IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
104	 59.60	0	126769..127575	-	268	189023372	-	BAbS19_I01080	-	Short-chain dehydrogenase/reductase SDR
105	 60.12	0	127696..129987	-	763	189023373	-	BAbS19_I01090	-	penicillin-binding protein, 1A family
106	 56.13	0	130193..130885	-	230	189023374	-	BAbS19_I01100	-	outer membrane protein, putative
107	 56.19	0	131152..131838	-	228	189023375	-	BAbS19_I01110	-	outer membrane protein, putative
108	 56.31	0	132070..132687	-	205	189023376	-	BAbS19_I01120	-	3'-5' exonuclease
109	 59.46	0	132726..134141	-	471	189023377	-	BAbS19_I01130	-	Peptidase M20/M25/M40
110	 59.35	0	134702..137638	+	978	189023378	-	BAbS19_I01140	-	DNA polymerase I
111	 60.29	0	137780..139660	+	626	189023379	-	BAbS19_I01150	-	ATP-dependent RNA helicase, DEAD/DEAH box family
112	 59.83	0	139756..142197	-	813	189023380	-	BAbS19_I01160	-	DNA gyrase subunit B
113	 47.41	-2	142248..142382	-	44	189023381	-	BAbS19_I01170	-	hypothetical protein
114	 57.95	0	142516..143352	-	278	189023382	-	BAbS19_I01180	-	S-formylglutathione hydrolase
115	 56.62	0	144015..144482	-	155	189023383	-	BAbS19_I01210	-	GCN5-related N-acetyltransferase
116	 60.92	0	144482..145594	-	370	189023384	-	BAbS19_I01220	-	glutathione-dependent formaldehyde dehydrogenase
117	 59.39	0	145628..145888	-	86	189023385	-	BAbS19_I01230	-	Protein of unknown function DUF156
118	 64.94	+2	146040..147896	+	618	189023386	-	BAbS19_I01240	-	ATP-dependent helicase HRPB
119	 60.94	0	148589..149881	+	430	189023387	-	BAbS19_I01250	-	sensor histidine kinase
120	 58.27	0	149951..150319	+	122	189023388	-	BAbS19_I01260	-	Transposase
121	 49.08	-2	150436..150708	+	90	189023389	-	BAbS19_I01270	-	Transposase, IS4
122	 60.46	0	151308..151871	+	187	189023390	-	BAbS19_I01280	-	Response regulator receiver
123	 63.43	+1	151877..152371	-	164	189023391	-	BAbS19_I01290	-	hypothetical protein
124	 57.33	0	152641..153261	+	206	189023392	-	BAbS19_I01300	-	ErfK/YbiS/YcfS/YnhG
125	 59.69	0	153351..153923	-	190	189023393	-	BAbS19_I01310	-	Nitrogen-fixing NifU, C-terminal
126	 60.93	0	154032..154571	-	179	189023394	-	BAbS19_I01320	-	Hypothetical Cytosolic Protein
127	 59.83	0	154578..155645	-	355	189023395	-	BAbS19_I01330	-	tryptophanyl-tRNA synthetase
128	 60.10	0	155742..157325	-	527	189023396	-	BAbS19_I01340	-	Virulence factor MVIN-like protein
129	 58.54	0	157345..160149	-	934	189023397	-	BAbS19_I01350	-	PII uridylyl-transferase
130	 61.52	+1	160292..161185	-	297	189023398	-	BAbS19_I01360	-	NADP-dependent malic enzyme
131	 61.46	+1	161185..162585	-	466	189023399	-	BAbS19_I01370	-	NADP-dependent malic enzyme
132	 60.37	0	162742..165474	+	910	189023400	-	BAbS19_I01380	-	DNA mismatch repair protein
133	 58.50	0	165780..166673	-	297	189023401	-	BAbS19_I01390	-	hypothetical protein
134	 52.80	-1	166948..167430	-	160	189023402	-	BAbS19_I01400	-	Signal peptidase II, family A8
135	 59.96	0	167432..168325	-	297	189023403	-	BAbS19_I01410	-	tRNA/rRNA methyltransferase (SpoU)
136	 58.95	0	169579..169902	-	107	189023404	-	BAbS19_I01440	-	hypothetical protein
137	 56.84	0	169912..170196	-	94	189023405	-	BAbS19_I01450	-	Histone-like bacterial DNA-binding protein
138	 60.16	0	170243..171226	-	327	189023406	-	BAbS19_I01460	-	Clp protease
139	 56.02	0	171688..172410	+	240	189023407	-	BAbS19_I01470	-	hypothetical protein
140	 60.27	0	172692..173348	+	218	189023408	-	BAbS19_I01480	-	OstA-like protein
141	 60.16	0	173456..174193	+	245	189023409	-	BAbS19_I01490	-	ATP/GTP-binding site motif A (P-loop)
142	 57.75	0	174489..175991	+	500	189023410	-	BAbS19_I01500	-	Sigma-54 factor family
143	 58.75	0	176741..177334	+	197	189023411	-	BAbS19_I01510	-	Sigma 54 modulation protein/ribosomal protein S30EA
144	 58.49	0	177437..177901	+	154	189023412	-	BAbS19_I01520	-	nitrogen regulatory IIA protein
145	 58.54	0	177982..178227	-	81	189023413	-	BAbS19_I01530	-	hypothetical protein
146	 56.26	0	178333..178755	-	140	189023414	-	BAbS19_I01540	-	Heat shock protein Hsp20
147	 50.70	-1	178846..179058	-	70	189023415	-	BAbS19_I01550	-	hypothetical protein
148	 58.63	0	179027..179524	-	165	189023416	-	BAbS19_I01560	-	hypothetical protein
149	 60.51	0	179629..180375	+	248	189023417	-	BAbS19_I01570	-	Nth, endonuclease III
150	 58.40	0	180416..181129	-	237	189023418	-	BAbS19_I01580	-	Sodium:dicarboxylate symporter, DUF540
151	 59.92	0	181389..182381	+	330	189023419	-	BAbS19_I01590	-	Carbohydrate kinase, PfkB
152	 59.82	0	182400..183056	-	218	189023420	-	BAbS19_I01600	-	hypothetical protein
153	 59.18	0	183189..183869	-	226	189023421	-	BAbS19_I01610	-	GrpE protein
154	 59.76	0	183975..185045	-	356	189023422	-	BAbS19_I01620	-	Negative regulator of class I heat shock protein
155	 62.76	+1	185267..185983	+	238	189023423	-	BAbS19_I01630	-	Ribonuclease PH
156	 58.62	0	186157..186330	+	57	189023424	-	BAbS19_I01640	-	Lactoylglutathione lyase, putative
157	 57.21	0	186339..186560	+	73	189023425	-	BAbS19_I01650	-	Lactoylglutathione lyase, putative
158	 59.58	0	186563..187225	+	220	189023426	-	BAbS19_I01660	-	Ham1-like protein
159	 60.41	0	187222..188436	+	404	189023427	-	BAbS19_I01670	-	coproporphyrinogen III oxidase
160	 62.28	+1	188448..189359	+	303	189023428	-	BAbS19_I01680	-	tetrapyrrole methylase family protein
161	 61.42	+1	189356..189736	+	126	189023429	-	BAbS19_I01690	-	hypothetical protein
162	 64.15	+1	189962..191389	+	475	189023430	-	BAbS19_I01700	-	CysG, siroheme synthase
163	 62.71	+1	191407..191709	+	100	189023431	-	BAbS19_I01710	-	hypothetical protein
164	 57.51	0	191730..193400	+	556	189023432	-	BAbS19_I01720	-	sulfite reductase (NADPH) hemoprotein beta-component
165	 63.37	+1	193390..194148	+	252	189023433	-	BAbS19_I01730	-	Phosphoadenosine phosphosulfate reductase CysH-type
166	 59.24	0	194201..194725	+	174	189023434	-	BAbS19_I01740	-	hypothetical protein
167	 53.40	-1	194793..195086	+	97	189023435	-	BAbS19_I01750	-	hypothetical protein
168	 59.41	0	195087..195665	-	192	189023436	-	BAbS19_I01760	-	Methylated-DNA-[protein]-cysteine S-methyltransferase
169	 56.91	0	195923..196168	+	81	189023437	-	BAbS19_I01770	-	hypothetical protein
170	 57.85	0	196221..196787	-	188	189023438	-	BAbS19_I01780	-	hypothetical protein
171	 59.24	0	196924..200709	+	1261	189023439	-	BAbS19_I01790	-	MetH, 5-methyltetrahydrofolate--homocysteine methyltransferase
172	 51.32	-1	201021..201737	+	238	189023440	-	BAbS19_I01800	-	Transcriptional activator, LUXR family
173	 59.52	0	201852..203222	+	456	189023441	-	BAbS19_I01810	-	Aminotransferase class-III
174	 55.70	0	203607..204527	+	306	189023442	-	BAbS19_I01820	-	sulfate adenylyltransferase subunit 2
175	 58.14	0	204527..206461	+	644	189023443	-	BAbS19_I01830	-	binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
176	 61.35	+1	206464..207309	+	281	189023444	-	BAbS19_I01840	-	CYSQ protein
177	 55.76	0	207571..208377	-	268	189023445	-	BAbS19_I01850	-	transcriptional regulator, Crp/Fnr family
178	 57.32	0	208575..209312	+	245	189023446	-	BAbS19_I01860	-	Bacterial regulatory protein, LuxR family
179	 58.33	0	209640..210431	+	263	189023447	-	BAbS19_I01870	-	Bacterial regulatory protein, DeoR family
180	 60.38	0	210513..212024	+	503	189023448	-	BAbS19_I01880	-	FAD-dependent glycerol-3-phosphate dehydrogenase
181	 64.81	+1	212243..213211	+	322	189023449	-	BAbS19_I01890	-	Helix-turn-helix, Fis-type
182	 59.03	0	215357..216391	+	344	189023450	-	BAbS19_I01920	-	Zinc-containing alcohol dehydrogenase
183	 59.82	0	216413..216850	+	145	189023451	-	BAbS19_I01930	-	hypothetical protein
184	 59.82	0	216876..217898	+	340	189023452	-	BAbS19_I01940	-	transcriptional regulator LacI family
185	 59.21	0	220410..221843	+	477	189023453	-	BAbS19_I01980	-	Aldehyde dehydrogenase
186	 63.19	+1	221888..222664	-	258	189023454	-	BAbS19_I01990	-	ABC transporter, permease protein
187	 58.94	0	222661..223359	-	232	189023455	-	BAbS19_I02000	-	TENA/THI-4 protein
188	 57.38	0	223356..224324	-	322	189023456	-	BAbS19_I02010	-	ABC transporter, periplasmic substrate-binding protein
189	 60.95	0	224348..224959	-	203	189023457	-	BAbS19_I02020	-	Thiamine monophosphate synthase
190	 62.65	+1	224956..225726	-	256	189023458	-	BAbS19_I02030	-	FMN/related compound-binding core
191	 59.09	0	225728..225925	-	65	189023459	-	BAbS19_I02040	-	thiamineS protein
192	 63.38	+1	225922..226926	-	334	189023460	-	BAbS19_I02050	-	D-amino acid oxidase family protein
193	 62.67	+1	226926..227801	-	291	189023461	-	BAbS19_I02060	-	Phosphomethylpyrimidine kinase
194	 57.72	0	228230..230341	+	703	189023462	-	BAbS19_I02070	-	PAS-associated C-terminal domain protein
195	 62.11	+1	230440..232719	+	759	189023463	-	BAbS19_I02080	-	copper-translocating P-type ATPase
196	 58.67	0	232699..233148	-	149	189023464	-	BAbS19_I02090	-	Bacterial regulatory protein, MerR family
197	 61.31	+1	233254..234000	-	248	189023465	-	BAbS19_I02100	-	ABC transporter, permease protein
198	 63.58	+1	233997..234935	-	312	189023466	-	BAbS19_I02110	-	ATP/GTP-binding site motif A (P-loop)
199	 62.29	+1	234932..236143	-	403	189023467	-	BAbS19_I02120	-	Binding-protein-dependent transport systems inner membrane component
200	 56.45	0	236165..237094	-	309	189023468	-	BAbS19_I02130	-	Substrate-binding region of ABC-type glycine betaine transport system
201	 45.62	-2	237265..237915	-	216	189023469	-	BAbS19_I02140	-	hypothetical protein
202	 60.82	0	238219..239484	-	421	189023470	-	BAbS19_I02150	-	glutamate dehydrogenase, hypothetical
203	 59.65	0	239811..241064	+	417	189023471	-	BAbS19_I02160	-	Pyridine nucleotide-disulphide oxidoreductase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.