IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1146	 45.39	-2	1250717..1250857	+	46	189024414	-	BAbS19_I12050	-	hypothetical protein
1147	 61.09	0	1250991..1251977	-	328	189024415	-	BAbS19_I12060	-	GlpX protein
1148	 58.86	0	1252370..1253689	-	439	189024416	-	BAbS19_I12070	-	Homoserine dehydrogenase
1149	 58.56	0	1253825..1255045	-	406	189024417	-	BAbS19_I12080	-	Aminotransferase, class-I
1150	 62.36	+1	1255176..1255523	-	115	189024418	-	BAbS19_I12090	-	hypothetical protein
1151	 57.58	0	1256060..1257292	+	410	189024419	-	BAbS19_I12100	-	hypothetical protein
1152	 55.79	0	1257902..1258186	+	94	189024420	-	BAbS19_I12110	-	hypothetical protein
1153	 58.02	0	1258509..1259225	+	238	189024421	-	BAbS19_I12120	-	Sugar fermentation stimulation protein
1154	 57.37	0	1259225..1260052	+	275	189024422	-	BAbS19_I12130	-	Metallopeptidase family M24
1155	 60.40	0	1260108..1260857	+	249	189024423	-	BAbS19_I12140	-	DNA repair protein RadC
1156	 58.22	0	1261059..1261697	+	212	189024424	-	BAbS19_I12150	-	hypothetical protein
1157	 61.28	+1	1261986..1263191	-	401	189024425	-	BAbS19_I12160	-	CobL, precorrin-6Y C5,15-methyltransferase
1158	 58.95	0	1263265..1264560	+	431	189024426	-	BAbS19_I12170	-	nitrite reductase family protein
1159	 62.04	+1	1264570..1265196	+	208	189024427	-	BAbS19_I12180	-	Precorrin-8X methylmutase CbiC/CobH
1160	 58.78	0	1265196..1265930	+	244	189024428	-	BAbS19_I12190	-	precorrin-2 methyltransferase
1161	 60.65	0	1265927..1267621	+	564	189024429	-	BAbS19_I12200	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
1162	 61.97	+1	1267677..1268144	-	155	189024430	-	BAbS19_I12210	-	hypothetical protein
1163	 51.85	-1	1268269..1268511	-	80	189024431	-	BAbS19_I12220	-	phospholipase/carboxylesterase family protein
1164	 55.99	0	1268557..1269165	-	202	189024432	-	BAbS19_I12230	-	phospholipase/carboxylesterase family protein
1165	 58.84	0	1269735..1270922	+	395	189024433	-	BAbS19_I12260	-	Leu/Ile/Val-binding protein family
1166	 59.24	0	1270908..1271903	-	331	189024434	-	BAbS19_I12270	-	Cobalamin biosynthesis protein CbiB
1167	 60.66	0	1271928..1272926	-	332	189024435	-	BAbS19_I12280	-	Aminotransferase, class-I
1168	 60.49	0	1272923..1274233	-	436	189024436	-	BAbS19_I12290	-	cobyrinic acid a,c-diamide synthase
1169	 61.89	+1	1274230..1275108	-	292	189024437	-	BAbS19_I12300	-	Uroporphyrin-III C-methyltransferase
1170	 60.07	0	1275169..1276275	+	368	189024438	-	BAbS19_I12310	-	Cobalamin (vitamin B12) biosynthesis CbiD protein
1171	 61.31	+1	1276262..1277008	+	248	189024439	-	BAbS19_I12320	-	Precorrin-6x reductase CbiJ/CobK
1172	 58.23	0	1276997..1277755	-	252	189024440	-	BAbS19_I12330	-	CobM, precorrin-4 C11-methyltransferase
1173	 58.59	0	1277815..1278210	-	131	189024441	-	BAbS19_I12340	-	Antifreeze protein, type I
1174	 54.81	0	1278203..1278649	-	148	189024442	-	BAbS19_I12350	-	hypothetical protein
1175	 59.41	0	1278809..1279594	+	261	189024443	-	BAbS19_I12360	-	Protein of unknown function DUF81
1176	 59.82	0	1279591..1279926	-	111	189024444	-	BAbS19_I12370	-	hypothetical protein
1177	 56.03	0	1279929..1280567	-	212	189024445	-	BAbS19_I12380	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1178	 62.39	+1	1280560..1284351	-	1263	189024446	-	BAbS19_I12390	-	CobN/magnesium chelatase
1179	 57.43	0	1284351..1285400	-	349	189024447	-	BAbS19_I12400	-	Dynamin
1180	 60.15	0	1285404..1285925	-	173	189024448	-	BAbS19_I12410	-	ATP/GTP-binding site motif A (P-loop)
1181	 60.96	0	1285931..1286578	-	215	189024449	-	BAbS19_I12420	-	hypothetical protein
1182	 57.14	0	1286737..1286925	-	62	189024450	-	BAbS19_I12430	-	hypothetical protein
1183	 60.67	0	1287239..1288690	-	483	189024451	-	BAbS19_I12440	-	Cobyrinic acid a,c-diamide synthase
1184	 57.69	0	1288966..1290123	+	385	189024452	-	BAbS19_I12450	-	Acyl-COA dehydrogenase, short-chain specific
1185	 60.61	0	1290155..1291045	+	296	189024453	-	BAbS19_I12460	-	MmsB, 3-hydroxyisobutyrate dehydrogenase
1186	 45.83	-2	1291281..1291448	-	55	189024454	-	BAbS19_I12470	-	hypothetical protein
1187	 58.78	0	1291755..1292705	-	316	189024455	-	BAbS19_I12480	-	Transcriptional regulatory protein, LYSR family
1188	 57.16	0	1292995..1294119	+	374	189024456	-	BAbS19_I12490	-	Transcriptional regulator, ARAC family
1189	 55.33	0	1297032..1297322	-	96	189024457	-	BAbS19_I12520	-	hypothetical protein
1190	 57.35	0	1297429..1300005	-	858	189024458	-	BAbS19_I12530	-	Mechanosensitive (MS) ion channel
1191	 59.62	0	1300195..1300662	+	155	189024459	-	BAbS19_I12540	-	hypothetical protein
1192	 59.34	0	1300771..1303308	+	845	189024460	-	BAbS19_I12550	-	protein-export membrane protein, SecD/SecF family
1193	 59.46	0	1303386..1305245	+	619	189024461	-	BAbS19_I12560	-	potassium efflux system family protein
1194	 55.35	0	1305245..1306216	+	323	189024462	-	BAbS19_I12570	-	low PH-induced protein A
1195	 56.32	0	1307094..1307924	-	276	189024463	-	BAbS19_I12600	-	Binding-protein-dependent transport systems inner membrane component
1196	 59.02	0	1307911..1308747	-	278	189024464	-	BAbS19_I12610	-	Binding-protein-dependent transport systems inner membrane component
1197	 55.52	0	1308904..1309908	-	334	189024465	-	BAbS19_I12620	-	sulfate ABC transporter, sulfate-binding protein, putative
1198	 51.97	-1	1310189..1310467	+	92	189024466	-	BAbS19_I12630	-	Prokaryotic diacylglycerol kinase
1199	 58.95	0	1310539..1312107	-	522	189024467	-	BAbS19_I12640	-	CBS domain protein
1200	 58.16	0	1312490..1313230	-	246	189024468	-	BAbS19_I12650	-	Putative membrane-associated alkaline phosphatase
1201	 53.52	-1	1314086..1314625	+	179	189024469	-	BAbS19_I12660	-	Calcium-binding EF-hand
1202	 54.37	0	1314759..1315181	-	140	189024470	-	BAbS19_I12670	-	RbsD or FucU transport
1203	 59.26	0	1315275..1316084	-	269	189024471	-	BAbS19_I12680	-	Short-chain dehydrogenase/reductase SDR
1204	 58.46	0	1316099..1316878	-	259	189024472	-	BAbS19_I12690	-	ATP/GTP-binding site motif A (P-loop)
1205	 59.68	0	1318305..1319234	-	309	189024473	-	BAbS19_I12720	-	Periplasmic binding protein/LacI transcriptional regulator
1206	 57.44	0	1319613..1320728	+	371	189024474	-	BAbS19_I12730	-	Oxidoreductase, N-terminal
1207	 62.16	+1	1320725..1321501	-	258	189024475	-	BAbS19_I12740	-	ATP/GTP-binding site motif A (P-loop)
1208	 62.08	+1	1321498..1322499	-	333	189024476	-	BAbS19_I12750	-	Metal chelate transport system permease protein
1209	 60.48	0	1322492..1323331	-	279	189024477	-	BAbS19_I12760	-	Periplasmic binding protein
1210	 56.58	0	1323345..1325207	-	620	189024478	-	BAbS19_I12770	-	TonB-dependent receptor protein
1211	 57.42	0	1325689..1326813	-	374	189024479	-	BAbS19_I12780	-	ABC transporter, family 2
1212	 56.05	0	1326815..1327615	-	266	189024480	-	BAbS19_I12790	-	ABC transporter ATP-binding protein
1213	 58.90	0	1327590..1329584	-	664	189024481	-	BAbS19_I12800	-	ABC transporter, ATP binding/permease protein
1214	 60.96	0	1329581..1330648	-	355	189024483	-	BAbS19_I12810	-	Gram-negative bacterial RTX secretion protein D
1215	 52.22	-1	1330628..1330807	+	59	189024482	-	BAbS19_I12820	-	hypothetical protein
1216	 54.96	0	1331194..1332423	-	409	189024484	-	BAbS19_I12830	-	Protein of unknown function DUF187
1217	 57.10	0	1333304..1333606	+	100	189024485	-	BAbS19_I12840	-	Urease, gamma subunit
1218	 58.13	0	1333655..1334134	+	159	189024486	-	BAbS19_I12850	-	Urease, beta subunit
1219	 59.23	0	1334174..1335895	+	573	189024487	-	BAbS19_I12860	-	UreC-2, urease, alpha subunit
1220	 58.55	0	1335943..1336521	+	192	189024488	-	BAbS19_I12870	-	Urease accessory protein UreE
1221	 58.88	0	1336518..1337249	+	243	189024489	-	BAbS19_I12880	-	Urease accessory protein UreF
1222	 56.34	0	1337265..1337903	+	212	189024490	-	BAbS19_I12890	-	Urease accessory protein UreG
1223	 57.92	0	1337903..1338817	+	304	189024491	-	BAbS19_I12900	-	Urease accessory protein UreD
1224	 60.19	0	1338827..1339876	+	349	189024492	-	BAbS19_I12910	-	Urea transporter
1225	 57.44	0	1339903..1340661	+	252	189024493	-	BAbS19_I12920	-	ATP-dependent DNA ligase
1226	 61.64	+1	1340681..1341316	+	211	189024494	-	BAbS19_I12930	-	Cobalamin (vitamin B12) biosynthesis CbiM protein
1227	 62.52	+1	1341313..1341939	+	208	189024495	-	BAbS19_I12940	-	hypothetical protein
1228	 60.13	0	1341936..1342700	+	254	189024496	-	BAbS19_I12950	-	Cobalt transport protein
1229	 57.22	0	1342697..1343416	+	239	189024497	-	BAbS19_I12960	-	ABC transporter
1230	 57.81	0	1343437..1344249	-	270	189024498	-	BAbS19_I12970	-	CrcB family protein
1231	 56.41	0	1344262..1344651	-	129	189024499	-	BAbS19_I12980	-	Camphor resistance CrcB protein
1232	 56.34	0	1344920..1345945	+	341	189024500	-	BAbS19_I12990	-	hypothetical protein
1233	 51.95	-1	1346078..1346512	-	144	189024501	-	BAbS19_I13000	-	hypothetical protein
1234	 47.83	-2	1346514..1346651	+	45	189024502	-	BAbS19_I13010	-	hypothetical protein
1235	 57.82	0	1346664..1347590	-	308	189024503	-	BAbS19_I13020	-	phenazine biosynthesis protein, PhzF family
1236	 58.88	0	1347695..1348426	-	243	189024504	-	BAbS19_I13030	-	NUDIX hydrolase
1237	 55.68	0	1348446..1349555	-	369	189024505	-	BAbS19_I13040	-	Endonuclease/exonuclease/phosphatase family
1238	 57.35	0	1349740..1350147	+	135	189024506	-	BAbS19_I13050	-	hypothetical protein
1239	 57.26	0	1350194..1351426	-	410	189024507	-	BAbS19_I13060	-	Aminotransferase, class I and II
1240	 58.24	0	1351862..1352881	-	339	189024508	-	BAbS19_I13070	-	Acetohydroxy acid isomeroreductase
1241	 59.97	0	1352937..1353578	-	213	189024509	-	BAbS19_I13080	-	Bacterial regulatory protein TetR, HTH motif
1242	 46.81	-2	1353636..1353776	+	46	189024510	-	BAbS19_I13090	-	hypothetical protein
1243	 58.28	0	1353787..1355742	-	651	189024511	-	BAbS19_I13100	-	K+ potassium transporter
1244	 57.23	0	1355885..1356043	-	52	189024512	-	BAbS19_I13110	-	hypothetical protein
1245	 59.65	0	1356112..1356852	-	246	189024513	-	BAbS19_I13120	-	Pyridoxal phosphate biosynthetic protein PdxJ
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.