IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1377	 57.81	0	1496519..1497670	+	383	189024645	-	BAbS19_I14460	-	Metallopeptidase family M24
1378	 59.12	0	1497736..1498278	+	180	189024646	-	BAbS19_I14470	-	lipoprotein, putative
1379	 59.59	0	1498616..1499548	+	310	189024647	-	BAbS19_I14480	-	ribose-phosphate pyrophosphokinase
1380	 62.16	+1	1499696..1501381	-	561	189024648	-	BAbS19_I14490	-	ATP/GTP-binding site motif A (P-loop)
1381	 58.33	0	1501929..1502552	+	207	189024649	-	BAbS19_I14500	-	Ribosomal protein L25
1382	 57.93	0	1502773..1503333	+	186	189024650	-	BAbS19_I14510	-	Peptidyl-tRNA hydrolase
1383	 59.33	0	1503421..1504524	+	367	189024651	-	BAbS19_I14520	-	GTP-binding protein, putative
1384	 58.33	0	1504798..1505085	+	95	189024652	-	BAbS19_I14530	-	MaoC-like dehydratase
1385	 58.18	0	1505082..1505564	+	160	189024653	-	BAbS19_I14540	-	MaoC-like dehydratase
1386	 57.14	0	1505606..1506151	-	181	189024654	-	BAbS19_I14550	-	adenine phosphoribosyltransferase
1387	 57.16	0	1506474..1507346	-	290	189024655	-	BAbS19_I14560	-	Ribosomal protein P2
1388	 57.04	0	1507375..1508673	-	432	189024656	-	BAbS19_I14570	-	Cytochrome b/b6
1389	 58.16	0	1508695..1509258	-	187	189024657	-	BAbS19_I14580	-	Ubiquinol-cytochrome C reductase iron-sulfur subunit
1390	 58.43	0	1509510..1511378	-	622	189024658	-	BAbS19_I14590	-	hypothetical ABC transporter, ATP-binding/permease
1391	 57.51	0	1511532..1513376	-	614	189024659	-	BAbS19_I14600	-	ABC transporter, ATP-binding protein
1392	 58.33	0	1513533..1514012	+	159	189024660	-	BAbS19_I14610	-	tRNA/rRNA methyltransferase (SpoU)
1393	 57.51	0	1514122..1515159	+	345	189024661	-	BAbS19_I14620	-	purine nucleoside permease
1394	 62.07	+1	1515271..1515531	-	86	189024662	-	BAbS19_I14630	-	hypothetical protein
1395	 57.79	0	1515825..1516736	+	303	189024663	-	BAbS19_I14640	-	Coproporphyrinogen III oxidase
1396	 60.81	0	1516770..1517264	-	164	189024664	-	BAbS19_I14650	-	GCN5-related N-acetyltransferase
1397	 49.12	-2	1517352..1517465	-	37	189024665	-	BAbS19_I14660	-	Aspartyl/asparaginyl beta-hydroxylase
1398	 58.04	0	1517585..1518187	-	200	189024666	-	BAbS19_I14670	-	lipid A-myristate beta-hydroxylase
1399	 59.28	0	1518297..1519568	-	423	189024667	-	BAbS19_I14680	-	Polynucleotide adenylyltransferase
1400	 61.06	0	1519565..1520188	-	207	189024668	-	BAbS19_I14690	-	MutT/nudix family protein
1401	 60.21	0	1520185..1520850	-	221	189024669	-	BAbS19_I14700	-	hypothetical protein
1402	 62.00	+1	1520970..1521977	+	335	189024670	-	BAbS19_I14710	-	Chaperonin clpA/B
1403	 63.34	+1	1521977..1522909	+	310	189024671	-	BAbS19_I14720	-	Protein of unknown function DUF58
1404	 61.57	+1	1522906..1525752	+	948	189024672	-	BAbS19_I14730	-	RNA-binding region RNP-1 (RNA recognition motif)
1405	 60.53	0	1525816..1527885	+	689	189024673	-	BAbS19_I14740	-	hypothetical protein
1406	 63.12	+1	1527953..1528459	-	168	189024674	-	BAbS19_I14750	-	GCN5-related N-acetyltransferase
1407	 56.81	0	1528763..1529746	+	327	189024675	-	BAbS19_I14760	-	Glutathione S-transferase, C-terminal
1408	 56.29	0	1529894..1530577	+	227	189024676	-	BAbS19_I14770	-	OmpW family
1409	 53.51	-1	1530611..1531066	-	151	189024677	-	BAbS19_I14780	-	NUDIX hydrolase
1410	 59.76	0	1531166..1532077	+	303	189024678	-	BAbS19_I14790	-	putative phosphohydrolase, Icc family
1411	 57.41	0	1532278..1534005	-	575	189024679	-	BAbS19_I14800	-	HMG-CoA lyase-like protein
1412	 58.53	0	1534310..1535218	-	302	189024680	-	BAbS19_I14810	-	cation efflux family protein
1413	 46.10	-2	1535228..1535509	+	93	189024681	-	BAbS19_I14820	-	hypothetical protein
1414	 58.33	0	1535688..1537883	-	731	189024683	-	BAbS19_I14830	-	Glutamine amidotransferase class-I
1415	 52.91	-1	1537882..1538070	+	62	189024682	-	BAbS19_I14840	-	hypothetical protein
1416	 55.19	0	1538562..1539023	+	153	189024684	-	BAbS19_I14850	-	Bacterial regulatory protein, AsnC family
1417	 59.11	0	1539350..1539574	+	74	189024685	-	BAbS19_I14860	-	Bacterial regulatory protein, MarR family
1418	 61.02	0	1539669..1540961	+	430	189024686	-	BAbS19_I14870	-	Major facilitator superfamily (MFS)
1419	 62.94	+1	1540956..1541921	-	321	189024687	-	BAbS19_I14880	-	methyltransferase
1420	 57.98	0	1541927..1543123	-	398	189024688	-	BAbS19_I14890	-	hypothetical protein
1421	 52.08	-1	1543120..1543263	-	47	189024689	-	BAbS19_I14900	-	hypothetical protein
1422	 56.04	0	1543558..1544526	+	322	189024690	-	BAbS19_I14910	-	Substrate-binding region of ABC-type glycine betaine transport system
1423	 56.51	0	1544615..1545451	+	278	189024691	-	BAbS19_I14920	-	Binding-protein-dependent transport systems inner membrane component
1424	 58.83	0	1545621..1546667	+	348	189024692	-	BAbS19_I14930	-	ATP/GTP-binding site motif A (P-loop)
1425	 56.89	0	1546941..1547789	-	282	189024693	-	BAbS19_I14940	-	ATP/GTP-binding site motif A (P-loop)
1426	 56.42	0	1547786..1548634	-	282	189024694	-	BAbS19_I14950	-	ATP/GTP-binding site motif A (P-loop)
1427	 58.42	0	1548640..1549548	-	302	189024695	-	BAbS19_I14960	-	Binding-protein-dependent transport systems inner membrane component
1428	 55.56	0	1549556..1550563	-	335	189024696	-	BAbS19_I14970	-	Binding-protein-dependent transport systems inner membrane component
1429	 47.70	-2	1553363..1553710	+	115	189024697	-	BAbS19_I15010	-	Bacterial regulatory protein LysR
1430	 55.46	0	1553884..1554570	+	228	189024698	-	BAbS19_I15020	-	tRNA/rRNA methyltransferase (SpoU)
1431	 59.73	0	1554793..1555989	-	398	189024699	-	BAbS19_I15030	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1432	 47.83	-2	1556027..1556164	-	45	189024700	-	BAbS19_I15040	-	hypothetical protein
1433	 57.97	0	1556294..1556569	+	91	189024701	-	BAbS19_I15050	-	hypothetical protein
1434	 56.12	0	1556772..1557065	+	97	189024702	-	BAbS19_I15060	-	hypothetical protein
1435	 55.51	0	1557113..1557802	-	229	189024703	-	BAbS19_I15070	-	hypothetical protein
1436	 55.95	0	1558278..1558874	-	198	189024704	-	BAbS19_I15080	-	hypothetical protein
1437	 58.10	0	1559286..1559915	+	209	189024705	-	BAbS19_I15090	-	hypothetical protein
1438	 54.94	0	1560028..1560726	-	232	189024706	-	BAbS19_I15100	-	Transcriptional regulatory protein
1439	 56.74	0	1561257..1561649	+	130	189024707	-	BAbS19_I15110	-	hypothetical protein
1440	 56.62	0	1561733..1562857	-	374	189024708	-	BAbS19_I15120	-	DegT/DnrJ/EryC1/StrS aminotransferase
1441	 56.64	0	1563017..1563973	-	318	189024709	-	BAbS19_I15130	-	Oxidoreductase, N-terminal
1442	 50.45	-1	1564805..1565587	-	260	189024710	-	BAbS19_I15140	-	Glycosyl transferase, family 25
1443	 60.59	0	1566332..1569439	+	1035	189024711	-	BAbS19_I15150	-	sensory box histidine kinase
1444	 59.96	0	1570180..1572117	+	645	189024712	-	BAbS19_I15160	-	AsmA
1445	 58.88	0	1572125..1572946	-	273	189024713	-	BAbS19_I15170	-	Binding-protein-dependent transport systems inner membrane component
1446	 57.24	0	1573874..1575019	-	381	189024714	-	BAbS19_I15200	-	Putrescine transport atp-binding protein POTG
1447	 54.80	0	1575261..1576406	-	381	189024715	-	BAbS19_I15210	-	hypothetical spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1448	 62.41	+1	1576586..1577854	-	422	189024716	-	BAbS19_I15220	-	transcriptional regulator, Cro/CI family
1449	 61.36	+1	1577867..1577998	-	43	189024717	-	BAbS19_I15230	-	transcriptional regulator, Cro/CI family
1450	 60.54	0	1578247..1579536	+	429	189024718	-	BAbS19_I15240	-	Isocitrate lyase and phosphorylmutase
1451	 56.12	0	1579571..1579807	+	78	189024719	-	BAbS19_I15250	-	hypothetical protein
1452	 55.56	0	1579807..1579932	+	41	189024720	-	BAbS19_I15260	-	hypothetical protein
1453	 59.51	0	1580520..1581287	+	255	189024721	-	BAbS19_I15270	-	Short-chain dehydrogenase/reductase SDR
1454	 57.11	0	1581353..1582147	+	264	189024722	-	BAbS19_I15280	-	Short-chain dehydrogenase/reductase SDR
1455	 57.72	0	1583930..1584544	+	204	189024723	-	BAbS19_I15310	-	Multiple antibiotic resistance protein MARC
1456	 54.59	0	1584847..1585608	+	253	189024724	-	BAbS19_I15320	-	OmpA-like transmembrane domain protein
1457	 54.16	0	1585745..1587175	-	476	189024725	-	BAbS19_I15330	-	Patatin
1458	 47.06	-2	1587596..1587697	-	33	189024726	-	BAbS19_I15340	-	hypothetical protein
1459	 49.65	-2	1587847..1588128	+	93	189024727	-	BAbS19_I15350	-	hypothetical protein
1460	 56.33	0	1588405..1589052	-	215	189024728	-	BAbS19_I15360	-	dihydroxyacetone kinase family
1461	 57.48	0	1591360..1592001	-	213	189024729	-	BAbS19_I15390	-	Dihydroxyacetone kinase
1462	 57.10	0	1592013..1593005	-	330	189024730	-	BAbS19_I15400	-	Dihydroxyacetone kinase
1463	 55.68	0	1593038..1593811	-	257	189024731	-	BAbS19_I15410	-	Short-chain dehydrogenase/reductase SDR
1464	 55.25	0	1593900..1594889	-	329	189024732	-	BAbS19_I15420	-	Periplasmic binding protein/LacI transcriptional regulator
1465	 57.31	0	1595065..1596069	-	334	189024733	-	BAbS19_I15430	-	Bacterial inner-membrane translocator
1466	 55.85	0	1596165..1597643	-	492	189024734	-	BAbS19_I15440	-	RbsA-2, ribose ABC transporter, ATP-binding protein
1467	 53.46	-1	1597939..1598256	+	105	189024735	-	BAbS19_I15450	-	hypothetical protein
1468	 52.71	-1	1598386..1598514	-	42	189024736	-	BAbS19_I15460	-	hypothetical protein
1469	 56.52	0	1598658..1600274	+	538	189024737	-	BAbS19_I15470	-	Glucose-methanol-choline oxidoreductase
1470	 45.10	-2	1600923..1601075	+	50	189024738	-	BAbS19_I15480	-	hypothetical protein
1471	 58.88	0	1606974..1607795	-	273	189024739	-	BAbS19_I15490	-	Bacterial regulatory protein, IclR family
1472	 58.82	0	1607913..1609364	+	483	189024740	-	BAbS19_I15500	-	Aldehyde dehydrogenase
1473	 56.87	0	1609388..1610071	+	227	189024741	-	BAbS19_I15510	-	hypothetical protein
1474	 57.80	0	1610184..1610702	+	172	189024742	-	BAbS19_I15520	-	Basic helix-loop-helix dimerization domain bHLH
1475	 56.54	0	1610719..1611291	-	190	189024743	-	BAbS19_I15530	-	HNH endonuclease
1476	 63.66	+1	1611565..1612263	-	232	189024744	-	BAbS19_I15540	-	HhH-GPD
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.