IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
812	 57.90	0	881681..882946	-	421	62317773	-	BruAb2_0877	-	sugar ABC transporter, periplasmic sugar-binding protein
813	 47.86	-2	883173..883289	+	38	62317774	-	BruAb2_0878	-	hypothetical protein
814	 60.08	0	883297..884313	+	338	62317775	-	BruAb2_0879	-	sugar-binding protein
815	 55.41	0	884368..885078	-	236	62317776	ftrB	BruAb2_0880	-	transcriptional activator FtrB
816	 59.68	0	885368..888172	+	934	62317777	-	BruAb2_0881	-	nitrite extrusion protein
817	 60.59	0	888087..891821	+	1244	62317778	narG	BruAb2_0882	-	NarG, respiratory nitrate reductase, alpha subunit
818	 59.52	0	891848..893386	+	512	62317779	narH	BruAb2_0883	-	NarH, respiratory nitrate reductase, beta subunit
819	 61.02	0	893386..894093	+	235	62317780	narJ	BruAb2_0884	-	NarJ, respiratory nitrate reductase, delta subunit
820	 60.61	0	894104..894829	+	241	62317781	narI	BruAb2_0885	-	NarI, respiratory nitrate reductase, gamma subunit
821	 64.00	+1	894835..895770	+	311	62317782	-	BruAb2_0886	-	peptidyl-prolyl cis-trans isomerase
822	 63.50	+1	895767..896303	+	178	62317783	-	BruAb2_0887	-	hypothetical protein
823	 62.27	+1	896313..896903	-	196	62317784	-	BruAb2_0888	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
824	 60.00	0	898528..899052	+	174	62317785	-	BruAb2_0890	-	hypothetical protein
825	 60.63	0	899043..900020	+	325	62317786	-	BruAb2_0891	-	U32 family peptidase
826	 61.20	0	900023..900955	+	310	62317787	-	BruAb2_0892	-	protease
827	 51.82	-1	901053..901355	-	100	62317788	-	BruAb2_0893	-	hypothetical protein
828	 58.87	0	901382..902227	+	281	62317789	-	BruAb2_0894	-	ABC transporter, ATP binding protein
829	 59.72	0	902224..903015	+	263	62317790	-	BruAb2_0895	-	ABC transporter, permease protein
830	 59.17	0	903041..904081	+	346	62317791	-	BruAb2_0896	-	ABC transporter periplasmic-binding protein
831	 59.74	0	904155..905396	-	413	62317792	-	BruAb2_0897	-	hypothetical protein
832	 51.25	-1	905447..905887	-	146	62317793	-	BruAb2_0898	-	pseudoazurin
833	 61.09	0	906025..906723	-	232	62317794	nnrR	BruAb2_0899	-	NnrR, transcriptional regulator
834	 59.84	0	906838..907818	-	326	62317795	nosX	BruAb2_0900	-	NosX
835	 60.19	0	907830..908369	-	179	62317796	-	BruAb2_0901	-	protein disulfide isomerase NosL
836	 58.48	0	908366..909196	-	276	62317797	nosY	BruAb2_0902	-	NosY, nitrous-oxide reductase, nosY component
837	 59.41	0	909193..910143	-	316	62317798	nosF	BruAb2_0903	-	copper ABC transporter, ATP-binding protein
838	 58.64	0	910181..911575	-	464	62317799	nosD	BruAb2_0904	-	NosD, copper ABC transporter, periplasmic copper-binding protein
839	 56.09	0	911581..913500	-	639	62317800	nosZ	BruAb2_0905	-	nitrous-oxide reductase
840	 58.59	0	913521..915884	-	787	62317801	-	BruAb2_0906	-	transcriptional regulator NosR
841	 53.12	0	915897..916088	-	63	62317802	-	BruAb2_0907	-	hypothetical protein
842	 57.91	0	916435..918285	+	616	62317803	-	BruAb2_0908	-	ABC transporter ATP-binding protein
843	 62.47	+1	918433..918909	+	158	62317804	-	BruAb2_0909	-	hypothetical protein
844	 59.91	0	918906..919571	+	221	62317805	-	BruAb2_0910	-	hypothetical protein
845	 59.56	0	919703..921307	-	534	62317806	-	BruAb2_0911	-	ribitol kinase
846	 57.75	0	921320..922048	-	242	62317807	-	BruAb2_0912	-	ribitol dehydrogenase
847	 59.32	0	922337..923575	-	412	62317808	-	BruAb2_0913	-	sugar ABC transporter permease
848	 56.51	0	924720..925772	-	350	62317809	-	BruAb2_0915	-	sugar ABC transporter periplasmic sugar-binding protein
849	 56.72	0	926173..927228	-	351	62317810	-	BruAb2_0916	-	LacI family sugar-binding transcriptional regulator
850	 57.61	0	927311..928006	-	231	62317811	-	BruAb2_0917	-	Crp/FNR family transcriptional regulator
851	 57.55	0	928107..929027	-	306	62317812	-	BruAb2_0918	-	hypothetical protein
852	 58.71	0	929160..930290	-	376	62317813	-	BruAb2_0919	-	copper-containing nitrite reductase
853	 46.67	-2	930421..930570	-	49	62317814	-	BruAb2_0920	-	hypothetical protein
854	 59.29	0	930646..931269	-	207	62317815	-	BruAb2_0921	-	hypothetical protein
855	 56.41	0	931295..931879	-	194	62317816	-	BruAb2_0922	-	hypothetical protein
856	 56.21	0	931876..933051	-	391	62317817	-	BruAb2_0923	-	hypothetical protein
857	 57.19	0	933175..933501	-	108	62317818	-	BruAb2_0924	-	hypothetical protein
858	 57.95	0	933508..934035	-	175	62317819	-	BruAb2_0925	-	hypothetical protein
859	 60.96	0	934032..935399	-	455	62317820	-	BruAb2_0926	-	hypothetical protein
860	 58.71	0	935435..935635	-	66	62317821	-	BruAb2_0927	-	hypothetical protein
861	 63.35	+1	935900..937801	-	633	62317822	norD	BruAb2_0928	-	NorD protein
862	 61.01	0	937813..938625	-	270	62317823	-	BruAb2_0929	-	CbbQ/NirQ/NorQ/GpvN family protein
863	 57.56	0	938716..940065	-	449	62317824	norB	BruAb2_0930	-	NorB, nitric-oxide reductase, large subunit
864	 59.82	0	940091..940543	-	150	62317825	norC	BruAb2_0931	-	NorC, nitric-oxide reductase, small subunit
865	 61.29	0	940703..940981	-	92	62317826	norF	BruAb2_0932	-	norF protein
866	 58.75	0	940989..941531	-	180	62317827	-	BruAb2_0933	-	cytochrome c oxidase, subunit III
867	 57.69	0	941635..941790	+	51	62317828	-	BruAb2_0934	-	hypothetical protein
868	 59.07	0	941847..942320	+	157	62317829	-	BruAb2_0935	-	hypothetical protein
869	 58.71	0	942328..943596	-	422	62317830	-	BruAb2_0936	-	hypothetical protein
870	 47.47	-2	943616..943714	+	32	62317831	-	BruAb2_0937	-	hypothetical protein
871	 56.86	0	943718..943819	+	33	62317832	-	BruAb2_0938	-	hypothetical protein
872	 63.68	+1	943833..944870	+	345	62317833	-	BruAb2_0939	-	malate/L-lactate dehydrogenase family protein
873	 59.29	0	944933..945895	-	320	62317834	-	BruAb2_0940	-	dihydrodipicolinate synthase family protein
874	 58.55	0	945996..946697	-	233	62317835	-	BruAb2_0941	-	GntR family transcriptional regulator
875	 61.86	+1	946913..947806	+	297	62317836	-	BruAb2_0942	-	hypothetical protein
876	 58.66	0	950384..951382	+	332	62317837	-	BruAb2_0946	-	DNA polymerase III subunit epsilon
877	 58.54	0	952858..953706	-	282	62317838	-	BruAb2_0948	-	peptide ABC transporter, ATP-binding protein
878	 62.87	+1	953703..954728	-	341	62317839	-	BruAb2_0949	-	peptide ABC transporter, ATP-binding protein
879	 57.96	0	954725..955585	-	286	62317840	-	BruAb2_0950	-	peptide ABC transporter, permease protein
880	 60.27	0	955582..956535	-	317	62317841	-	BruAb2_0951	-	peptide ABC transporter, permease protein
881	 58.42	0	956632..958110	-	492	62317842	-	BruAb2_0952	-	ABC transporter, periplasmic substrate-binding protein
882	 58.63	0	958133..958891	-	252	62317843	-	BruAb2_0953	-	3-ketoacyl-(acyl-carrier-protein) reductase
883	 58.87	0	958926..960413	-	495	62317844	-	BruAb2_0954	-	aldehyde dehydrogenase family protein
884	 60.99	0	960397..961083	-	228	62317845	-	BruAb2_0955	-	GntR family transcriptional regulator
885	 50.34	-1	961183..961329	-	48	62317846	-	BruAb2_0956	-	hypothetical protein
886	 58.04	0	961453..962832	+	459	62317847	-	BruAb2_0957	-	transporter
887	 54.59	0	963226..964293	+	355	62317848	-	BruAb2_0958	-	hypothetical protein
888	 51.56	-1	964774..964998	+	74	62317849	-	BruAb2_0960	-	hypothetical protein
889	 65.19	+1	964999..965133	+	44	62317850	rpmH	BruAb2_0961	-	50S ribosomal protein L34
890	 57.08	0	965171..965608	+	145	62317851	rnpA	BruAb2_0962	-	ribonuclease P
891	 56.03	0	965598..967430	+	610	62317852	-	BruAb2_0963	-	putative inner membrane protein translocase component YidC
892	 59.58	0	967472..968275	+	267	62317853	-	BruAb2_0964	-	GTPase EngB
893	 58.14	0	968446..969336	+	296	62317854	argB	BruAb2_0965	-	acetylglutamate kinase
894	 55.46	0	969382..970086	+	234	62317855	-	BruAb2_0966	-	HAD superfamily hydrolase
895	 57.04	0	970148..970978	-	276	62317856	-	BruAb2_0967	-	hypothetical protein
896	 59.77	0	971197..972051	+	284	62317857	dapD	BruAb2_0968	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
897	 46.24	-2	972903..972995	+	30	62317858	-	BruAb2_0970	-	hypothetical protein
898	 58.84	0	973035..974222	+	395	62317859	dapE	BruAb2_0971	-	succinyl-diaminopimelate desuccinylase
899	 55.61	0	974285..974890	+	201	62317860	-	BruAb2_0972	-	hypothetical protein
900	 60.45	0	975065..975820	-	251	62317861	truA	BruAb2_0973	-	tRNA pseudouridine synthase A
901	 61.78	+1	975824..976744	-	306	62317862	fmt	BruAb2_0974	-	methionyl-tRNA formyltransferase
902	 53.72	0	976744..977307	-	187	62317863	def	BruAb2_0975	-	peptide deformylase
903	 60.46	0	977374..978597	+	407	62317864	-	BruAb2_0976	-	hypothetical protein
904	 58.82	0	978826..979131	-	101	62317865	-	BruAb2_0977	-	hypothetical protein
905	 49.65	-1	979240..979521	+	93	62317866	-	BruAb2_0978	-	hypothetical protein
906	 57.44	0	979769..981577	-	602	62317867	lepA	BruAb2_0979	-	GTP-binding protein LepA
907	 48.48	-2	981574..981705	-	43	62317868	-	BruAb2_0980	-	hypothetical protein
908	 56.01	0	982828..983634	-	268	62317869	uppP	BruAb2_0982	-	undecaprenyl pyrophosphate phosphatase
909	 52.94	-1	983639..983842	-	67	62317870	-	BruAb2_0983	-	hypothetical protein
910	 60.03	0	983890..984582	+	230	62317871	-	BruAb2_0984	-	glutathione S-transferase family protein
911	 58.90	0	984563..985759	+	398	62317872	-	BruAb2_0985	-	iron-sulfur cluster-binding protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.