IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1048	 53.86	-1	1158819..1159661	-	280	189024316	-	BAbS19_I11030	-	ATP/GTP-binding site motif A (P-loop)
1049	 58.06	0	1159805..1160269	+	154	189024317	-	BAbS19_I11040	-	Endoribonuclease L-PSP
1050	 54.88	0	1161065..1162252	+	395	189024318	-	BAbS19_I11070	-	Protein of unknown function DUF482
1051	 53.43	-1	1162324..1162746	+	140	189024319	-	BAbS19_I11080	-	Histidine triad (HIT) protein
1052	 57.62	0	1162853..1165327	-	824	189024320	-	BAbS19_I11090	-	ATP-dependent CLP protease ATP-binding subunit CLPA
1053	 52.42	-1	1165334..1165684	-	116	189024321	-	BAbS19_I11100	-	Protein of unknown function DUF174
1054	 61.54	+1	1166203..1167588	+	461	189024322	-	BAbS19_I11110	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
1055	 61.22	+1	1167668..1167961	+	97	189024323	-	BAbS19_I11120	-	hypothetical protein
1056	 58.68	0	1168075..1168512	-	145	189024324	-	BAbS19_I11130	-	hypothetical protein
1057	 59.77	0	1168601..1169920	-	439	189024325	-	BAbS19_I11140	-	L-serine dehydratase, iron-sulfur-dependent, single chain form
1058	 50.79	-1	1170203..1170328	-	41	189024326	-	BAbS19_I11150	-	hypothetical protein
1059	 55.97	0	1170527..1171321	-	264	189024327	-	BAbS19_I11160	-	Protein of unknown function DUF218
1060	 58.02	0	1171496..1172467	+	323	189024328	-	BAbS19_I11170	-	hypothetical protein
1061	 56.07	0	1172478..1172864	-	128	189024329	-	BAbS19_I11180	-	Bacterial regulatory protein, MerR family
1062	 54.64	0	1173102..1173467	+	121	189024330	-	BAbS19_I11190	-	hypothetical protein
1063	 57.76	0	1173482..1173874	+	130	189024331	-	BAbS19_I11200	-	hypothetical protein
1064	 55.56	0	1173899..1174213	+	104	189024332	-	BAbS19_I11210	-	hypothetical protein
1065	 57.69	0	1174658..1175125	+	155	189024333	-	BAbS19_I11220	-	GTP cyclohydrolase I
1066	 59.32	0	1175256..1175432	+	58	189024334	-	BAbS19_I11230	-	hypothetical protein
1067	 54.14	0	1175464..1176006	+	180	189024335	-	BAbS19_I11240	-	hypothetical protein
1068	 58.17	0	1176009..1177421	-	470	189024336	-	BAbS19_I11250	-	Helix-turn-helix motif
1069	 58.71	0	1177572..1179104	+	510	189024337	-	BAbS19_I11260	-	Carboxyl transferase family
1070	 59.63	0	1179189..1181192	+	667	189024338	-	BAbS19_I11270	-	Propionyl-COA carboxylase alpha chain
1071	 58.91	0	1181253..1183391	+	712	189024339	-	BAbS19_I11280	-	methylmalonyl-CoA mutase
1072	 55.92	0	1183498..1183860	-	120	189024340	-	BAbS19_I11290	-	hypothetical protein
1073	 57.15	0	1184047..1186095	-	682	189024341	-	BAbS19_I11300	-	hypothetical protein
1074	 51.70	-1	1186136..1186282	-	48	189024342	-	BAbS19_I11310	-	hypothetical protein
1075	 57.88	0	1186332..1187321	-	329	189024343	-	BAbS19_I11320	-	Tetracycline resistance protein TetB
1076	 57.55	0	1187467..1188300	-	277	189024344	-	BAbS19_I11330	-	Asp/Glu racemase
1077	 57.52	0	1188297..1189127	-	276	189024345	-	BAbS19_I11340	-	tRNA/rRNA methyltransferase (SpoU)
1078	 58.29	0	1189307..1189891	+	194	189024346	-	BAbS19_I11350	-	Intracellular protease PfpI
1079	 57.91	0	1189980..1190390	+	136	189024347	-	BAbS19_I11360	-	hypothetical protein
1080	 57.20	0	1190518..1191732	+	404	189024348	-	BAbS19_I11370	-	Isocitrate/isopropylmalate dehydrogenase
1081	 58.09	0	1191954..1193399	+	481	189024349	-	BAbS19_I11380	-	Alkaline phosphatase
1082	 58.77	0	1193551..1196208	-	885	189024350	-	BAbS19_I11390	-	Alanyl-tRNA synthetase, class Iic
1083	 57.00	0	1196601..1197686	-	361	189024351	-	BAbS19_I11400	-	RecA bacterial DNA recombination protein
1084	 49.21	-2	1197856..1197981	-	41	189024352	-	BAbS19_I11410	-	hypothetical protein
1085	 59.13	0	1198017..1198679	-	220	189024353	-	BAbS19_I11420	-	Bacterial outer membrane protein
1086	 55.90	0	1198766..1199350	-	194	189024354	-	BAbS19_I11430	-	transcriptional regulatory protein
1087	 59.89	0	1199474..1200787	-	437	189024355	-	BAbS19_I11440	-	ATPase, AAA family
1088	 59.16	0	1200934..1202358	-	474	189024356	-	BAbS19_I11450	-	Serine protease, V8 family
1089	 58.04	0	1202638..1203066	-	142	189024357	-	BAbS19_I11460	-	Ribosomal protein L17
1090	 57.10	0	1203228..1204241	-	337	189024358	-	BAbS19_I11470	-	RNA polymerase, alpha chain, bacterial and organelle
1091	 62.05	+1	1204357..1204746	-	129	189024359	-	BAbS19_I11480	-	Ribosomal protein S11
1092	 56.91	0	1204874..1205242	-	122	189024360	-	BAbS19_I11490	-	Ribosomal protein S13
1093	 58.80	0	1205551..1206135	-	194	189024361	-	BAbS19_I11500	-	Adenylate kinase, subfamily
1094	 55.11	0	1206132..1207472	-	446	189024362	-	BAbS19_I11510	-	C-5 cytosine-specific DNA methylase
1095	 59.45	0	1207633..1208103	-	156	189024363	-	BAbS19_I11520	-	Ribosomal protein L15
1096	 58.59	0	1208124..1208321	-	65	189024364	-	BAbS19_I11530	-	Ribosomal protein L30
1097	 60.43	0	1208439..1208999	-	186	189024365	-	BAbS19_I11540	-	30S ribosomal protein S5
1098	 61.98	+1	1209041..1209403	-	120	189024366	-	BAbS19_I11550	-	Ribosomal protein L18
1099	 57.49	0	1209416..1209949	-	177	189024367	-	BAbS19_I11560	-	Ribosomal protein L6
1100	 57.89	0	1209988..1210386	-	132	189024368	-	BAbS19_I11570	-	Ribosomal protein S8
1101	 57.84	0	1210397..1210702	-	101	189024369	-	BAbS19_I11580	-	30S ribosomal protein S14
1102	 54.66	0	1210730..1211287	-	185	189024370	-	BAbS19_I11590	-	50S ribosomal protein L5
1103	 57.05	0	1211280..1211591	-	103	189024371	-	BAbS19_I11600	-	Ribosomal protein L24
1104	 54.74	0	1211604..1211972	-	122	189024372	-	BAbS19_I11610	-	Ribosomal protein L14b/L23e
1105	 53.50	-1	1212041..1212283	-	80	189024373	-	BAbS19_I11620	-	Ribosomal protein S17
1106	 58.21	0	1212296..1212496	-	66	189024374	-	BAbS19_I11630	-	Ribosomal protein L29
1107	 58.21	0	1212509..1212922	-	137	189024375	-	BAbS19_I11640	-	Ribosomal protein L16
1108	 57.38	0	1212961..1213671	-	236	189024376	-	BAbS19_I11650	-	Ribosomal protein S3
1109	 58.72	0	1213671..1214060	-	129	189024377	-	BAbS19_I11660	-	50S ribosomal protein L22
1110	 54.48	0	1214063..1214341	-	92	189024378	-	BAbS19_I11670	-	Ribosomal protein S19/S15
1111	 59.83	0	1214357..1215190	-	277	189024379	-	BAbS19_I11680	-	Ribosomal protein L2
1112	 57.14	0	1215212..1215505	-	97	189024380	-	BAbS19_I11690	-	Ribosomal L23 protein
1113	 60.55	0	1215502..1216122	-	206	189024381	-	BAbS19_I11700	-	Ribosomal protein L4/L1e
1114	 58.54	0	1216122..1216835	-	237	189024382	-	BAbS19_I11710	-	Ribosomal protein L3
1115	 57.28	0	1216865..1217173	-	102	189024383	-	BAbS19_I11720	-	Ribosomal protein S10
1116	 58.84	0	1217234..1218409	-	391	189024384	-	BAbS19_I11730	-	elongation factor Tu
1117	 56.98	0	1218473..1220557	-	694	189024385	-	BAbS19_I11740	-	elongation factor EF-2
1118	 57.32	0	1220588..1221058	-	156	189024386	-	BAbS19_I11750	-	Ribosomal protein S7
1119	 57.26	0	1221125..1221496	-	123	189024387	-	BAbS19_I11760	-	Ribosomal protein S12
1120	 54.01	0	1221976..1222299	+	107	189024388	-	BAbS19_I11770	-	hypothetical protein
1121	 57.93	0	1222406..1226608	-	1400	189024389	-	BAbS19_I11780	-	RNA polymerase, alpha subunit
1122	 57.72	0	1226757..1230890	-	1377	189024390	-	BAbS19_I11790	-	DNA-directed RNA polymerase beta subunit
1123	 59.20	0	1231098..1231472	-	124	189024391	-	BAbS19_I11800	-	Ribosomal protein L7/L12
1124	 58.57	0	1231524..1232042	-	172	189024392	-	BAbS19_I11810	-	50S ribosomal protein L10
1125	 56.98	0	1232433..1233134	-	233	189024393	-	BAbS19_I11820	-	Ribosomal protein L1
1126	 58.04	0	1233139..1233567	-	142	189024394	-	BAbS19_I11830	-	Ribosomal protein L11
1127	 52.27	-1	1233770..1234297	-	175	189024395	-	BAbS19_I11840	-	Bacterial transcription antitermination protein NusG
1128	 53.73	-1	1234321..1234521	-	66	189024396	-	BAbS19_I11850	-	Protein secE/sec61-gamma protein
1129	 58.93	0	1235195..1236370	-	391	189024397	-	BAbS19_I11860	-	elongation factor Tu
1130	 61.09	0	1237001..1237861	+	286	189024398	-	BAbS19_I11870	-	RNA methyltransferase, TrmH family, group 3
1131	 54.63	0	1237922..1238353	-	143	189024399	-	BAbS19_I11880	-	CBS domain protein
1132	 57.61	0	1238524..1239252	-	242	189024400	-	BAbS19_I11890	-	Rhomboid-like protein
1133	 58.57	0	1239644..1240285	+	213	189024401	-	BAbS19_I11900	-	hypothetical protein
1134	 59.41	0	1240529..1241134	+	201	189024402	-	BAbS19_I11910	-	hypothetical protein
1135	 57.58	0	1241213..1241740	-	175	189024403	-	BAbS19_I11920	-	Bacterial transferase hexapeptide repeat
1136	 48.31	-2	1242011..1242217	-	68	189024404	-	BAbS19_I11930	-	hypothetical protein
1137	 57.94	0	1242513..1243337	-	274	189024405	-	BAbS19_I11940	-	CysE, serine acetyltransferase
1138	 50.41	-1	1243353..1243475	+	40	189024406	-	BAbS19_I11950	-	hypothetical protein
1139	 58.24	0	1243512..1244282	-	256	189024407	-	BAbS19_I11960	-	hydrolase, alpha/beta hydrolase fold family
1140	 54.37	0	1244316..1244795	-	159	189024408	-	BAbS19_I11970	-	Protein of unknown function DUF192
1141	 59.79	0	1245169..1245750	-	193	189024409	-	BAbS19_I11980	-	Cold-shock DNA-binding domain protein
1142	 44.20	-2	1245874..1246011	-	45	189024410	-	BAbS19_I11990	-	hypothetical protein
1143	 58.50	0	1246113..1246553	+	146	189024411	-	BAbS19_I12000	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
1144	 61.57	+1	1247793..1249577	-	594	189024412	-	BAbS19_I12030	-	Phosphoesterase, RecJ-like protein
1145	 53.58	-1	1249627..1250688	-	353	189024413	-	BAbS19_I12040	-	D-alanine--D-alanine ligase/VANA/B/C
1146	 45.39	-2	1250717..1250857	+	46	189024414	-	BAbS19_I12050	-	hypothetical protein
1147	 61.09	0	1250991..1251977	-	328	189024415	-	BAbS19_I12060	-	GlpX protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.