IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
845	 59.56	0	919703..921307	-	534	62317806	-	BruAb2_0911	-	ribitol kinase
846	 57.75	0	921320..922048	-	242	62317807	-	BruAb2_0912	-	ribitol dehydrogenase
847	 59.32	0	922337..923575	-	412	62317808	-	BruAb2_0913	-	sugar ABC transporter permease
848	 56.51	0	924720..925772	-	350	62317809	-	BruAb2_0915	-	sugar ABC transporter periplasmic sugar-binding protein
849	 56.72	0	926173..927228	-	351	62317810	-	BruAb2_0916	-	LacI family sugar-binding transcriptional regulator
850	 57.61	0	927311..928006	-	231	62317811	-	BruAb2_0917	-	Crp/FNR family transcriptional regulator
851	 57.55	0	928107..929027	-	306	62317812	-	BruAb2_0918	-	hypothetical protein
852	 58.71	0	929160..930290	-	376	62317813	-	BruAb2_0919	-	copper-containing nitrite reductase
853	 46.67	-2	930421..930570	-	49	62317814	-	BruAb2_0920	-	hypothetical protein
854	 59.29	0	930646..931269	-	207	62317815	-	BruAb2_0921	-	hypothetical protein
855	 56.41	0	931295..931879	-	194	62317816	-	BruAb2_0922	-	hypothetical protein
856	 56.21	0	931876..933051	-	391	62317817	-	BruAb2_0923	-	hypothetical protein
857	 57.19	0	933175..933501	-	108	62317818	-	BruAb2_0924	-	hypothetical protein
858	 57.95	0	933508..934035	-	175	62317819	-	BruAb2_0925	-	hypothetical protein
859	 60.96	0	934032..935399	-	455	62317820	-	BruAb2_0926	-	hypothetical protein
860	 58.71	0	935435..935635	-	66	62317821	-	BruAb2_0927	-	hypothetical protein
861	 63.35	+1	935900..937801	-	633	62317822	norD	BruAb2_0928	-	NorD protein
862	 61.01	0	937813..938625	-	270	62317823	-	BruAb2_0929	-	CbbQ/NirQ/NorQ/GpvN family protein
863	 57.56	0	938716..940065	-	449	62317824	norB	BruAb2_0930	-	NorB, nitric-oxide reductase, large subunit
864	 59.82	0	940091..940543	-	150	62317825	norC	BruAb2_0931	-	NorC, nitric-oxide reductase, small subunit
865	 61.29	0	940703..940981	-	92	62317826	norF	BruAb2_0932	-	norF protein
866	 58.75	0	940989..941531	-	180	62317827	-	BruAb2_0933	-	cytochrome c oxidase, subunit III
867	 57.69	0	941635..941790	+	51	62317828	-	BruAb2_0934	-	hypothetical protein
868	 59.07	0	941847..942320	+	157	62317829	-	BruAb2_0935	-	hypothetical protein
869	 58.71	0	942328..943596	-	422	62317830	-	BruAb2_0936	-	hypothetical protein
870	 47.47	-2	943616..943714	+	32	62317831	-	BruAb2_0937	-	hypothetical protein
871	 56.86	0	943718..943819	+	33	62317832	-	BruAb2_0938	-	hypothetical protein
872	 63.68	+1	943833..944870	+	345	62317833	-	BruAb2_0939	-	malate/L-lactate dehydrogenase family protein
873	 59.29	0	944933..945895	-	320	62317834	-	BruAb2_0940	-	dihydrodipicolinate synthase family protein
874	 58.55	0	945996..946697	-	233	62317835	-	BruAb2_0941	-	GntR family transcriptional regulator
875	 61.86	+1	946913..947806	+	297	62317836	-	BruAb2_0942	-	hypothetical protein
876	 58.66	0	950384..951382	+	332	62317837	-	BruAb2_0946	-	DNA polymerase III subunit epsilon
877	 58.54	0	952858..953706	-	282	62317838	-	BruAb2_0948	-	peptide ABC transporter, ATP-binding protein
878	 62.87	+1	953703..954728	-	341	62317839	-	BruAb2_0949	-	peptide ABC transporter, ATP-binding protein
879	 57.96	0	954725..955585	-	286	62317840	-	BruAb2_0950	-	peptide ABC transporter, permease protein
880	 60.27	0	955582..956535	-	317	62317841	-	BruAb2_0951	-	peptide ABC transporter, permease protein
881	 58.42	0	956632..958110	-	492	62317842	-	BruAb2_0952	-	ABC transporter, periplasmic substrate-binding protein
882	 58.63	0	958133..958891	-	252	62317843	-	BruAb2_0953	-	3-ketoacyl-(acyl-carrier-protein) reductase
883	 58.87	0	958926..960413	-	495	62317844	-	BruAb2_0954	-	aldehyde dehydrogenase family protein
884	 60.99	0	960397..961083	-	228	62317845	-	BruAb2_0955	-	GntR family transcriptional regulator
885	 50.34	-1	961183..961329	-	48	62317846	-	BruAb2_0956	-	hypothetical protein
886	 58.04	0	961453..962832	+	459	62317847	-	BruAb2_0957	-	transporter
887	 54.59	0	963226..964293	+	355	62317848	-	BruAb2_0958	-	hypothetical protein
888	 51.56	-1	964774..964998	+	74	62317849	-	BruAb2_0960	-	hypothetical protein
889	 65.19	+1	964999..965133	+	44	62317850	rpmH	BruAb2_0961	-	50S ribosomal protein L34
890	 57.08	0	965171..965608	+	145	62317851	rnpA	BruAb2_0962	-	ribonuclease P
891	 56.03	0	965598..967430	+	610	62317852	-	BruAb2_0963	-	putative inner membrane protein translocase component YidC
892	 59.58	0	967472..968275	+	267	62317853	-	BruAb2_0964	-	GTPase EngB
893	 58.14	0	968446..969336	+	296	62317854	argB	BruAb2_0965	-	acetylglutamate kinase
894	 55.46	0	969382..970086	+	234	62317855	-	BruAb2_0966	-	HAD superfamily hydrolase
895	 57.04	0	970148..970978	-	276	62317856	-	BruAb2_0967	-	hypothetical protein
896	 59.77	0	971197..972051	+	284	62317857	dapD	BruAb2_0968	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
897	 46.24	-2	972903..972995	+	30	62317858	-	BruAb2_0970	-	hypothetical protein
898	 58.84	0	973035..974222	+	395	62317859	dapE	BruAb2_0971	-	succinyl-diaminopimelate desuccinylase
899	 55.61	0	974285..974890	+	201	62317860	-	BruAb2_0972	-	hypothetical protein
900	 60.45	0	975065..975820	-	251	62317861	truA	BruAb2_0973	-	tRNA pseudouridine synthase A
901	 61.78	+1	975824..976744	-	306	62317862	fmt	BruAb2_0974	-	methionyl-tRNA formyltransferase
902	 53.72	0	976744..977307	-	187	62317863	def	BruAb2_0975	-	peptide deformylase
903	 60.46	0	977374..978597	+	407	62317864	-	BruAb2_0976	-	hypothetical protein
904	 58.82	0	978826..979131	-	101	62317865	-	BruAb2_0977	-	hypothetical protein
905	 49.65	-1	979240..979521	+	93	62317866	-	BruAb2_0978	-	hypothetical protein
906	 57.44	0	979769..981577	-	602	62317867	lepA	BruAb2_0979	-	GTP-binding protein LepA
907	 48.48	-2	981574..981705	-	43	62317868	-	BruAb2_0980	-	hypothetical protein
908	 56.01	0	982828..983634	-	268	62317869	uppP	BruAb2_0982	-	undecaprenyl pyrophosphate phosphatase
909	 52.94	-1	983639..983842	-	67	62317870	-	BruAb2_0983	-	hypothetical protein
910	 60.03	0	983890..984582	+	230	62317871	-	BruAb2_0984	-	glutathione S-transferase family protein
911	 58.90	0	984563..985759	+	398	62317872	-	BruAb2_0985	-	iron-sulfur cluster-binding protein
912	 59.66	0	985761..986630	+	289	62317873	-	BruAb2_0986	-	hypothetical protein
913	 61.00	0	986631..987653	+	340	62317874	mepA	BruAb2_0987	-	penicillin-insensitive murein endopeptidase
914	 58.20	0	987806..988183	+	125	62317875	mgsA	BruAb2_0988	-	methylglyoxal synthase
915	 60.85	0	988264..989295	+	343	62317876	glk	BruAb2_0989	-	glucokinase
916	 56.92	0	989516..991351	+	611	62317877	-	BruAb2_0990	-	ABC transporter, ATP-binding/permease protein
917	 63.20	+1	991381..992187	+	268	62317878	dapB	BruAb2_0991	-	dihydrodipicolinate reductase
918	 62.32	+1	992224..992844	+	206	62317879	gpm	BruAb2_0992	-	phosphoglyceromutase
919	 46.23	-2	993264..995015	+	583	62317880	-	BruAb2_0993	-	hypothetical protein
920	 59.62	0	995526..996149	+	207	62317881	-	BruAb2_0994	-	nitroreductase family protein
921	 53.91	0	996347..996793	+	148	62317882	-	BruAb2_0995	-	universal stress protein
922	 49.32	-1	996910..997128	-	72	62317883	-	BruAb2_0996	-	hypothetical protein
923	 56.73	0	997261..997713	+	150	62317884	-	BruAb2_0997	-	hypothetical protein
924	 58.67	0	997715..999115	+	466	62317885	-	BruAb2_0998	-	aldehyde dehydrogenase family protein
925	 57.34	0	999270..1000127	+	285	62317886	-	BruAb2_0999	-	endonuclease/exonuclease/phosphatase family protein
926	 57.77	0	1000137..1001597	-	486	62317887	cls	BruAb2_1000	-	Cls, cardiolipin synthase
927	 52.63	-1	1002344..1002457	-	37	62317888	-	BruAb2_1002	-	hypothetical protein
928	 58.75	0	1002493..1004070	+	525	62317889	prfC	BruAb2_1003	-	PrfC, peptide chain release factor 3
929	 60.93	0	1004086..1005306	-	406	62317890	coaBC	BruAb2_1004	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
930	 58.96	0	1005337..1006920	-	527	62317891	ubiB	BruAb2_1005	-	hypothetical protein
931	 56.79	0	1006969..1007778	-	269	62317892	ubiE	BruAb2_1006	-	ubiquinone/menaquinone biosynthesis methyltransferase
932	 57.42	0	1008089..1008715	+	208	62317893	upp	BruAb2_1007	-	uracil phosphoribosyltransferase
933	 56.77	0	1009045..1009701	-	218	62317894	msrA	BruAb2_1009	-	methionine sulfoxide reductase A
934	 57.10	0	1009724..1010047	-	107	62317895	-	BruAb2_1010	-	hypothetical protein
935	 50.98	-1	1010025..1010177	-	50	62317896	-	BruAb2_1011	-	hypothetical protein
936	 49.37	-1	1010718..1011665	-	315	62317897	-	BruAb2_1012	-	IS5 family transposase orfB
937	 48.00	-2	1011623..1011922	-	99	62317898	-	BruAb2_1013	-	IS3 family transposase OrfA
938	 55.46	0	1012146..1012877	+	243	62317899	-	BruAb2_1014	-	GntR family transcriptional regulator
939	 45.74	-2	1012874..1013002	+	42	62317900	-	BruAb2_1015	-	hypothetical protein
940	 60.08	0	1013073..1014515	-	480	62317901	-	BruAb2_1016	-	aldehyde dehydrogenase family protein
941	 58.75	0	1014527..1015789	-	420	62317902	-	BruAb2_1017	-	CAIB/BAIF family protein
942	 61.00	0	1015845..1016849	-	334	62317903	-	BruAb2_1018	-	peptide ABC transporter, ATP-binding protein
943	 59.73	0	1016842..1017879	-	345	62317904	-	BruAb2_1019	-	peptide ABC transporter, ATP-binding protein
944	 59.82	0	1017892..1018548	-	218	62317905	-	BruAb2_1020	-	peptide ABC transporter, permease protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.