetical protein
1655	 57.17	0	1794127..1794684	-	185	189024923	-	BAbS19_I17350	-	GCN5-related N-acetyltransferase
1656	 57.60	0	1794738..1795388	-	216	189024924	-	BAbS19_I17360	-	GCN5-related N-acetyltransferase
1657	 57.78	0	1795509..1795778	-	89	189024925	-	BAbS19_I17370	-	Regulator of chromosome condensation, RCC1
1658	 61.07	0	1795804..1796232	-	142	189024926	-	BAbS19_I17380	-	Ribosomal protein L21
1659	 49.77	-2	1796753..1797628	+	291	189024927	-	BAbS19_I17390	-	Transposase
1660	 52.74	-1	1797845..1799797	+	650	189024928	-	BAbS19_I17400	-	transcriptional regulator, Cro/CI family
1661	 51.85	-1	1799794..1800468	+	224	189024929	-	BAbS19_I17410	-	AzlC protein
1662	 47.75	-2	1800883..1800993	+	36	189024930	-	BAbS19_I17420	-	Transposase
1663	 48.03	-2	1801026..1801712	-	228	189024931	-	BAbS19_I17430	-	transposase, putative
1664	 50.35	-2	1801823..1803262	-	479	189024932	-	BAbS19_I17440	-	hypothetical protein
1665	 50.22	-2	1803438..1804112	-	224	189024933	-	BAbS19_I17450	-	hypothetical protein
1666	 45.10	-2	1804984..1805136	+	50	189024934	-	BAbS19_I17460	-	hypothetical protein
1667	 59.00	0	1811248..1813203	+	651	189024935	-	BAbS19_I17470	-	Peptidase M23/M37
1668	 58.86	0	1813271..1814704	-	477	189024936	-	BAbS19_I17480	-	ErfK/YbiS/YcfS/YnhG
1669	 58.78	0	1815171..1817795	-	874	189024937	-	BAbS19_I17490	-	ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB
1670	 62.85	+1	1817994..1818779	-	261	189024938	-	BAbS19_I17500	-	hypothetical protein
1671	 58.11	0	1819197..1820084	-	295	189024939	-	BAbS19_I17510	-	Methyltransferase
1672	 60.09	0	1820081..1821160	-	359	189024940	-	BAbS19_I17520	-	Class I peptide chain release factor domain protein
1673	 60.37	0	1821357..1823627	-	756	189024941	-	BAbS19_I17530	-	PEP-utilizing enzyme
1674	 59.28	0	1823955..1825226	-	423	189024942	-	BAbS19_I17540	-	aspartate kinase
1675	 59.97	0	1825444..1826190	+	248	189024943	-	BAbS19_I17550	-	SAM (and some other nucleotide) binding motif
1676	 59.18	0	1826140..1827087	-	315	189024944	-	BAbS19_I17560	-	Transporter, DME family
1677	 55.87	0	1827115..1827540	-	141	189024945	-	BAbS19_I17570	-	hypothetical protein
1678	 59.77	0	1827546..1828400	-	284	189024946	-	BAbS19_I17580	-	nitrilase/cyanide hydratase/apolipoprotein N-acyltransferase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.