IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1521	 54.97	0	1658857..1659309	-	150	189024789	-	BAbS19_I15990	-	Biopolymer transport protein ExbD/TolR
1522	 59.07	0	1659356..1660066	-	236	189024790	-	BAbS19_I16000	-	MotA/TolQ/ExbB proton channel
1523	 56.44	0	1660441..1660890	-	149	189024791	-	BAbS19_I16010	-	hypothetical protein
1524	 61.58	+1	1660887..1661927	-	346	189024792	-	BAbS19_I16020	-	Holliday junction DNA helicase RuvB
1525	 61.33	+1	1661968..1662585	-	205	189024793	-	BAbS19_I16030	-	Bacterial DNA recombination protein, RuvA
1526	 59.77	0	1662590..1663111	-	173	189024794	-	BAbS19_I16040	-	Crossover junction endodeoxyribonuclease RuvC
1527	 59.31	0	1663213..1663905	-	230	189024795	-	BAbS19_I16050	-	hypothetical protein
1528	 58.35	0	1664206..1665408	-	400	189024796	-	BAbS19_I16060	-	OPGC
1529	 61.71	+1	1665632..1666297	+	221	189024797	-	BAbS19_I16070	-	thiamine-phosphate pyrophosphorylase, putative
1530	 62.01	+1	1666334..1667386	+	350	189024798	-	BAbS19_I16080	-	Sel1-like repeat
1531	 56.51	0	1667651..1668211	+	186	189024799	-	BAbS19_I16090	-	Elongation factor P (EF-P)
1532	 61.74	+1	1668397..1669188	+	263	189024800	-	BAbS19_I16100	-	Inositol phosphatase/fructose-1,6-bisphosphatase
1533	 42.34	-2	1669193..1669303	+	36	189024801	-	BAbS19_I16110	-	hypothetical protein
1534	 60.86	0	1669443..1670492	+	349	189024802	-	BAbS19_I16120	-	hypothetical protein
1535	 59.59	0	1670499..1671530	+	343	189024803	-	BAbS19_I16130	-	OmpA/MotB domain protein
1536	 59.48	0	1671564..1673609	-	681	189024804	-	BAbS19_I16140	-	Probable transport atp-binding protein MSBA
1537	 59.01	0	1673679..1673900	+	73	189024805	-	BAbS19_I16150	-	Ribosomal protein L31
1538	 57.30	0	1674128..1674874	-	248	189024806	-	BAbS19_I16160	-	Protein of unknown function DUF28
1539	 64.07	+1	1675095..1675787	+	230	189024807	-	BAbS19_I16170	-	Bacterial regulatory protein, GntR family
1540	 62.67	+1	1675949..1676524	+	191	189024808	-	BAbS19_I16180	-	BioY protein
1541	 59.21	0	1676535..1676963	+	142	189024809	-	BAbS19_I16190	-	2Fe-2S ferredoxin, iron-sulfur binding protein
1542	 56.32	0	1676976..1677719	-	247	189024810	-	BAbS19_I16200	-	RNA-binding region RNP-1 (RNA recognition motif)
1543	 58.79	0	1677930..1678754	-	274	189024811	-	BAbS19_I16210	-	Metallo-phosphoesterase
1544	 62.14	+1	1678863..1679459	-	198	189024812	-	BAbS19_I16220	-	5-formyltetrahydrofolate cyclo-ligase
1545	 59.02	0	1679847..1680212	-	121	189024813	-	BAbS19_I16230	-	Protein of unknown function DUF710
1546	 57.18	0	1680222..1680653	-	143	189024814	-	BAbS19_I16240	-	hypothetical protein
1547	 60.14	0	1680911..1682902	+	663	189024815	-	BAbS19_I16250	-	transketolase
1548	 58.53	0	1683043..1684050	+	335	189024816	-	BAbS19_I16260	-	glyceraldehyde-3-phosphate dehydrogenase
1549	 60.29	0	1684118..1685308	+	396	189024817	-	BAbS19_I16270	-	phosphoglycerate kinase
1550	 56.97	0	1685599..1685763	-	54	189024818	-	BAbS19_I16280	-	hypothetical protein
1551	 60.54	0	1686037..1687947	+	636	189024819	-	BAbS19_I16290	-	AMP-dependent synthetase and ligase
1552	 58.25	0	1687877..1688185	+	102	189024820	-	BAbS19_I16300	-	Glucose/ribitol dehydrogenase
1553	 54.30	0	1688331..1688516	+	61	189024821	-	BAbS19_I16310	-	hypothetical protein
1554	 61.25	+1	1688523..1689224	+	233	189024822	-	BAbS19_I16320	-	Bacterial regulatory protein, DeoR family
1555	 39.81	-2	1689477..1689584	-	35	189024823	-	BAbS19_I16330	-	hypothetical protein
1556	 61.03	0	1689627..1690034	+	135	189024824	-	BAbS19_I16340	-	Phenylacetic acid degradation-related protein
1557	 59.13	0	1690112..1690801	-	229	189024825	-	BAbS19_I16350	-	hypothetical protein
1558	 61.59	+1	1690929..1691933	-	334	189024826	-	BAbS19_I16360	-	alcohol dehydrogenase, zinc-containing
1559	 56.77	0	1692126..1692317	+	63	189024827	-	BAbS19_I16370	-	hypothetical protein
1560	 48.33	-2	1693795..1693974	-	59	189024828	-	BAbS19_I16400	-	Protein of unknown function DUF465
1561	 49.51	-2	1694368..1694571	+	67	189024829	-	BAbS19_I16410	-	Protein of unknown function DUF465
1562	 62.78	+1	1694669..1695157	+	162	189024830	-	BAbS19_I16420	-	1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxyl ate (AIR) carboxylase
1563	 60.06	0	1695174..1696262	+	362	189024831	-	BAbS19_I16430	-	phosphoribosylaminoimidazole carboxylase
1564	 57.94	0	1696498..1696623	+	41	189024832	-	BAbS19_I16440	-	Ribosomal protein L36
1565	 57.67	0	1696673..1697350	+	225	189024833	-	BAbS19_I16450	-	TPR repeat-containing protein
1566	 59.22	0	1697602..1699038	-	478	189024834	-	BAbS19_I16460	-	ATP/GTP-binding site motif A (P-loop)
1567	 53.46	-1	1699035..1699496	-	153	189024835	-	BAbS19_I16470	-	hypothetical protein
1568	 59.22	0	1699737..1700555	+	272	189024836	-	BAbS19_I16480	-	N-formylglutamate amidohydrolase
1569	 50.19	-2	1700728..1700988	+	86	189024837	-	BAbS19_I16490	-	Hypothetical Cytosolic Protein
1570	 59.74	0	1701080..1702897	-	605	189024838	-	BAbS19_I16500	-	ABC transporter, ATP-binding protein
1571	 60.35	0	1703045..1703329	-	94	189024839	-	BAbS19_I16510	-	lipoprotein, putative
1572	 56.16	0	1703463..1704119	-	218	189024840	-	BAbS19_I16520	-	Thiamin pyrophosphokinase, catalytic domain protein
1573	 55.82	0	1704426..1705430	+	334	189024841	-	BAbS19_I16530	-	ThiB, thiamine-binding periplasmic binding protein
1574	 60.74	0	1705406..1707058	+	550	189024842	-	BAbS19_I16540	-	thiamin ABC transporter membrane component
1575	 60.19	0	1707055..1707780	+	241	189024843	-	BAbS19_I16550	-	hypothetical thiamine ABC transporter, ATP-binding protein
1576	 61.34	+1	1708047..1709528	+	493	189024844	-	BAbS19_I16560	-	Peptidase family M48
1577	 57.75	0	1709555..1710283	+	242	189024845	-	BAbS19_I16570	-	MOSC domain protein
1578	 58.85	0	1710371..1711291	-	306	189024846	-	BAbS19_I16580	-	Sigma-70 factor family
1579	 48.04	-2	1711470..1711673	-	67	189024847	-	BAbS19_I16590	-	hypothetical protein
1580	 55.38	0	1711651..1712226	-	191	189024848	-	BAbS19_I16600	-	Transcription factor CarD
1581	 55.75	0	1712740..1713078	-	112	189024849	-	BAbS19_I16610	-	7Fe ferredoxin
1582	 50.94	-1	1713211..1713369	-	52	189024850	-	BAbS19_I16620	-	hypothetical protein
1583	 61.94	+1	1713441..1713842	-	133	189024851	-	BAbS19_I16630	-	RNA-binding S4
1584	 61.58	+1	1713878..1716964	-	1028	189024852	-	BAbS19_I16640	-	ATP-dependent helicase
1585	 62.03	+1	1717637..1718821	-	394	189024854	-	BAbS19_I16650	-	Thiolase
1586	 48.48	-2	1718802..1718966	+	54	189024853	-	BAbS19_I16660	-	hypothetical protein
1587	 62.04	+1	1718997..1719428	+	143	189024855	-	BAbS19_I16670	-	Domain of unknown function DUF336
1588	 54.44	0	1719560..1719739	-	59	189024856	-	BAbS19_I16680	-	Ribosomal L32p protein
1589	 56.39	0	1719900..1720697	-	265	189024857	-	BAbS19_I16690	-	Glycosyl transferase, family 51
1590	 63.44	+1	1720869..1721735	+	288	189024858	-	BAbS19_I16700	-	Polyprenyl synthetase
1591	 60.17	0	1721743..1723005	-	420	189024859	-	BAbS19_I16710	-	IspG protein
1592	 57.20	0	1723173..1723964	+	263	189024860	-	BAbS19_I16720	-	hypothetical D-beta-hydroxybutyrate dehydrogenase
1593	 58.76	0	1723982..1725106	-	374	189024861	-	BAbS19_I16730	-	membrane protein MosC
1594	 58.79	0	1725235..1728711	-	1158	189024862	-	BAbS19_I16740	-	Pyc, pyruvate carboxylase
1595	 56.36	0	1728977..1730092	-	371	189024863	-	BAbS19_I16750	-	Leu/Ile/Val-binding protein family
1596	 55.11	0	1730713..1731828	-	371	189024864	-	BAbS19_I16760	-	Leu/Ile/Val-binding protein family
1597	 54.20	0	1731980..1732324	-	114	189024865	-	BAbS19_I16770	-	hypothetical protein
1598	 57.43	0	1732334..1733080	-	248	189024866	-	BAbS19_I16780	-	ATP/GTP-binding site motif A (P-loop
1599	 58.30	0	1733070..1734419	-	449	189024867	-	BAbS19_I16790	-	High-affinity branched-chain amino acid transport atp-binding protein BRAF
1600	 57.97	0	1734419..1735798	-	459	189024868	-	BAbS19_I16800	-	Bacterial inner-membrane translocator
1601	 57.25	0	1735801..1736724	-	307	189024869	-	BAbS19_I16810	-	High-affinity branched-chain amino acid transport system permease protein LIVH
1602	 58.98	0	1737003..1738004	-	333	189024870	-	BAbS19_I16820	-	proline racemase, putative
1603	 60.41	0	1738010..1739272	-	420	189024871	-	BAbS19_I16830	-	TrkA potassium uptake protein
1604	 63.22	+1	1739552..1740247	+	231	189024872	-	BAbS19_I16840	-	Bacterial regulatory protein, GntR family
1605	 57.31	0	1740320..1740757	-	145	189024873	-	BAbS19_I16850	-	Bacterial regulatory protein, MarR family
1606	 49.02	-2	1740918..1741019	-	33	189024874	-	BAbS19_I16860	-	hypothetical protein
1607	 57.84	0	1741100..1741507	-	135	189024875	-	BAbS19_I16870	-	H+-transporting two-sector ATPase, delta/epsilon subunit
1608	 61.62	+1	1741632..1743197	-	521	189024876	-	BAbS19_I16880	-	ATP synthase subunit B
1609	 56.66	0	1743325..1744203	-	292	189024877	-	BAbS19_I16890	-	H+-transporting two-sector ATPase, gamma subunit
1610	 59.61	0	1744225..1745754	-	509	189024878	-	BAbS19_I16900	-	ATP synthase subunit A
1611	 58.29	0	1745754..1746314	-	186	189024879	-	BAbS19_I16910	-	H+-transporting two-sector ATPase, delta (OSCP) subunit
1612	 58.94	0	1746596..1747009	-	137	189024880	-	BAbS19_I16920	-	hypothetical protein
1613	 62.72	+1	1747076..1749277	-	733	189024881	-	BAbS19_I16930	-	DEAD/DEAH box helicase
1614	 56.57	0	1749420..1750073	+	217	189024882	-	BAbS19_I16940	-	Transaldolase C
1615	 59.11	0	1750217..1750798	-	193	189024883	-	BAbS19_I16950	-	hypothetical protein
1616	 59.15	0	1750785..1753418	-	877	189024884	-	BAbS19_I16960	-	Aminoacyl-tRNA synthetase, class I
1617	 61.38	+1	1753541..1754221	+	226	189024885	-	BAbS19_I16970	-	hypothetical protein
1618	 56.87	0	1754234..1754764	-	176	189024886	-	BAbS19_I16980	-	fusaric acid resistance protein FusB / fusaric acid resistance protein FusC
1619	 54.17	0	1754835..1755122	-	95	189024887	-	BAbS19_I16990	-	usg protein, putative
1620	 59.25	0	1755463..1757418	+	651	189024888	-	BAbS19_I17000	-	AMP-dependent synthetase and ligase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.