IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1453	 59.51	0	1580520..1581287	+	255	189024721	-	BAbS19_I15270	-	Short-chain dehydrogenase/reductase SDR
1454	 57.11	0	1581353..1582147	+	264	189024722	-	BAbS19_I15280	-	Short-chain dehydrogenase/reductase SDR
1455	 57.72	0	1583930..1584544	+	204	189024723	-	BAbS19_I15310	-	Multiple antibiotic resistance protein MARC
1456	 54.59	0	1584847..1585608	+	253	189024724	-	BAbS19_I15320	-	OmpA-like transmembrane domain protein
1457	 54.16	0	1585745..1587175	-	476	189024725	-	BAbS19_I15330	-	Patatin
1458	 47.06	-2	1587596..1587697	-	33	189024726	-	BAbS19_I15340	-	hypothetical protein
1459	 49.65	-2	1587847..1588128	+	93	189024727	-	BAbS19_I15350	-	hypothetical protein
1460	 56.33	0	1588405..1589052	-	215	189024728	-	BAbS19_I15360	-	dihydroxyacetone kinase family
1461	 57.48	0	1591360..1592001	-	213	189024729	-	BAbS19_I15390	-	Dihydroxyacetone kinase
1462	 57.10	0	1592013..1593005	-	330	189024730	-	BAbS19_I15400	-	Dihydroxyacetone kinase
1463	 55.68	0	1593038..1593811	-	257	189024731	-	BAbS19_I15410	-	Short-chain dehydrogenase/reductase SDR
1464	 55.25	0	1593900..1594889	-	329	189024732	-	BAbS19_I15420	-	Periplasmic binding protein/LacI transcriptional regulator
1465	 57.31	0	1595065..1596069	-	334	189024733	-	BAbS19_I15430	-	Bacterial inner-membrane translocator
1466	 55.85	0	1596165..1597643	-	492	189024734	-	BAbS19_I15440	-	RbsA-2, ribose ABC transporter, ATP-binding protein
1467	 53.46	-1	1597939..1598256	+	105	189024735	-	BAbS19_I15450	-	hypothetical protein
1468	 52.71	-1	1598386..1598514	-	42	189024736	-	BAbS19_I15460	-	hypothetical protein
1469	 56.52	0	1598658..1600274	+	538	189024737	-	BAbS19_I15470	-	Glucose-methanol-choline oxidoreductase
1470	 45.10	-2	1600923..1601075	+	50	189024738	-	BAbS19_I15480	-	hypothetical protein
1471	 58.88	0	1606974..1607795	-	273	189024739	-	BAbS19_I15490	-	Bacterial regulatory protein, IclR family
1472	 58.82	0	1607913..1609364	+	483	189024740	-	BAbS19_I15500	-	Aldehyde dehydrogenase
1473	 56.87	0	1609388..1610071	+	227	189024741	-	BAbS19_I15510	-	hypothetical protein
1474	 57.80	0	1610184..1610702	+	172	189024742	-	BAbS19_I15520	-	Basic helix-loop-helix dimerization domain bHLH
1475	 56.54	0	1610719..1611291	-	190	189024743	-	BAbS19_I15530	-	HNH endonuclease
1476	 63.66	+1	1611565..1612263	-	232	189024744	-	BAbS19_I15540	-	HhH-GPD
1477	 58.56	0	1612285..1613160	+	291	189024745	-	BAbS19_I15550	-	Glutamyl-tRNA synthetase, class Ic
1478	 58.34	0	1613303..1615489	+	728	189024746	-	BAbS19_I15560	-	Malate synthase
1479	 55.83	0	1615680..1616288	+	202	189024747	-	BAbS19_I15570	-	GCN5-related N-acetyltransferase
1480	 58.44	0	1616347..1617258	-	303	189024748	-	BAbS19_I15580	-	Sigma-70 factor family
1481	 59.70	0	1617689..1618693	-	334	189024749	-	BAbS19_I15590	-	ribosomal large subunit pseudouridine synthase, RluD subfamily
1482	 58.28	0	1618749..1619225	+	158	189024750	-	BAbS19_I15600	-	hypothetical protein
1483	 51.73	-1	1619481..1620029	+	182	189024751	-	BAbS19_I15610	-	Ferric uptake regulation protein
1484	 56.65	0	1620265..1621272	-	335	189024752	-	BAbS19_I15620	-	Sensory transduction histidine kinase
1485	 48.48	-2	1621468..1621632	-	54	189024753	-	BAbS19_I15630	-	hypothetical protein
1486	 56.23	0	1621782..1622576	-	264	189024754	-	BAbS19_I15640	-	Response regulator receiver
1487	 60.56	0	1623023..1623595	+	190	189024755	-	BAbS19_I15650	-	Sigma factor, ECF subfamily
1488	 56.96	0	1623796..1625238	+	480	189024756	-	BAbS19_I15660	-	sensor histidine kinase
1489	 57.87	0	1625299..1625730	-	143	189024757	-	BAbS19_I15670	-	hypothetical protein
1490	 57.63	0	1625739..1626092	-	117	189024758	-	BAbS19_I15680	-	DNA gyrase, subunit B
1491	 57.30	0	1626257..1627099	-	280	189024759	-	BAbS19_I15690	-	hypothetical protein
1492	 57.86	0	1627272..1627430	-	52	189024760	-	BAbS19_I15700	-	hypothetical protein
1493	 63.64	+1	1627880..1628803	+	307	189024761	-	BAbS19_I15710	-	MotA/TolQ/ExbB proton channel
1494	 60.20	0	1628809..1629303	+	164	189024762	-	BAbS19_I15720	-	Biopolymer transport protein ExbD/TolR
1495	 61.74	+1	1629300..1630151	+	283	189024763	-	BAbS19_I15730	-	TonB-dependent receptor
1496	 54.88	0	1630194..1630838	-	214	189024764	-	BAbS19_I15740	-	hypothetical protein
1497	 58.93	0	1630984..1631784	-	266	189024765	-	BAbS19_I15750	-	Protein of unknown function DUF214
1498	 59.92	0	1631793..1632770	-	325	189024766	-	BAbS19_I15760	-	ATP/GTP-binding site motif A (P-loop)
1499	 58.92	0	1632938..1634164	-	408	189024767	-	BAbS19_I15770	-	Secretion protein HlyD
1500	 61.18	0	1634399..1634872	-	157	189024768	-	BAbS19_I15780	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1501	 56.48	0	1635095..1635565	-	156	189024769	-	BAbS19_I15790	-	Bacterial regulatory protein, AsnC family
1502	 53.24	-1	1635711..1635926	+	71	189024770	-	BAbS19_I15800	-	hypothetical protein
1503	 60.66	0	1636014..1636829	+	271	189024771	-	BAbS19_I15810	-	Glutamine amidotransferase, class-II
1504	 59.35	0	1636856..1637839	-	327	189024772	-	BAbS19_I15820	-	hypothetical protein
1505	 59.87	0	1638034..1639386	+	450	189024773	-	BAbS19_I15830	-	Thromboxane receptor
1506	 60.52	0	1639596..1640993	-	465	189024774	-	BAbS19_I15840	-	Basic-leucine zipper (bZIP) transcription factor
1507	 54.63	0	1641191..1641298	-	35	189024775	-	BAbS19_I15850	-	hypothetical protein
1508	 59.25	0	1641306..1642868	-	520	189024776	-	BAbS19_I15860	-	adenylosuccinate synthetase
1509	 56.11	0	1642913..1643452	-	179	189024777	-	BAbS19_I15870	-	GCN5-related N-acetyltransferase
1510	 57.37	0	1643427..1645028	-	533	189024778	-	BAbS19_I15880	-	SerA-1, D-3-phosphoglycerate dehydrogenase
1511	 58.67	0	1645171..1646346	-	391	189024779	-	BAbS19_I15890	-	Phosphoserine aminotransferase
1512	 59.14	0	1646497..1647453	-	318	189024780	-	BAbS19_I15900	-	Bile acid:sodium symporter
1513	 56.00	0	1647634..1648458	-	274	189024781	-	BAbS19_I15910	-	heat resistant agglutinin 1 precursor
1514	 58.12	0	1648643..1650022	-	459	189024782	-	BAbS19_I15920	-	Phosphoglucosamine mutase
1515	 58.24	0	1650303..1652237	-	644	189024783	-	BAbS19_I15930	-	FtsH, cell division protein FtsH
1516	 61.10	0	1652373..1653719	-	448	189024784	-	BAbS19_I15940	-	hypothetical protein
1517	 60.00	0	1653735..1655189	-	484	189024785	-	BAbS19_I15950	-	TPR repeat-containing protein
1518	 62.52	+1	1655598..1656104	-	168	189024786	-	BAbS19_I15960	-	Bacterial outer membrane protein
1519	 59.08	0	1656392..1657723	-	443	189024787	-	BAbS19_I15970	-	TolB, N-terminal
1520	 61.09	0	1657779..1658675	-	298	189024788	-	BAbS19_I15980	-	Proline-rich extensin
1521	 54.97	0	1658857..1659309	-	150	189024789	-	BAbS19_I15990	-	Biopolymer transport protein ExbD/TolR
1522	 59.07	0	1659356..1660066	-	236	189024790	-	BAbS19_I16000	-	MotA/TolQ/ExbB proton channel
1523	 56.44	0	1660441..1660890	-	149	189024791	-	BAbS19_I16010	-	hypothetical protein
1524	 61.58	+1	1660887..1661927	-	346	189024792	-	BAbS19_I16020	-	Holliday junction DNA helicase RuvB
1525	 61.33	+1	1661968..1662585	-	205	189024793	-	BAbS19_I16030	-	Bacterial DNA recombination protein, RuvA
1526	 59.77	0	1662590..1663111	-	173	189024794	-	BAbS19_I16040	-	Crossover junction endodeoxyribonuclease RuvC
1527	 59.31	0	1663213..1663905	-	230	189024795	-	BAbS19_I16050	-	hypothetical protein
1528	 58.35	0	1664206..1665408	-	400	189024796	-	BAbS19_I16060	-	OPGC
1529	 61.71	+1	1665632..1666297	+	221	189024797	-	BAbS19_I16070	-	thiamine-phosphate pyrophosphorylase, putative
1530	 62.01	+1	1666334..1667386	+	350	189024798	-	BAbS19_I16080	-	Sel1-like repeat
1531	 56.51	0	1667651..1668211	+	186	189024799	-	BAbS19_I16090	-	Elongation factor P (EF-P)
1532	 61.74	+1	1668397..1669188	+	263	189024800	-	BAbS19_I16100	-	Inositol phosphatase/fructose-1,6-bisphosphatase
1533	 42.34	-2	1669193..1669303	+	36	189024801	-	BAbS19_I16110	-	hypothetical protein
1534	 60.86	0	1669443..1670492	+	349	189024802	-	BAbS19_I16120	-	hypothetical protein
1535	 59.59	0	1670499..1671530	+	343	189024803	-	BAbS19_I16130	-	OmpA/MotB domain protein
1536	 59.48	0	1671564..1673609	-	681	189024804	-	BAbS19_I16140	-	Probable transport atp-binding protein MSBA
1537	 59.01	0	1673679..1673900	+	73	189024805	-	BAbS19_I16150	-	Ribosomal protein L31
1538	 57.30	0	1674128..1674874	-	248	189024806	-	BAbS19_I16160	-	Protein of unknown function DUF28
1539	 64.07	+1	1675095..1675787	+	230	189024807	-	BAbS19_I16170	-	Bacterial regulatory protein, GntR family
1540	 62.67	+1	1675949..1676524	+	191	189024808	-	BAbS19_I16180	-	BioY protein
1541	 59.21	0	1676535..1676963	+	142	189024809	-	BAbS19_I16190	-	2Fe-2S ferredoxin, iron-sulfur binding protein
1542	 56.32	0	1676976..1677719	-	247	189024810	-	BAbS19_I16200	-	RNA-binding region RNP-1 (RNA recognition motif)
1543	 58.79	0	1677930..1678754	-	274	189024811	-	BAbS19_I16210	-	Metallo-phosphoesterase
1544	 62.14	+1	1678863..1679459	-	198	189024812	-	BAbS19_I16220	-	5-formyltetrahydrofolate cyclo-ligase
1545	 59.02	0	1679847..1680212	-	121	189024813	-	BAbS19_I16230	-	Protein of unknown function DUF710
1546	 57.18	0	1680222..1680653	-	143	189024814	-	BAbS19_I16240	-	hypothetical protein
1547	 60.14	0	1680911..1682902	+	663	189024815	-	BAbS19_I16250	-	transketolase
1548	 58.53	0	1683043..1684050	+	335	189024816	-	BAbS19_I16260	-	glyceraldehyde-3-phosphate dehydrogenase
1549	 60.29	0	1684118..1685308	+	396	189024817	-	BAbS19_I16270	-	phosphoglycerate kinase
1550	 56.97	0	1685599..1685763	-	54	189024818	-	BAbS19_I16280	-	hypothetical protein
1551	 60.54	0	1686037..1687947	+	636	189024819	-	BAbS19_I16290	-	AMP-dependent synthetase and ligase
1552	 58.25	0	1687877..1688185	+	102	189024820	-	BAbS19_I16300	-	Glucose/ribitol dehydrogenase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.