IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
992	 60.51	0	1096343..1096618	-	91	189024260	-	BAbS19_I10470	-	Histone-like bacterial DNA-binding protein
993	 56.79	0	1096799..1099237	-	812	189024261	-	BAbS19_I10480	-	Lon, ATP-dependent protease La
994	 55.00	0	1099558..1099677	+	39	189024262	-	BAbS19_I10490	-	hypothetical protein
995	 56.31	0	1099669..1100943	-	424	189024263	-	BAbS19_I10500	-	ATP-dependent protease ATP-binding subunit
996	 56.51	0	1101325..1101954	-	209	189024264	-	BAbS19_I10510	-	Clp protease
997	 59.55	0	1102059..1103477	-	472	189024265	-	BAbS19_I10520	-	GTP1/OBG
998	 45.57	-2	1103668..1103904	-	78	189024266	-	BAbS19_I10530	-	Host factor Hfq
999	 51.34	-1	1104133..1104876	-	247	189024267	-	BAbS19_I10540	-	hypothetical protein
1000	 56.28	0	1105012..1106388	-	458	189024268	-	BAbS19_I10550	-	TrkA-N:TrkA potassium uptake protein
1001	 60.21	0	1106413..1107774	-	453	189024269	-	BAbS19_I10560	-	Nitrogen assimilation regulatory protein NTRX
1002	 57.47	0	1107776..1110058	-	760	189024270	-	BAbS19_I10570	-	nitrogen regulation protein NtrY
1003	 59.42	0	1110191..1111666	-	491	189024271	-	BAbS19_I10580	-	nitrogen regulation protein NtrC
1004	 59.67	0	1111663..1112805	-	380	189024272	-	BAbS19_I10590	-	NtrB, nitrogen regulation protein NtrB
1005	 58.68	0	1112805..1113806	-	333	189024273	-	BAbS19_I10600	-	nitrogen regulation protein NifR3
1006	 58.18	0	1113830..1115173	+	447	189024274	-	BAbS19_I10610	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1007	 59.24	0	1115170..1115667	+	165	189024275	-	BAbS19_I10620	-	CinA, C-terminal
1008	 57.39	0	1115744..1116562	+	272	189024276	-	BAbS19_I10630	-	Glucose 1-dehydrogenase II
1009	 53.16	-1	1116544..1117002	-	152	189024277	-	BAbS19_I10640	-	Hypothetical Cytosolic Protein
1010	 56.45	0	1117008..1117976	-	322	189024278	-	BAbS19_I10650	-	Lipoate synthase
1011	 64.65	+1	1118086..1118283	-	65	189024279	-	BAbS19_I10660	-	hypothetical protein
1012	 58.95	0	1118366..1119829	-	487	189024280	-	BAbS19_I10670	-	dihydrolipoamide dehydrogenase
1013	 59.67	0	1119912..1121255	-	447	189024281	-	BAbS19_I10680	-	AceF, pyruvate dehydrogenase complex, E2 component
1014	 57.58	0	1121273..1122658	-	461	189024282	-	BAbS19_I10690	-	dihydrolipoamide acetyltransferase
1015	 55.91	0	1122677..1123717	-	346	189024283	-	BAbS19_I10700	-	Dehydrogenase, E1 component
1016	 49.70	-2	1123856..1124185	-	109	189024284	-	BAbS19_I10710	-	Septum formation initiator
1017	 49.66	-2	1124457..1125038	-	193	189024285	-	BAbS19_I10720	-	hypothetical protein BruAb1_1137
1018	 57.51	0	1125375..1126652	-	425	189024286	-	BAbS19_I10730	-	Enolase
1019	 57.07	0	1126839..1127672	-	277	189024287	-	BAbS19_I10740	-	2-dehydro-3-deoxyphosphooctonate aldolase
1020	 55.56	0	1127778..1129406	-	542	189024288	-	BAbS19_I10750	-	Glutamine amidotransferase class-I
1021	 57.29	0	1129677..1130369	-	230	189024289	-	BAbS19_I10760	-	ErfK/YbiS/YcfS/YnhG
1022	 63.53	+1	1130623..1131069	-	148	189024290	-	BAbS19_I10770	-	Preprotein translocase SecG subunit
1023	 59.61	0	1131169..1131933	-	254	189024291	-	BAbS19_I10780	-	Triosephosphate isomerase
1024	 59.25	0	1132152..1134038	+	628	189024292	-	BAbS19_I10790	-	peptidyl-prolyl cis-trans isomerase D
1025	 61.76	+1	1134053..1135072	+	339	189024293	-	BAbS19_I10800	-	Glycosyl transferase, family
1026	 58.24	0	1135089..1135895	+	268	189024294	-	BAbS19_I10810	-	Indole-3-glycerol phosphate synthase
1027	 60.44	0	1135892..1136389	+	165	189024295	-	BAbS19_I10820	-	Molybdopterin cofactor biosynthesis protein MoaC
1028	 60.82	0	1136485..1137699	+	404	189024296	-	BAbS19_I10830	-	MoeA, molybdopterin biosynthesis protein MoeA
1029	 57.68	0	1137947..1138669	+	240	189024297	-	BAbS19_I10840	-	Peptidase family S24
1030	 57.49	0	1138663..1141212	-	849	189024298	-	BAbS19_I10850	-	ComEC/Rec2-related protein
1031	 53.67	-1	1141226..1141402	-	58	189024299	-	BAbS19_I10860	-	hypothetical protein
1032	 60.06	0	1141415..1142836	+	473	189024300	-	BAbS19_I10870	-	glutamyl-tRNA synthetase
1033	 57.15	0	1143065..1144357	+	430	189024301	-	BAbS19_I10880	-	Citrate synthase
1034	 57.83	0	1144530..1145717	-	395	189024302	-	BAbS19_I10890	-	Glycosyl transferase, family 19
1035	 58.36	0	1145714..1146616	-	300	189024303	-	BAbS19_I10900	-	hypothetical protein
1036	 57.47	0	1146597..1147433	-	278	189024304	-	BAbS19_I10910	-	Bacterial transferase hexapeptide repeat
1037	 53.80	-1	1147442..1147915	-	157	189024305	-	BAbS19_I10920	-	Thioesterase superfamily
1038	 58.43	0	1147908..1148963	-	351	189024306	-	BAbS19_I10930	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1039	 54.43	0	1149017..1151362	-	781	189024307	-	BAbS19_I10940	-	Bacterial surface antigen (D15)
1040	 57.11	0	1151698..1152837	-	379	189024308	-	BAbS19_I10950	-	membrane-associated zinc metalloprotease, putative
1041	 58.67	0	1152904..1153716	-	270	189024309	-	BAbS19_I10960	-	Phosphatidate cytidylyltransferase
1042	 59.74	0	1153820..1154584	-	254	189024310	-	BAbS19_I10970	-	Di-trans-poly-cis-decaprenylcistransferase
1043	 57.93	0	1154629..1155189	-	186	189024311	-	BAbS19_I10980	-	Ribosome recycling factor
1044	 57.64	0	1155225..1156055	-	276	189024312	-	BAbS19_I10990	-	Aspartate/glutamate/uridylate kinase
1045	 59.48	0	1156114..1157031	-	305	189024313	-	BAbS19_I11000	-	Elongation factor Ts
1046	 59.27	0	1157221..1157991	-	256	189024314	-	BAbS19_I11010	-	Ribosomal protein S2
1047	 52.72	-1	1158285..1158707	-	140	189024315	-	BAbS19_I11020	-	hypothetical protein
1048	 53.86	-1	1158819..1159661	-	280	189024316	-	BAbS19_I11030	-	ATP/GTP-binding site motif A (P-loop)
1049	 58.06	0	1159805..1160269	+	154	189024317	-	BAbS19_I11040	-	Endoribonuclease L-PSP
1050	 54.88	0	1161065..1162252	+	395	189024318	-	BAbS19_I11070	-	Protein of unknown function DUF482
1051	 53.43	-1	1162324..1162746	+	140	189024319	-	BAbS19_I11080	-	Histidine triad (HIT) protein
1052	 57.62	0	1162853..1165327	-	824	189024320	-	BAbS19_I11090	-	ATP-dependent CLP protease ATP-binding subunit CLPA
1053	 52.42	-1	1165334..1165684	-	116	189024321	-	BAbS19_I11100	-	Protein of unknown function DUF174
1054	 61.54	+1	1166203..1167588	+	461	189024322	-	BAbS19_I11110	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
1055	 61.22	+1	1167668..1167961	+	97	189024323	-	BAbS19_I11120	-	hypothetical protein
1056	 58.68	0	1168075..1168512	-	145	189024324	-	BAbS19_I11130	-	hypothetical protein
1057	 59.77	0	1168601..1169920	-	439	189024325	-	BAbS19_I11140	-	L-serine dehydratase, iron-sulfur-dependent, single chain form
1058	 50.79	-1	1170203..1170328	-	41	189024326	-	BAbS19_I11150	-	hypothetical protein
1059	 55.97	0	1170527..1171321	-	264	189024327	-	BAbS19_I11160	-	Protein of unknown function DUF218
1060	 58.02	0	1171496..1172467	+	323	189024328	-	BAbS19_I11170	-	hypothetical protein
1061	 56.07	0	1172478..1172864	-	128	189024329	-	BAbS19_I11180	-	Bacterial regulatory protein, MerR family
1062	 54.64	0	1173102..1173467	+	121	189024330	-	BAbS19_I11190	-	hypothetical protein
1063	 57.76	0	1173482..1173874	+	130	189024331	-	BAbS19_I11200	-	hypothetical protein
1064	 55.56	0	1173899..1174213	+	104	189024332	-	BAbS19_I11210	-	hypothetical protein
1065	 57.69	0	1174658..1175125	+	155	189024333	-	BAbS19_I11220	-	GTP cyclohydrolase I
1066	 59.32	0	1175256..1175432	+	58	189024334	-	BAbS19_I11230	-	hypothetical protein
1067	 54.14	0	1175464..1176006	+	180	189024335	-	BAbS19_I11240	-	hypothetical protein
1068	 58.17	0	1176009..1177421	-	470	189024336	-	BAbS19_I11250	-	Helix-turn-helix motif
1069	 58.71	0	1177572..1179104	+	510	189024337	-	BAbS19_I11260	-	Carboxyl transferase family
1070	 59.63	0	1179189..1181192	+	667	189024338	-	BAbS19_I11270	-	Propionyl-COA carboxylase alpha chain
1071	 58.91	0	1181253..1183391	+	712	189024339	-	BAbS19_I11280	-	methylmalonyl-CoA mutase
1072	 55.92	0	1183498..1183860	-	120	189024340	-	BAbS19_I11290	-	hypothetical protein
1073	 57.15	0	1184047..1186095	-	682	189024341	-	BAbS19_I11300	-	hypothetical protein
1074	 51.70	-1	1186136..1186282	-	48	189024342	-	BAbS19_I11310	-	hypothetical protein
1075	 57.88	0	1186332..1187321	-	329	189024343	-	BAbS19_I11320	-	Tetracycline resistance protein TetB
1076	 57.55	0	1187467..1188300	-	277	189024344	-	BAbS19_I11330	-	Asp/Glu racemase
1077	 57.52	0	1188297..1189127	-	276	189024345	-	BAbS19_I11340	-	tRNA/rRNA methyltransferase (SpoU)
1078	 58.29	0	1189307..1189891	+	194	189024346	-	BAbS19_I11350	-	Intracellular protease PfpI
1079	 57.91	0	1189980..1190390	+	136	189024347	-	BAbS19_I11360	-	hypothetical protein
1080	 57.20	0	1190518..1191732	+	404	189024348	-	BAbS19_I11370	-	Isocitrate/isopropylmalate dehydrogenase
1081	 58.09	0	1191954..1193399	+	481	189024349	-	BAbS19_I11380	-	Alkaline phosphatase
1082	 58.77	0	1193551..1196208	-	885	189024350	-	BAbS19_I11390	-	Alanyl-tRNA synthetase, class Iic
1083	 57.00	0	1196601..1197686	-	361	189024351	-	BAbS19_I11400	-	RecA bacterial DNA recombination protein
1084	 49.21	-2	1197856..1197981	-	41	189024352	-	BAbS19_I11410	-	hypothetical protein
1085	 59.13	0	1198017..1198679	-	220	189024353	-	BAbS19_I11420	-	Bacterial outer membrane protein
1086	 55.90	0	1198766..1199350	-	194	189024354	-	BAbS19_I11430	-	transcriptional regulatory protein
1087	 59.89	0	1199474..1200787	-	437	189024355	-	BAbS19_I11440	-	ATPase, AAA family
1088	 59.16	0	1200934..1202358	-	474	189024356	-	BAbS19_I11450	-	Serine protease, V8 family
1089	 58.04	0	1202638..1203066	-	142	189024357	-	BAbS19_I11460	-	Ribosomal protein L17
1090	 57.10	0	1203228..1204241	-	337	189024358	-	BAbS19_I11470	-	RNA polymerase, alpha chain, bacterial and organelle
1091	 62.05	+1	1204357..1204746	-	129	189024359	-	BAbS19_I11480	-	Ribosomal protein S11
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.