IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
883	 58.87	0	958926..960413	-	495	62317844	-	BruAb2_0954	-	aldehyde dehydrogenase family protein
884	 60.99	0	960397..961083	-	228	62317845	-	BruAb2_0955	-	GntR family transcriptional regulator
885	 50.34	-1	961183..961329	-	48	62317846	-	BruAb2_0956	-	hypothetical protein
886	 58.04	0	961453..962832	+	459	62317847	-	BruAb2_0957	-	transporter
887	 54.59	0	963226..964293	+	355	62317848	-	BruAb2_0958	-	hypothetical protein
888	 51.56	-1	964774..964998	+	74	62317849	-	BruAb2_0960	-	hypothetical protein
889	 65.19	+1	964999..965133	+	44	62317850	rpmH	BruAb2_0961	-	50S ribosomal protein L34
890	 57.08	0	965171..965608	+	145	62317851	rnpA	BruAb2_0962	-	ribonuclease P
891	 56.03	0	965598..967430	+	610	62317852	-	BruAb2_0963	-	putative inner membrane protein translocase component YidC
892	 59.58	0	967472..968275	+	267	62317853	-	BruAb2_0964	-	GTPase EngB
893	 58.14	0	968446..969336	+	296	62317854	argB	BruAb2_0965	-	acetylglutamate kinase
894	 55.46	0	969382..970086	+	234	62317855	-	BruAb2_0966	-	HAD superfamily hydrolase
895	 57.04	0	970148..970978	-	276	62317856	-	BruAb2_0967	-	hypothetical protein
896	 59.77	0	971197..972051	+	284	62317857	dapD	BruAb2_0968	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
897	 46.24	-2	972903..972995	+	30	62317858	-	BruAb2_0970	-	hypothetical protein
898	 58.84	0	973035..974222	+	395	62317859	dapE	BruAb2_0971	-	succinyl-diaminopimelate desuccinylase
899	 55.61	0	974285..974890	+	201	62317860	-	BruAb2_0972	-	hypothetical protein
900	 60.45	0	975065..975820	-	251	62317861	truA	BruAb2_0973	-	tRNA pseudouridine synthase A
901	 61.78	+1	975824..976744	-	306	62317862	fmt	BruAb2_0974	-	methionyl-tRNA formyltransferase
902	 53.72	0	976744..977307	-	187	62317863	def	BruAb2_0975	-	peptide deformylase
903	 60.46	0	977374..978597	+	407	62317864	-	BruAb2_0976	-	hypothetical protein
904	 58.82	0	978826..979131	-	101	62317865	-	BruAb2_0977	-	hypothetical protein
905	 49.65	-1	979240..979521	+	93	62317866	-	BruAb2_0978	-	hypothetical protein
906	 57.44	0	979769..981577	-	602	62317867	lepA	BruAb2_0979	-	GTP-binding protein LepA
907	 48.48	-2	981574..981705	-	43	62317868	-	BruAb2_0980	-	hypothetical protein
908	 56.01	0	982828..983634	-	268	62317869	uppP	BruAb2_0982	-	undecaprenyl pyrophosphate phosphatase
909	 52.94	-1	983639..983842	-	67	62317870	-	BruAb2_0983	-	hypothetical protein
910	 60.03	0	983890..984582	+	230	62317871	-	BruAb2_0984	-	glutathione S-transferase family protein
911	 58.90	0	984563..985759	+	398	62317872	-	BruAb2_0985	-	iron-sulfur cluster-binding protein
912	 59.66	0	985761..986630	+	289	62317873	-	BruAb2_0986	-	hypothetical protein
913	 61.00	0	986631..987653	+	340	62317874	mepA	BruAb2_0987	-	penicillin-insensitive murein endopeptidase
914	 58.20	0	987806..988183	+	125	62317875	mgsA	BruAb2_0988	-	methylglyoxal synthase
915	 60.85	0	988264..989295	+	343	62317876	glk	BruAb2_0989	-	glucokinase
916	 56.92	0	989516..991351	+	611	62317877	-	BruAb2_0990	-	ABC transporter, ATP-binding/permease protein
917	 63.20	+1	991381..992187	+	268	62317878	dapB	BruAb2_0991	-	dihydrodipicolinate reductase
918	 62.32	+1	992224..992844	+	206	62317879	gpm	BruAb2_0992	-	phosphoglyceromutase
919	 46.23	-2	993264..995015	+	583	62317880	-	BruAb2_0993	-	hypothetical protein
920	 59.62	0	995526..996149	+	207	62317881	-	BruAb2_0994	-	nitroreductase family protein
921	 53.91	0	996347..996793	+	148	62317882	-	BruAb2_0995	-	universal stress protein
922	 49.32	-1	996910..997128	-	72	62317883	-	BruAb2_0996	-	hypothetical protein
923	 56.73	0	997261..997713	+	150	62317884	-	BruAb2_0997	-	hypothetical protein
924	 58.67	0	997715..999115	+	466	62317885	-	BruAb2_0998	-	aldehyde dehydrogenase family protein
925	 57.34	0	999270..1000127	+	285	62317886	-	BruAb2_0999	-	endonuclease/exonuclease/phosphatase family protein
926	 57.77	0	1000137..1001597	-	486	62317887	cls	BruAb2_1000	-	Cls, cardiolipin synthase
927	 52.63	-1	1002344..1002457	-	37	62317888	-	BruAb2_1002	-	hypothetical protein
928	 58.75	0	1002493..1004070	+	525	62317889	prfC	BruAb2_1003	-	PrfC, peptide chain release factor 3
929	 60.93	0	1004086..1005306	-	406	62317890	coaBC	BruAb2_1004	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
930	 58.96	0	1005337..1006920	-	527	62317891	ubiB	BruAb2_1005	-	hypothetical protein
931	 56.79	0	1006969..1007778	-	269	62317892	ubiE	BruAb2_1006	-	ubiquinone/menaquinone biosynthesis methyltransferase
932	 57.42	0	1008089..1008715	+	208	62317893	upp	BruAb2_1007	-	uracil phosphoribosyltransferase
933	 56.77	0	1009045..1009701	-	218	62317894	msrA	BruAb2_1009	-	methionine sulfoxide reductase A
934	 57.10	0	1009724..1010047	-	107	62317895	-	BruAb2_1010	-	hypothetical protein
935	 50.98	-1	1010025..1010177	-	50	62317896	-	BruAb2_1011	-	hypothetical protein
936	 49.37	-1	1010718..1011665	-	315	62317897	-	BruAb2_1012	-	IS5 family transposase orfB
937	 48.00	-2	1011623..1011922	-	99	62317898	-	BruAb2_1013	-	IS3 family transposase OrfA
938	 55.46	0	1012146..1012877	+	243	62317899	-	BruAb2_1014	-	GntR family transcriptional regulator
939	 45.74	-2	1012874..1013002	+	42	62317900	-	BruAb2_1015	-	hypothetical protein
940	 60.08	0	1013073..1014515	-	480	62317901	-	BruAb2_1016	-	aldehyde dehydrogenase family protein
941	 58.75	0	1014527..1015789	-	420	62317902	-	BruAb2_1017	-	CAIB/BAIF family protein
942	 61.00	0	1015845..1016849	-	334	62317903	-	BruAb2_1018	-	peptide ABC transporter, ATP-binding protein
943	 59.73	0	1016842..1017879	-	345	62317904	-	BruAb2_1019	-	peptide ABC transporter, ATP-binding protein
944	 59.82	0	1017892..1018548	-	218	62317905	-	BruAb2_1020	-	peptide ABC transporter, permease protein
945	 57.50	0	1018560..1019573	-	337	62317906	-	BruAb2_1021	-	peptide ABC transporter, permease protein
946	 58.74	0	1019749..1020555	+	268	62317907	-	BruAb2_1022	-	IclR family transcriptional regulator
947	 59.75	0	1020615..1021901	+	428	62317908	-	BruAb2_1023	-	branched-chain alpha-keto acid dehydrogenase subunit E2
948	 53.02	0	1021985..1023604	-	539	62317909	-	BruAb2_1024	-	ABC transporter periplasmic substrate-binding protein
949	 58.74	0	1023634..1025589	-	651	62317910	-	BruAb2_1025	-	dehydrogenase complex, E1 component, dehydrogenase
950	 57.00	0	1025824..1027344	-	506	62317911	-	BruAb2_1026	-	3-hydroxybutyryl-CoA dehydrogenase
951	 57.22	0	1027346..1028128	-	260	62317912	-	BruAb2_1027	-	enoyl-CoA hydratase
952	 54.42	0	1028311..1029453	+	380	62317913	-	BruAb2_1028	-	acyl-CoA dehydrogenase
953	 61.46	+1	1029778..1032063	+	761	62317914	-	BruAb2_1029	-	penicillin amidase family protein
954	 58.73	0	1033786..1034730	+	314	62317915	-	BruAb2_1031	-	peptide ABC transporter permease
955	 62.18	+1	1034723..1035613	+	296	62317916	-	BruAb2_1032	-	peptide ABC transporter permease
956	 60.36	0	1035616..1036614	+	332	62317917	-	BruAb2_1033	-	peptide ABC transporter ATP-binding protein
957	 58.61	0	1036611..1037615	+	334	62317918	-	BruAb2_1034	-	peptide ABC transporter ATP-binding protein
958	 55.04	0	1037839..1038552	+	237	62317919	-	BruAb2_1035	-	transcriptional regulator
959	 54.40	0	1038618..1040174	+	518	62317920	-	BruAb2_1036	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
960	 55.79	0	1040210..1041220	+	336	62317921	-	BruAb2_1037	-	peptide ABC transporter, permease protein
961	 56.71	0	1041217..1042050	+	277	62317922	-	BruAb2_1038	-	peptide ABC transporter permease
962	 56.80	0	1042050..1043042	+	330	62317923	-	BruAb2_1039	-	ABC transporter ATPase D
963	 54.91	0	1043039..1044016	+	325	62317924	-	BruAb2_1040	-	oligopeptide ABC transporter, ATP-binding protein
964	 57.39	0	1044016..1044888	+	290	62317925	-	BruAb2_1041	-	gluconolactonase
965	 58.49	0	1044903..1046321	+	472	62317926	-	BruAb2_1042	-	amidase
966	 56.38	0	1046367..1047416	-	349	62317927	-	BruAb2_1043	-	ABC transporter extracellular solute binding protein
967	 58.08	0	1047442..1048245	-	267	62317928	-	BruAb2_1044	-	polyamine ABC transporter, permease protein
968	 55.15	0	1048242..1049057	-	271	62317929	-	BruAb2_1045	-	polyamine ABC transporter permease
969	 59.98	0	1049113..1050189	-	358	62317930	-	BruAb2_1046	-	ABC transporter
970	 62.44	+1	1050518..1051723	+	401	62317931	-	BruAb2_1047	-	glutamate-1-semialdehyde 2,1-aminomutase
971	 58.03	0	1051873..1053528	+	551	62317932	-	BruAb2_1048	-	hypothetical protein
972	 59.39	0	1053748..1054407	+	219	62317933	-	BruAb2_1049	-	L-fuculose phosphate aldolase
973	 50.77	-1	1055751..1056140	+	129	62317934	-	BruAb2_1051	-	putative cytoplasmic protein
974	 55.44	0	1056149..1056433	-	94	62317935	-	BruAb2_1052	-	pemK family protein
975	 48.23	-2	1057800..1058081	+	93	62317936	-	BruAb2_1054	-	IS3 family transposase orfA
976	 49.51	-1	1058039..1058959	+	306	62317937	-	BruAb2_1055	-	IS3 family transposase orfB
977	 58.71	0	1065451..1066317	+	288	62317938	-	BruAb2_1056	-	hypothetical protein
978	 56.94	0	1066597..1067028	+	143	62317939	-	BruAb2_1057	-	RfF2 family protein
979	 56.19	0	1067089..1068291	-	400	62317940	-	BruAb2_1058	-	cobalamin synthesis protein/P47K family protein
980	 54.73	0	1068458..1069462	-	334	62317941	znuA	BruAb2_1059	-	ZnuA, zinc ABC transporter, periplasmic zinc-bnding protein
981	 60.98	0	1069689..1070585	+	298	62317942	znuC	BruAb2_1060	-	ZnuC, zinc ABC transporter, ATP binding protein
982	 57.49	0	1070539..1071399	+	286	62317943	znuB	BruAb2_1061	-	ZnuB, zinc ABC transporter, permease protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.