IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1324	 56.89	0	1444334..1444906	-	190	189024592	-	BAbS19_I13930	-	hypothetical protein
1325	 55.56	0	1445286..1445636	+	116	189024593	-	BAbS19_I13940	-	Phage integrase
1326	 55.78	0	1446054..1446806	+	250	189024594	-	BAbS19_I13950	-	immunoreactive 28 kDa outer membrane protein
1327	 58.84	0	1446980..1447324	-	114	189024595	-	BAbS19_I13960	-	Antifreeze protein, type I
1328	 54.47	0	1447568..1448026	-	152	189024596	-	BAbS19_I13970	-	hypothetical protein
1329	 54.98	0	1448218..1448508	-	96	189024597	-	BAbS19_I13980	-	hypothetical protein
1330	 56.91	0	1448532..1450550	-	672	189024598	-	BAbS19_I13990	-	RNA polymerase sigma factor
1331	 61.64	+1	1451018..1452985	-	655	189024599	-	BAbS19_I14000	-	DNA primase
1332	 59.39	0	1453355..1455031	+	558	189024600	-	BAbS19_I14010	-	Na+/Pi-cotransporter
1333	 57.62	0	1455098..1455550	-	150	189024601	-	BAbS19_I14020	-	GatB/Yqey
1334	 60.70	0	1455930..1457153	+	407	189024602	-	BAbS19_I14030	-	carbamoyl-phosphate synthase small subunit
1335	 61.06	0	1457325..1458251	-	308	189024603	-	BAbS19_I14040	-	Neutral zinc metallopeptidase
1336	 54.14	0	1458368..1458886	-	172	189024604	-	BAbS19_I14050	-	hypothetical protein
1337	 56.81	0	1458957..1459676	+	239	189024605	-	BAbS19_I14060	-	hypothetical protein
1338	 60.42	0	1460006..1463494	+	1162	189024606	-	BAbS19_I14070	-	carbamoyl-phosphate synthase large subunit
1339	 58.47	0	1464211..1466076	-	621	189024607	-	BAbS19_I14080	-	ABC transporter
1340	 56.01	0	1466287..1466727	+	146	189024608	-	BAbS19_I14090	-	NUDIX hydrolase
1341	 58.57	0	1466920..1467129	+	69	189024609	-	BAbS19_I14100	-	Cold-shock DNA-binding domain protein
1342	 57.03	0	1467259..1467870	-	203	189024610	-	BAbS19_I14110	-	Glutathione S-transferase
1343	 58.27	0	1468120..1469322	+	400	189024611	-	BAbS19_I14120	-	aspartate aminotransferase
1344	 42.59	-2	1469632..1469739	+	35	189024612	-	BAbS19_I14130	-	hypothetical protein
1345	 57.17	0	1469791..1470696	-	301	189024613	-	BAbS19_I14140	-	Bacterial regulatory protein LysR
1346	 59.49	0	1470767..1471741	-	324	189024614	-	BAbS19_I14150	-	TrxB, thioredoxin reductase
1347	 57.42	0	1472198..1473463	+	421	189024615	-	BAbS19_I14160	-	Pyrokinin
1348	 58.81	0	1473721..1474191	+	156	189024616	-	BAbS19_I14170	-	Bacterial regulatory protein, AsnC family
1349	 57.57	0	1474198..1475076	-	292	189024617	-	BAbS19_I14180	-	Glycosyl transferase, group 1
1350	 55.06	0	1475269..1475742	-	157	189024618	-	BAbS19_I14190	-	transcription elongation factor GreA
1351	 54.83	0	1476011..1477066	-	351	189024619	-	BAbS19_I14200	-	hypothetical protein
1352	 48.92	-2	1477056..1477241	-	61	189024621	-	BAbS19_I14210	-	hypothetical protein
1353	 60.75	0	1477222..1478133	+	303	189024620	-	BAbS19_I14220	-	Protein of unknown function DUF6
1354	 53.28	-1	1478138..1478488	-	116	189024622	-	BAbS19_I14230	-	Protein of unknown function DUF486
1355	 59.87	0	1478766..1479677	+	303	189024623	-	BAbS19_I14240	-	hypothetical protein
1356	 57.95	0	1479810..1480199	-	129	189024624	-	BAbS19_I14250	-	Thioesterase superfamily
1357	 58.47	0	1480421..1481176	+	251	189024625	-	BAbS19_I14260	-	Bacterial SH3-like region
1358	 60.18	0	1481127..1483949	+	940	189024626	-	BAbS19_I14270	-	excinuclease ABC subunit B
1359	 60.45	0	1484081..1484884	+	267	189024627	-	BAbS19_I14280	-	SLT domain protein
1360	 52.31	-1	1485379..1485594	+	71	189024628	-	BAbS19_I14290	-	Cold-shock DNA-binding domain protein
1361	 50.00	-2	1485832..1485951	-	39	189024629	-	BAbS19_I14300	-	hypothetical protein BR1515
1362	 61.79	+1	1486011..1486523	+	170	189024630	-	BAbS19_I14310	-	Glutelin
1363	 58.30	0	1486582..1487238	-	218	189024631	-	BAbS19_I14320	-	Beta-lactamase-like protein
1364	 58.16	0	1487452..1487733	-	93	189024632	-	BAbS19_I14330	-	C-5 cytosine-specific DNA methylase
1365	 46.46	-2	1487908..1488204	+	98	189024633	-	BAbS19_I14340	-	hypothetical protein
1366	 53.37	-1	1488201..1488794	+	197	189024634	-	BAbS19_I14350	-	Bacterial regulatory protein, MarR family
1367	 59.32	0	1488894..1489601	+	235	189024635	-	BAbS19_I14360	-	Transcriptional regulatory protein
1368	 59.52	0	1489745..1491088	+	447	189024636	-	BAbS19_I14370	-	Osmolarity sensor protein ENVZ
1369	 43.33	-2	1491420..1491539	-	39	189024637	-	BAbS19_I14380	-	hypothetical protein
1370	 54.89	0	1491520..1491867	-	115	189024638	-	BAbS19_I14390	-	t-RNA-binding region
1371	 56.69	0	1492006..1492506	-	166	189024639	-	BAbS19_I14400	-	hypothetical protein
1372	 56.39	0	1492935..1493255	-	106	189024640	-	BAbS19_I14410	-	Protein of unknown function DUF526
1373	 51.77	-1	1493273..1493413	-	46	189024641	-	BAbS19_I14420	-	GCN5-related N-acetyltransferase
1374	 61.58	+1	1493440..1494285	+	281	189024642	-	BAbS19_I14430	-	Prolipoprotein diacylglyceryl transferase
1375	 58.87	0	1494452..1495375	+	307	189024643	-	BAbS19_I14440	-	Protein of unknown function DUF185
1376	 58.15	0	1495609..1496406	+	265	189024644	-	BAbS19_I14450	-	Protein of unknown function DUF152
1377	 57.81	0	1496519..1497670	+	383	189024645	-	BAbS19_I14460	-	Metallopeptidase family M24
1378	 59.12	0	1497736..1498278	+	180	189024646	-	BAbS19_I14470	-	lipoprotein, putative
1379	 59.59	0	1498616..1499548	+	310	189024647	-	BAbS19_I14480	-	ribose-phosphate pyrophosphokinase
1380	 62.16	+1	1499696..1501381	-	561	189024648	-	BAbS19_I14490	-	ATP/GTP-binding site motif A (P-loop)
1381	 58.33	0	1501929..1502552	+	207	189024649	-	BAbS19_I14500	-	Ribosomal protein L25
1382	 57.93	0	1502773..1503333	+	186	189024650	-	BAbS19_I14510	-	Peptidyl-tRNA hydrolase
1383	 59.33	0	1503421..1504524	+	367	189024651	-	BAbS19_I14520	-	GTP-binding protein, putative
1384	 58.33	0	1504798..1505085	+	95	189024652	-	BAbS19_I14530	-	MaoC-like dehydratase
1385	 58.18	0	1505082..1505564	+	160	189024653	-	BAbS19_I14540	-	MaoC-like dehydratase
1386	 57.14	0	1505606..1506151	-	181	189024654	-	BAbS19_I14550	-	adenine phosphoribosyltransferase
1387	 57.16	0	1506474..1507346	-	290	189024655	-	BAbS19_I14560	-	Ribosomal protein P2
1388	 57.04	0	1507375..1508673	-	432	189024656	-	BAbS19_I14570	-	Cytochrome b/b6
1389	 58.16	0	1508695..1509258	-	187	189024657	-	BAbS19_I14580	-	Ubiquinol-cytochrome C reductase iron-sulfur subunit
1390	 58.43	0	1509510..1511378	-	622	189024658	-	BAbS19_I14590	-	hypothetical ABC transporter, ATP-binding/permease
1391	 57.51	0	1511532..1513376	-	614	189024659	-	BAbS19_I14600	-	ABC transporter, ATP-binding protein
1392	 58.33	0	1513533..1514012	+	159	189024660	-	BAbS19_I14610	-	tRNA/rRNA methyltransferase (SpoU)
1393	 57.51	0	1514122..1515159	+	345	189024661	-	BAbS19_I14620	-	purine nucleoside permease
1394	 62.07	+1	1515271..1515531	-	86	189024662	-	BAbS19_I14630	-	hypothetical protein
1395	 57.79	0	1515825..1516736	+	303	189024663	-	BAbS19_I14640	-	Coproporphyrinogen III oxidase
1396	 60.81	0	1516770..1517264	-	164	189024664	-	BAbS19_I14650	-	GCN5-related N-acetyltransferase
1397	 49.12	-2	1517352..1517465	-	37	189024665	-	BAbS19_I14660	-	Aspartyl/asparaginyl beta-hydroxylase
1398	 58.04	0	1517585..1518187	-	200	189024666	-	BAbS19_I14670	-	lipid A-myristate beta-hydroxylase
1399	 59.28	0	1518297..1519568	-	423	189024667	-	BAbS19_I14680	-	Polynucleotide adenylyltransferase
1400	 61.06	0	1519565..1520188	-	207	189024668	-	BAbS19_I14690	-	MutT/nudix family protein
1401	 60.21	0	1520185..1520850	-	221	189024669	-	BAbS19_I14700	-	hypothetical protein
1402	 62.00	+1	1520970..1521977	+	335	189024670	-	BAbS19_I14710	-	Chaperonin clpA/B
1403	 63.34	+1	1521977..1522909	+	310	189024671	-	BAbS19_I14720	-	Protein of unknown function DUF58
1404	 61.57	+1	1522906..1525752	+	948	189024672	-	BAbS19_I14730	-	RNA-binding region RNP-1 (RNA recognition motif)
1405	 60.53	0	1525816..1527885	+	689	189024673	-	BAbS19_I14740	-	hypothetical protein
1406	 63.12	+1	1527953..1528459	-	168	189024674	-	BAbS19_I14750	-	GCN5-related N-acetyltransferase
1407	 56.81	0	1528763..1529746	+	327	189024675	-	BAbS19_I14760	-	Glutathione S-transferase, C-terminal
1408	 56.29	0	1529894..1530577	+	227	189024676	-	BAbS19_I14770	-	OmpW family
1409	 53.51	-1	1530611..1531066	-	151	189024677	-	BAbS19_I14780	-	NUDIX hydrolase
1410	 59.76	0	1531166..1532077	+	303	189024678	-	BAbS19_I14790	-	putative phosphohydrolase, Icc family
1411	 57.41	0	1532278..1534005	-	575	189024679	-	BAbS19_I14800	-	HMG-CoA lyase-like protein
1412	 58.53	0	1534310..1535218	-	302	189024680	-	BAbS19_I14810	-	cation efflux family protein
1413	 46.10	-2	1535228..1535509	+	93	189024681	-	BAbS19_I14820	-	hypothetical protein
1414	 58.33	0	1535688..1537883	-	731	189024683	-	BAbS19_I14830	-	Glutamine amidotransferase class-I
1415	 52.91	-1	1537882..1538070	+	62	189024682	-	BAbS19_I14840	-	hypothetical protein
1416	 55.19	0	1538562..1539023	+	153	189024684	-	BAbS19_I14850	-	Bacterial regulatory protein, AsnC family
1417	 59.11	0	1539350..1539574	+	74	189024685	-	BAbS19_I14860	-	Bacterial regulatory protein, MarR family
1418	 61.02	0	1539669..1540961	+	430	189024686	-	BAbS19_I14870	-	Major facilitator superfamily (MFS)
1419	 62.94	+1	1540956..1541921	-	321	189024687	-	BAbS19_I14880	-	methyltransferase
1420	 57.98	0	1541927..1543123	-	398	189024688	-	BAbS19_I14890	-	hypothetical protein
1421	 52.08	-1	1543120..1543263	-	47	189024689	-	BAbS19_I14900	-	hypothetical protein
1422	 56.04	0	1543558..1544526	+	322	189024690	-	BAbS19_I14910	-	Substrate-binding region of ABC-type glycine betaine transport system
1423	 56.51	0	1544615..1545451	+	278	189024691	-	BAbS19_I14920	-	Binding-protein-dependent transport systems inner membrane component
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.