IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1195	 56.32	0	1307094..1307924	-	276	189024463	-	BAbS19_I12600	-	Binding-protein-dependent transport systems inner membrane component
1196	 59.02	0	1307911..1308747	-	278	189024464	-	BAbS19_I12610	-	Binding-protein-dependent transport systems inner membrane component
1197	 55.52	0	1308904..1309908	-	334	189024465	-	BAbS19_I12620	-	sulfate ABC transporter, sulfate-binding protein, putative
1198	 51.97	-1	1310189..1310467	+	92	189024466	-	BAbS19_I12630	-	Prokaryotic diacylglycerol kinase
1199	 58.95	0	1310539..1312107	-	522	189024467	-	BAbS19_I12640	-	CBS domain protein
1200	 58.16	0	1312490..1313230	-	246	189024468	-	BAbS19_I12650	-	Putative membrane-associated alkaline phosphatase
1201	 53.52	-1	1314086..1314625	+	179	189024469	-	BAbS19_I12660	-	Calcium-binding EF-hand
1202	 54.37	0	1314759..1315181	-	140	189024470	-	BAbS19_I12670	-	RbsD or FucU transport
1203	 59.26	0	1315275..1316084	-	269	189024471	-	BAbS19_I12680	-	Short-chain dehydrogenase/reductase SDR
1204	 58.46	0	1316099..1316878	-	259	189024472	-	BAbS19_I12690	-	ATP/GTP-binding site motif A (P-loop)
1205	 59.68	0	1318305..1319234	-	309	189024473	-	BAbS19_I12720	-	Periplasmic binding protein/LacI transcriptional regulator
1206	 57.44	0	1319613..1320728	+	371	189024474	-	BAbS19_I12730	-	Oxidoreductase, N-terminal
1207	 62.16	+1	1320725..1321501	-	258	189024475	-	BAbS19_I12740	-	ATP/GTP-binding site motif A (P-loop)
1208	 62.08	+1	1321498..1322499	-	333	189024476	-	BAbS19_I12750	-	Metal chelate transport system permease protein
1209	 60.48	0	1322492..1323331	-	279	189024477	-	BAbS19_I12760	-	Periplasmic binding protein
1210	 56.58	0	1323345..1325207	-	620	189024478	-	BAbS19_I12770	-	TonB-dependent receptor protein
1211	 57.42	0	1325689..1326813	-	374	189024479	-	BAbS19_I12780	-	ABC transporter, family 2
1212	 56.05	0	1326815..1327615	-	266	189024480	-	BAbS19_I12790	-	ABC transporter ATP-binding protein
1213	 58.90	0	1327590..1329584	-	664	189024481	-	BAbS19_I12800	-	ABC transporter, ATP binding/permease protein
1214	 60.96	0	1329581..1330648	-	355	189024483	-	BAbS19_I12810	-	Gram-negative bacterial RTX secretion protein D
1215	 52.22	-1	1330628..1330807	+	59	189024482	-	BAbS19_I12820	-	hypothetical protein
1216	 54.96	0	1331194..1332423	-	409	189024484	-	BAbS19_I12830	-	Protein of unknown function DUF187
1217	 57.10	0	1333304..1333606	+	100	189024485	-	BAbS19_I12840	-	Urease, gamma subunit
1218	 58.13	0	1333655..1334134	+	159	189024486	-	BAbS19_I12850	-	Urease, beta subunit
1219	 59.23	0	1334174..1335895	+	573	189024487	-	BAbS19_I12860	-	UreC-2, urease, alpha subunit
1220	 58.55	0	1335943..1336521	+	192	189024488	-	BAbS19_I12870	-	Urease accessory protein UreE
1221	 58.88	0	1336518..1337249	+	243	189024489	-	BAbS19_I12880	-	Urease accessory protein UreF
1222	 56.34	0	1337265..1337903	+	212	189024490	-	BAbS19_I12890	-	Urease accessory protein UreG
1223	 57.92	0	1337903..1338817	+	304	189024491	-	BAbS19_I12900	-	Urease accessory protein UreD
1224	 60.19	0	1338827..1339876	+	349	189024492	-	BAbS19_I12910	-	Urea transporter
1225	 57.44	0	1339903..1340661	+	252	189024493	-	BAbS19_I12920	-	ATP-dependent DNA ligase
1226	 61.64	+1	1340681..1341316	+	211	189024494	-	BAbS19_I12930	-	Cobalamin (vitamin B12) biosynthesis CbiM protein
1227	 62.52	+1	1341313..1341939	+	208	189024495	-	BAbS19_I12940	-	hypothetical protein
1228	 60.13	0	1341936..1342700	+	254	189024496	-	BAbS19_I12950	-	Cobalt transport protein
1229	 57.22	0	1342697..1343416	+	239	189024497	-	BAbS19_I12960	-	ABC transporter
1230	 57.81	0	1343437..1344249	-	270	189024498	-	BAbS19_I12970	-	CrcB family protein
1231	 56.41	0	1344262..1344651	-	129	189024499	-	BAbS19_I12980	-	Camphor resistance CrcB protein
1232	 56.34	0	1344920..1345945	+	341	189024500	-	BAbS19_I12990	-	hypothetical protein
1233	 51.95	-1	1346078..1346512	-	144	189024501	-	BAbS19_I13000	-	hypothetical protein
1234	 47.83	-2	1346514..1346651	+	45	189024502	-	BAbS19_I13010	-	hypothetical protein
1235	 57.82	0	1346664..1347590	-	308	189024503	-	BAbS19_I13020	-	phenazine biosynthesis protein, PhzF family
1236	 58.88	0	1347695..1348426	-	243	189024504	-	BAbS19_I13030	-	NUDIX hydrolase
1237	 55.68	0	1348446..1349555	-	369	189024505	-	BAbS19_I13040	-	Endonuclease/exonuclease/phosphatase family
1238	 57.35	0	1349740..1350147	+	135	189024506	-	BAbS19_I13050	-	hypothetical protein
1239	 57.26	0	1350194..1351426	-	410	189024507	-	BAbS19_I13060	-	Aminotransferase, class I and II
1240	 58.24	0	1351862..1352881	-	339	189024508	-	BAbS19_I13070	-	Acetohydroxy acid isomeroreductase
1241	 59.97	0	1352937..1353578	-	213	189024509	-	BAbS19_I13080	-	Bacterial regulatory protein TetR, HTH motif
1242	 46.81	-2	1353636..1353776	+	46	189024510	-	BAbS19_I13090	-	hypothetical protein
1243	 58.28	0	1353787..1355742	-	651	189024511	-	BAbS19_I13100	-	K+ potassium transporter
1244	 57.23	0	1355885..1356043	-	52	189024512	-	BAbS19_I13110	-	hypothetical protein
1245	 59.65	0	1356112..1356852	-	246	189024513	-	BAbS19_I13120	-	Pyridoxal phosphate biosynthetic protein PdxJ
1246	 53.13	-1	1357152..1357550	+	132	189024514	-	BAbS19_I13130	-	hypothetical protein
1247	 57.84	0	1357551..1358717	-	388	189024515	-	BAbS19_I13140	-	ATP/GTP-binding site motif A (P-loop)
1248	 58.46	0	1358856..1359428	-	190	189024516	-	BAbS19_I13150	-	Acetolactate synthase, small subunit
1249	 58.50	0	1359447..1361270	-	607	189024517	-	BAbS19_I13160	-	acetolactate synthase III large subunit
1250	 59.59	0	1361518..1362450	-	310	189024518	-	BAbS19_I13170	-	tRNA isopentenyltransferase
1251	 60.56	0	1362468..1363367	+	299	189024519	-	BAbS19_I13180	-	Phosphoserine phosphatase SerB
1252	 59.22	0	1363408..1364589	-	393	189024520	-	BAbS19_I13190	-	hypothetical protein BruAb1_1388
1253	 58.67	0	1364719..1366293	-	524	189024521	-	BAbS19_I13200	-	serine protease Do, hypothetical
1254	 60.22	0	1366517..1366702	-	61	189024522	-	BAbS19_I13210	-	hypothetical protein
1255	 60.13	0	1366722..1367624	-	300	189024523	-	BAbS19_I13220	-	Band 7 protein
1256	 58.94	0	1367624..1368826	-	400	189024524	-	BAbS19_I13230	-	Band 7 protein
1257	 57.80	0	1368903..1369421	-	172	189024525	-	BAbS19_I13240	-	Dihydrofolate reductase
1258	 55.47	0	1369424..1370218	-	264	189024526	-	BAbS19_I13250	-	Thymidylate synthase
1259	 57.69	0	1370319..1370630	-	103	189024527	-	BAbS19_I13260	-	hypothetical protein
1260	 60.06	0	1371144..1372415	-	423	189024528	-	BAbS19_I13270	-	Drug resistance transporter Bcr/CflA subfamily
1261	 51.70	-1	1372432..1372578	-	48	189024529	-	BAbS19_I13280	-	hypothetical protein
1262	 56.62	0	1372809..1373435	+	208	189024530	-	BAbS19_I13290	-	Bacterial regulatory protein TetR, HTH motif
1263	 54.21	0	1373516..1374085	+	189	189024531	-	BAbS19_I13300	-	hypothetical protein
1264	 54.24	0	1374198..1374374	+	58	189024532	-	BAbS19_I13310	-	hypothetical protein
1265	 52.24	-1	1374466..1374666	+	66	189024533	-	BAbS19_I13320	-	hypothetical protein
1266	 58.72	0	1374663..1374989	+	108	189024534	-	BAbS19_I13330	-	hypothetical protein
1267	 60.12	0	1374943..1378686	-	1247	189024535	-	BAbS19_I13340	-	Alpha-isopropylmalate/homocitrate synthase
1268	 48.23	-2	1378741..1378881	-	46	189024536	-	BAbS19_I13350	-	hypothetical protein
1269	 59.70	0	1378878..1380284	-	468	189024537	-	BAbS19_I13360	-	FAD linked oxidase, C-terminal
1270	 60.78	0	1380309..1380818	-	169	189024538	-	BAbS19_I13370	-	hypothetical protein
1271	 60.35	0	1380938..1382014	+	358	189024539	-	BAbS19_I13380	-	serine/threonine protein kinase
1272	 59.37	0	1382073..1384649	+	858	189024540	-	BAbS19_I13390	-	UvrD/REP helicase
1273	 54.22	0	1384723..1385220	-	165	189024541	-	BAbS19_I13400	-	hypothetical protein
1274	 58.77	0	1385285..1385917	-	210	189024542	-	BAbS19_I13410	-	Bacterial transferase hexapeptide repeat
1275	 55.61	0	1386083..1386670	+	195	189024543	-	BAbS19_I13420	-	Electron transport protein SCO1/SenC
1276	 58.28	0	1386708..1387565	+	285	189024544	-	BAbS19_I13430	-	SAM (and some other nucleotide) binding motif
1277	 59.44	0	1387614..1389440	+	608	189024545	-	BAbS19_I13440	-	Metallopeptidase family M24
1278	 56.88	0	1389441..1390145	-	234	189024546	-	BAbS19_I13450	-	hypothetical protein
1279	 59.95	0	1390145..1392304	-	719	189024547	-	BAbS19_I13460	-	DNA ligase
1280	 62.26	+1	1392490..1394169	-	559	189024548	-	BAbS19_I13470	-	ATP/GTP-binding site motif A (P-loop)
1281	 56.48	0	1394182..1395045	-	287	189024549	-	BAbS19_I13480	-	TPR repeat-containing protein
1282	 56.33	0	1395452..1396312	-	286	189024550	-	BAbS19_I13490	-	UDP-3-0-acyl N-acetylglucosamine deacetylase
1283	 63.90	+1	1396852..1398552	-	566	189024551	-	BAbS19_I13500	-	Cell division protein FtsZ
1284	 60.62	0	1398649..1399971	-	440	189024552	-	BAbS19_I13510	-	Heat shock protein Hsp70
1285	 58.44	0	1399968..1400903	-	311	189024553	-	BAbS19_I13520	-	Cell division protein FTSQ
1286	 55.45	0	1400891..1401817	-	308	189024554	-	BAbS19_I13530	-	D-alanine--D-alanine ligase/VANA/B/C
1287	 61.09	0	1402060..1403028	-	322	189024555	-	BAbS19_I13540	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1288	 61.09	0	1403028..1404443	-	471	189024556	-	BAbS19_I13550	-	UDP-N-acetylmuramate--L-alanine ligase
1289	 61.84	+1	1404440..1405579	-	379	189024557	-	BAbS19_I13560	-	N-acetylglucosaminyl transferase
1290	 59.15	0	1405806..1406963	-	385	189024558	-	BAbS19_I13570	-	Cell cycle protein
1291	 60.54	0	1406963..1408366	-	467	189024559	-	BAbS19_I13580	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1292	 57.25	0	1408379..1409461	-	360	189024560	-	BAbS19_I13590	-	Glycosyl transferase, family 4
1293	 58.99	0	1409488..1410933	-	481	189024561	-	BAbS19_I13600	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1294	 59.92	0	1410930..1412396	-	488	189024562	-	BAbS19_I13610	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.