IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1253	 58.67	0	1364719..1366293	-	524	189024521	-	BAbS19_I13200	-	serine protease Do, hypothetical
1254	 60.22	0	1366517..1366702	-	61	189024522	-	BAbS19_I13210	-	hypothetical protein
1255	 60.13	0	1366722..1367624	-	300	189024523	-	BAbS19_I13220	-	Band 7 protein
1256	 58.94	0	1367624..1368826	-	400	189024524	-	BAbS19_I13230	-	Band 7 protein
1257	 57.80	0	1368903..1369421	-	172	189024525	-	BAbS19_I13240	-	Dihydrofolate reductase
1258	 55.47	0	1369424..1370218	-	264	189024526	-	BAbS19_I13250	-	Thymidylate synthase
1259	 57.69	0	1370319..1370630	-	103	189024527	-	BAbS19_I13260	-	hypothetical protein
1260	 60.06	0	1371144..1372415	-	423	189024528	-	BAbS19_I13270	-	Drug resistance transporter Bcr/CflA subfamily
1261	 51.70	-1	1372432..1372578	-	48	189024529	-	BAbS19_I13280	-	hypothetical protein
1262	 56.62	0	1372809..1373435	+	208	189024530	-	BAbS19_I13290	-	Bacterial regulatory protein TetR, HTH motif
1263	 54.21	0	1373516..1374085	+	189	189024531	-	BAbS19_I13300	-	hypothetical protein
1264	 54.24	0	1374198..1374374	+	58	189024532	-	BAbS19_I13310	-	hypothetical protein
1265	 52.24	-1	1374466..1374666	+	66	189024533	-	BAbS19_I13320	-	hypothetical protein
1266	 58.72	0	1374663..1374989	+	108	189024534	-	BAbS19_I13330	-	hypothetical protein
1267	 60.12	0	1374943..1378686	-	1247	189024535	-	BAbS19_I13340	-	Alpha-isopropylmalate/homocitrate synthase
1268	 48.23	-2	1378741..1378881	-	46	189024536	-	BAbS19_I13350	-	hypothetical protein
1269	 59.70	0	1378878..1380284	-	468	189024537	-	BAbS19_I13360	-	FAD linked oxidase, C-terminal
1270	 60.78	0	1380309..1380818	-	169	189024538	-	BAbS19_I13370	-	hypothetical protein
1271	 60.35	0	1380938..1382014	+	358	189024539	-	BAbS19_I13380	-	serine/threonine protein kinase
1272	 59.37	0	1382073..1384649	+	858	189024540	-	BAbS19_I13390	-	UvrD/REP helicase
1273	 54.22	0	1384723..1385220	-	165	189024541	-	BAbS19_I13400	-	hypothetical protein
1274	 58.77	0	1385285..1385917	-	210	189024542	-	BAbS19_I13410	-	Bacterial transferase hexapeptide repeat
1275	 55.61	0	1386083..1386670	+	195	189024543	-	BAbS19_I13420	-	Electron transport protein SCO1/SenC
1276	 58.28	0	1386708..1387565	+	285	189024544	-	BAbS19_I13430	-	SAM (and some other nucleotide) binding motif
1277	 59.44	0	1387614..1389440	+	608	189024545	-	BAbS19_I13440	-	Metallopeptidase family M24
1278	 56.88	0	1389441..1390145	-	234	189024546	-	BAbS19_I13450	-	hypothetical protein
1279	 59.95	0	1390145..1392304	-	719	189024547	-	BAbS19_I13460	-	DNA ligase
1280	 62.26	+1	1392490..1394169	-	559	189024548	-	BAbS19_I13470	-	ATP/GTP-binding site motif A (P-loop)
1281	 56.48	0	1394182..1395045	-	287	189024549	-	BAbS19_I13480	-	TPR repeat-containing protein
1282	 56.33	0	1395452..1396312	-	286	189024550	-	BAbS19_I13490	-	UDP-3-0-acyl N-acetylglucosamine deacetylase
1283	 63.90	+1	1396852..1398552	-	566	189024551	-	BAbS19_I13500	-	Cell division protein FtsZ
1284	 60.62	0	1398649..1399971	-	440	189024552	-	BAbS19_I13510	-	Heat shock protein Hsp70
1285	 58.44	0	1399968..1400903	-	311	189024553	-	BAbS19_I13520	-	Cell division protein FTSQ
1286	 55.45	0	1400891..1401817	-	308	189024554	-	BAbS19_I13530	-	D-alanine--D-alanine ligase/VANA/B/C
1287	 61.09	0	1402060..1403028	-	322	189024555	-	BAbS19_I13540	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1288	 61.09	0	1403028..1404443	-	471	189024556	-	BAbS19_I13550	-	UDP-N-acetylmuramate--L-alanine ligase
1289	 61.84	+1	1404440..1405579	-	379	189024557	-	BAbS19_I13560	-	N-acetylglucosaminyl transferase
1290	 59.15	0	1405806..1406963	-	385	189024558	-	BAbS19_I13570	-	Cell cycle protein
1291	 60.54	0	1406963..1408366	-	467	189024559	-	BAbS19_I13580	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1292	 57.25	0	1408379..1409461	-	360	189024560	-	BAbS19_I13590	-	Glycosyl transferase, family 4
1293	 58.99	0	1409488..1410933	-	481	189024561	-	BAbS19_I13600	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1294	 59.92	0	1410930..1412396	-	488	189024562	-	BAbS19_I13610	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1295	 59.38	0	1412457..1414280	-	607	189024563	-	BAbS19_I13620	-	penicillin-binding protein
1296	 56.52	0	1414271..1414684	-	137	189024564	-	BAbS19_I13630	-	hypothetical protein
1297	 61.38	+1	1414689..1415729	-	346	189024565	-	BAbS19_I13640	-	Bacterial methyltransferase
1298	 58.72	0	1416156..1417526	+	456	189024566	-	BAbS19_I13650	-	Natural resistance-associated macrophage protein
1299	 55.19	0	1418228..1418872	-	214	189024567	-	BAbS19_I13660	-	SLT domain protein
1300	 55.39	0	1419213..1420019	-	268	189024568	-	BAbS19_I13670	-	Putative peptidoglycan binding domain 1
1301	 54.29	0	1420016..1420726	-	236	189024569	-	BAbS19_I13680	-	Heat shock protein DnaJ, N-terminal
1302	 59.01	0	1420846..1421250	-	134	189024570	-	BAbS19_I13690	-	Antifreeze protein, type I
1303	 59.47	0	1421554..1422387	+	277	189024571	-	BAbS19_I13700	-	Glycoside hydrolase, family 25
1304	 58.56	0	1422508..1423740	+	410	189024572	-	BAbS19_I13710	-	Putative peptidoglycan binding domain 1
1305	 58.87	0	1423802..1424737	+	311	189024573	-	BAbS19_I13720	-	Auxin Efflux Carrier
1306	 57.68	0	1425172..1426083	-	303	189024574	-	BAbS19_I13730	-	Methylenetetrahydrofolate reductase
1307	 60.14	0	1426129..1427154	-	341	189024575	-	BAbS19_I13740	-	transcriptional regulator, ArsR family
1308	 55.40	0	1427181..1427597	+	138	189024576	-	BAbS19_I13750	-	hypothetical protein
1309	 56.82	0	1427652..1428992	-	446	189024577	-	BAbS19_I13760	-	Alpha-ketoglutarate permease
1310	 55.79	0	1429413..1429982	-	189	189024578	-	BAbS19_I13770	-	Trans-aconitate methyltransferase
1311	 56.12	0	1430252..1431901	-	549	189024579	-	BAbS19_I13780	-	ATP/GTP-binding site motif A (P-loop)
1312	 58.33	0	1431981..1432100	-	39	189024580	-	BAbS19_I13790	-	hypothetical protein
1313	 57.14	0	1432397..1433341	+	314	189024581	-	BAbS19_I13800	-	Esterase/lipase/thioesterase
1314	 52.85	-1	1433430..1434044	+	204	189024582	-	BAbS19_I13810	-	hypothetical protein
1315	 57.13	0	1435179..1436426	+	415	189024583	-	BAbS19_I13840	-	Rieske 2Fe-2S family protein
1316	 59.25	0	1436460..1437578	+	372	189024584	-	BAbS19_I13850	-	NADH oxidoreductase, putative
1317	 55.86	0	1437581..1437802	-	73	189024585	-	BAbS19_I13860	-	PhnA protein
1318	 56.19	0	1437940..1438569	+	209	189024586	-	BAbS19_I13870	-	Isochorismatase hydrolase family
1319	 54.61	0	1438566..1439627	-	353	189024587	-	BAbS19_I13880	-	Protein of unknown function DUF475
1320	 53.93	-1	1439974..1440240	+	88	189024588	-	BAbS19_I13890	-	hypothetical protein
1321	 54.35	0	1440438..1441541	-	367	189024589	-	BAbS19_I13900	-	choloylglycine hydrolase family protein
1322	 54.35	0	1441817..1442620	+	267	189024590	-	BAbS19_I13910	-	hypothetical protein
1323	 60.17	0	1443820..1444173	+	117	189024591	-	BAbS19_I13920	-	hypothetical protein
1324	 56.89	0	1444334..1444906	-	190	189024592	-	BAbS19_I13930	-	hypothetical protein
1325	 55.56	0	1445286..1445636	+	116	189024593	-	BAbS19_I13940	-	Phage integrase
1326	 55.78	0	1446054..1446806	+	250	189024594	-	BAbS19_I13950	-	immunoreactive 28 kDa outer membrane protein
1327	 58.84	0	1446980..1447324	-	114	189024595	-	BAbS19_I13960	-	Antifreeze protein, type I
1328	 54.47	0	1447568..1448026	-	152	189024596	-	BAbS19_I13970	-	hypothetical protein
1329	 54.98	0	1448218..1448508	-	96	189024597	-	BAbS19_I13980	-	hypothetical protein
1330	 56.91	0	1448532..1450550	-	672	189024598	-	BAbS19_I13990	-	RNA polymerase sigma factor
1331	 61.64	+1	1451018..1452985	-	655	189024599	-	BAbS19_I14000	-	DNA primase
1332	 59.39	0	1453355..1455031	+	558	189024600	-	BAbS19_I14010	-	Na+/Pi-cotransporter
1333	 57.62	0	1455098..1455550	-	150	189024601	-	BAbS19_I14020	-	GatB/Yqey
1334	 60.70	0	1455930..1457153	+	407	189024602	-	BAbS19_I14030	-	carbamoyl-phosphate synthase small subunit
1335	 61.06	0	1457325..1458251	-	308	189024603	-	BAbS19_I14040	-	Neutral zinc metallopeptidase
1336	 54.14	0	1458368..1458886	-	172	189024604	-	BAbS19_I14050	-	hypothetical protein
1337	 56.81	0	1458957..1459676	+	239	189024605	-	BAbS19_I14060	-	hypothetical protein
1338	 60.42	0	1460006..1463494	+	1162	189024606	-	BAbS19_I14070	-	carbamoyl-phosphate synthase large subunit
1339	 58.47	0	1464211..1466076	-	621	189024607	-	BAbS19_I14080	-	ABC transporter
1340	 56.01	0	1466287..1466727	+	146	189024608	-	BAbS19_I14090	-	NUDIX hydrolase
1341	 58.57	0	1466920..1467129	+	69	189024609	-	BAbS19_I14100	-	Cold-shock DNA-binding domain protein
1342	 57.03	0	1467259..1467870	-	203	189024610	-	BAbS19_I14110	-	Glutathione S-transferase
1343	 58.27	0	1468120..1469322	+	400	189024611	-	BAbS19_I14120	-	aspartate aminotransferase
1344	 42.59	-2	1469632..1469739	+	35	189024612	-	BAbS19_I14130	-	hypothetical protein
1345	 57.17	0	1469791..1470696	-	301	189024613	-	BAbS19_I14140	-	Bacterial regulatory protein LysR
1346	 59.49	0	1470767..1471741	-	324	189024614	-	BAbS19_I14150	-	TrxB, thioredoxin reductase
1347	 57.42	0	1472198..1473463	+	421	189024615	-	BAbS19_I14160	-	Pyrokinin
1348	 58.81	0	1473721..1474191	+	156	189024616	-	BAbS19_I14170	-	Bacterial regulatory protein, AsnC family
1349	 57.57	0	1474198..1475076	-	292	189024617	-	BAbS19_I14180	-	Glycosyl transferase, group 1
1350	 55.06	0	1475269..1475742	-	157	189024618	-	BAbS19_I14190	-	transcription elongation factor GreA
1351	 54.83	0	1476011..1477066	-	351	189024619	-	BAbS19_I14200	-	hypothetical protein
1352	 48.92	-2	1477056..1477241	-	61	189024621	-	BAbS19_I14210	-	hypothetical protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.