IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1407	 56.81	0	1528763..1529746	+	327	189024675	-	BAbS19_I14760	-	Glutathione S-transferase, C-terminal
1408	 56.29	0	1529894..1530577	+	227	189024676	-	BAbS19_I14770	-	OmpW family
1409	 53.51	-1	1530611..1531066	-	151	189024677	-	BAbS19_I14780	-	NUDIX hydrolase
1410	 59.76	0	1531166..1532077	+	303	189024678	-	BAbS19_I14790	-	putative phosphohydrolase, Icc family
1411	 57.41	0	1532278..1534005	-	575	189024679	-	BAbS19_I14800	-	HMG-CoA lyase-like protein
1412	 58.53	0	1534310..1535218	-	302	189024680	-	BAbS19_I14810	-	cation efflux family protein
1413	 46.10	-2	1535228..1535509	+	93	189024681	-	BAbS19_I14820	-	hypothetical protein
1414	 58.33	0	1535688..1537883	-	731	189024683	-	BAbS19_I14830	-	Glutamine amidotransferase class-I
1415	 52.91	-1	1537882..1538070	+	62	189024682	-	BAbS19_I14840	-	hypothetical protein
1416	 55.19	0	1538562..1539023	+	153	189024684	-	BAbS19_I14850	-	Bacterial regulatory protein, AsnC family
1417	 59.11	0	1539350..1539574	+	74	189024685	-	BAbS19_I14860	-	Bacterial regulatory protein, MarR family
1418	 61.02	0	1539669..1540961	+	430	189024686	-	BAbS19_I14870	-	Major facilitator superfamily (MFS)
1419	 62.94	+1	1540956..1541921	-	321	189024687	-	BAbS19_I14880	-	methyltransferase
1420	 57.98	0	1541927..1543123	-	398	189024688	-	BAbS19_I14890	-	hypothetical protein
1421	 52.08	-1	1543120..1543263	-	47	189024689	-	BAbS19_I14900	-	hypothetical protein
1422	 56.04	0	1543558..1544526	+	322	189024690	-	BAbS19_I14910	-	Substrate-binding region of ABC-type glycine betaine transport system
1423	 56.51	0	1544615..1545451	+	278	189024691	-	BAbS19_I14920	-	Binding-protein-dependent transport systems inner membrane component
1424	 58.83	0	1545621..1546667	+	348	189024692	-	BAbS19_I14930	-	ATP/GTP-binding site motif A (P-loop)
1425	 56.89	0	1546941..1547789	-	282	189024693	-	BAbS19_I14940	-	ATP/GTP-binding site motif A (P-loop)
1426	 56.42	0	1547786..1548634	-	282	189024694	-	BAbS19_I14950	-	ATP/GTP-binding site motif A (P-loop)
1427	 58.42	0	1548640..1549548	-	302	189024695	-	BAbS19_I14960	-	Binding-protein-dependent transport systems inner membrane component
1428	 55.56	0	1549556..1550563	-	335	189024696	-	BAbS19_I14970	-	Binding-protein-dependent transport systems inner membrane component
1429	 47.70	-2	1553363..1553710	+	115	189024697	-	BAbS19_I15010	-	Bacterial regulatory protein LysR
1430	 55.46	0	1553884..1554570	+	228	189024698	-	BAbS19_I15020	-	tRNA/rRNA methyltransferase (SpoU)
1431	 59.73	0	1554793..1555989	-	398	189024699	-	BAbS19_I15030	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1432	 47.83	-2	1556027..1556164	-	45	189024700	-	BAbS19_I15040	-	hypothetical protein
1433	 57.97	0	1556294..1556569	+	91	189024701	-	BAbS19_I15050	-	hypothetical protein
1434	 56.12	0	1556772..1557065	+	97	189024702	-	BAbS19_I15060	-	hypothetical protein
1435	 55.51	0	1557113..1557802	-	229	189024703	-	BAbS19_I15070	-	hypothetical protein
1436	 55.95	0	1558278..1558874	-	198	189024704	-	BAbS19_I15080	-	hypothetical protein
1437	 58.10	0	1559286..1559915	+	209	189024705	-	BAbS19_I15090	-	hypothetical protein
1438	 54.94	0	1560028..1560726	-	232	189024706	-	BAbS19_I15100	-	Transcriptional regulatory protein
1439	 56.74	0	1561257..1561649	+	130	189024707	-	BAbS19_I15110	-	hypothetical protein
1440	 56.62	0	1561733..1562857	-	374	189024708	-	BAbS19_I15120	-	DegT/DnrJ/EryC1/StrS aminotransferase
1441	 56.64	0	1563017..1563973	-	318	189024709	-	BAbS19_I15130	-	Oxidoreductase, N-terminal
1442	 50.45	-1	1564805..1565587	-	260	189024710	-	BAbS19_I15140	-	Glycosyl transferase, family 25
1443	 60.59	0	1566332..1569439	+	1035	189024711	-	BAbS19_I15150	-	sensory box histidine kinase
1444	 59.96	0	1570180..1572117	+	645	189024712	-	BAbS19_I15160	-	AsmA
1445	 58.88	0	1572125..1572946	-	273	189024713	-	BAbS19_I15170	-	Binding-protein-dependent transport systems inner membrane component
1446	 57.24	0	1573874..1575019	-	381	189024714	-	BAbS19_I15200	-	Putrescine transport atp-binding protein POTG
1447	 54.80	0	1575261..1576406	-	381	189024715	-	BAbS19_I15210	-	hypothetical spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1448	 62.41	+1	1576586..1577854	-	422	189024716	-	BAbS19_I15220	-	transcriptional regulator, Cro/CI family
1449	 61.36	+1	1577867..1577998	-	43	189024717	-	BAbS19_I15230	-	transcriptional regulator, Cro/CI family
1450	 60.54	0	1578247..1579536	+	429	189024718	-	BAbS19_I15240	-	Isocitrate lyase and phosphorylmutase
1451	 56.12	0	1579571..1579807	+	78	189024719	-	BAbS19_I15250	-	hypothetical protein
1452	 55.56	0	1579807..1579932	+	41	189024720	-	BAbS19_I15260	-	hypothetical protein
1453	 59.51	0	1580520..1581287	+	255	189024721	-	BAbS19_I15270	-	Short-chain dehydrogenase/reductase SDR
1454	 57.11	0	1581353..1582147	+	264	189024722	-	BAbS19_I15280	-	Short-chain dehydrogenase/reductase SDR
1455	 57.72	0	1583930..1584544	+	204	189024723	-	BAbS19_I15310	-	Multiple antibiotic resistance protein MARC
1456	 54.59	0	1584847..1585608	+	253	189024724	-	BAbS19_I15320	-	OmpA-like transmembrane domain protein
1457	 54.16	0	1585745..1587175	-	476	189024725	-	BAbS19_I15330	-	Patatin
1458	 47.06	-2	1587596..1587697	-	33	189024726	-	BAbS19_I15340	-	hypothetical protein
1459	 49.65	-2	1587847..1588128	+	93	189024727	-	BAbS19_I15350	-	hypothetical protein
1460	 56.33	0	1588405..1589052	-	215	189024728	-	BAbS19_I15360	-	dihydroxyacetone kinase family
1461	 57.48	0	1591360..1592001	-	213	189024729	-	BAbS19_I15390	-	Dihydroxyacetone kinase
1462	 57.10	0	1592013..1593005	-	330	189024730	-	BAbS19_I15400	-	Dihydroxyacetone kinase
1463	 55.68	0	1593038..1593811	-	257	189024731	-	BAbS19_I15410	-	Short-chain dehydrogenase/reductase SDR
1464	 55.25	0	1593900..1594889	-	329	189024732	-	BAbS19_I15420	-	Periplasmic binding protein/LacI transcriptional regulator
1465	 57.31	0	1595065..1596069	-	334	189024733	-	BAbS19_I15430	-	Bacterial inner-membrane translocator
1466	 55.85	0	1596165..1597643	-	492	189024734	-	BAbS19_I15440	-	RbsA-2, ribose ABC transporter, ATP-binding protein
1467	 53.46	-1	1597939..1598256	+	105	189024735	-	BAbS19_I15450	-	hypothetical protein
1468	 52.71	-1	1598386..1598514	-	42	189024736	-	BAbS19_I15460	-	hypothetical protein
1469	 56.52	0	1598658..1600274	+	538	189024737	-	BAbS19_I15470	-	Glucose-methanol-choline oxidoreductase
1470	 45.10	-2	1600923..1601075	+	50	189024738	-	BAbS19_I15480	-	hypothetical protein
1471	 58.88	0	1606974..1607795	-	273	189024739	-	BAbS19_I15490	-	Bacterial regulatory protein, IclR family
1472	 58.82	0	1607913..1609364	+	483	189024740	-	BAbS19_I15500	-	Aldehyde dehydrogenase
1473	 56.87	0	1609388..1610071	+	227	189024741	-	BAbS19_I15510	-	hypothetical protein
1474	 57.80	0	1610184..1610702	+	172	189024742	-	BAbS19_I15520	-	Basic helix-loop-helix dimerization domain bHLH
1475	 56.54	0	1610719..1611291	-	190	189024743	-	BAbS19_I15530	-	HNH endonuclease
1476	 63.66	+1	1611565..1612263	-	232	189024744	-	BAbS19_I15540	-	HhH-GPD
1477	 58.56	0	1612285..1613160	+	291	189024745	-	BAbS19_I15550	-	Glutamyl-tRNA synthetase, class Ic
1478	 58.34	0	1613303..1615489	+	728	189024746	-	BAbS19_I15560	-	Malate synthase
1479	 55.83	0	1615680..1616288	+	202	189024747	-	BAbS19_I15570	-	GCN5-related N-acetyltransferase
1480	 58.44	0	1616347..1617258	-	303	189024748	-	BAbS19_I15580	-	Sigma-70 factor family
1481	 59.70	0	1617689..1618693	-	334	189024749	-	BAbS19_I15590	-	ribosomal large subunit pseudouridine synthase, RluD subfamily
1482	 58.28	0	1618749..1619225	+	158	189024750	-	BAbS19_I15600	-	hypothetical protein
1483	 51.73	-1	1619481..1620029	+	182	189024751	-	BAbS19_I15610	-	Ferric uptake regulation protein
1484	 56.65	0	1620265..1621272	-	335	189024752	-	BAbS19_I15620	-	Sensory transduction histidine kinase
1485	 48.48	-2	1621468..1621632	-	54	189024753	-	BAbS19_I15630	-	hypothetical protein
1486	 56.23	0	1621782..1622576	-	264	189024754	-	BAbS19_I15640	-	Response regulator receiver
1487	 60.56	0	1623023..1623595	+	190	189024755	-	BAbS19_I15650	-	Sigma factor, ECF subfamily
1488	 56.96	0	1623796..1625238	+	480	189024756	-	BAbS19_I15660	-	sensor histidine kinase
1489	 57.87	0	1625299..1625730	-	143	189024757	-	BAbS19_I15670	-	hypothetical protein
1490	 57.63	0	1625739..1626092	-	117	189024758	-	BAbS19_I15680	-	DNA gyrase, subunit B
1491	 57.30	0	1626257..1627099	-	280	189024759	-	BAbS19_I15690	-	hypothetical protein
1492	 57.86	0	1627272..1627430	-	52	189024760	-	BAbS19_I15700	-	hypothetical protein
1493	 63.64	+1	1627880..1628803	+	307	189024761	-	BAbS19_I15710	-	MotA/TolQ/ExbB proton channel
1494	 60.20	0	1628809..1629303	+	164	189024762	-	BAbS19_I15720	-	Biopolymer transport protein ExbD/TolR
1495	 61.74	+1	1629300..1630151	+	283	189024763	-	BAbS19_I15730	-	TonB-dependent receptor
1496	 54.88	0	1630194..1630838	-	214	189024764	-	BAbS19_I15740	-	hypothetical protein
1497	 58.93	0	1630984..1631784	-	266	189024765	-	BAbS19_I15750	-	Protein of unknown function DUF214
1498	 59.92	0	1631793..1632770	-	325	189024766	-	BAbS19_I15760	-	ATP/GTP-binding site motif A (P-loop)
1499	 58.92	0	1632938..1634164	-	408	189024767	-	BAbS19_I15770	-	Secretion protein HlyD
1500	 61.18	0	1634399..1634872	-	157	189024768	-	BAbS19_I15780	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1501	 56.48	0	1635095..1635565	-	156	189024769	-	BAbS19_I15790	-	Bacterial regulatory protein, AsnC family
1502	 53.24	-1	1635711..1635926	+	71	189024770	-	BAbS19_I15800	-	hypothetical protein
1503	 60.66	0	1636014..1636829	+	271	189024771	-	BAbS19_I15810	-	Glutamine amidotransferase, class-II
1504	 59.35	0	1636856..1637839	-	327	189024772	-	BAbS19_I15820	-	hypothetical protein
1505	 59.87	0	1638034..1639386	+	450	189024773	-	BAbS19_I15830	-	Thromboxane receptor
1506	 60.52	0	1639596..1640993	-	465	189024774	-	BAbS19_I15840	-	Basic-leucine zipper (bZIP) transcription factor
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.