IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
765	 52.47	-1	832773..833399	-	208	62317726	-	BruAb2_0825	-	disulfide bond formation protein DsbB
766	 47.13	-2	833428..833601	-	57	62317727	-	BruAb2_0826	-	hypothetical protein
767	 57.00	0	833732..835231	-	499	62317728	katA	BruAb2_0827	-	KatA, catalase
768	 55.56	0	835401..836354	+	317	62317729	oxyR	BruAb2_0828	-	transcriptional regulator OxyR
769	 58.89	0	836423..837541	+	372	62317730	-	BruAb2_0829	-	cytochrome c family protein
770	 59.91	0	837701..839194	-	497	62317731	guaB	BruAb2_0830	-	inositol-5-monophosphate dehydrogenase
771	 60.25	0	839389..840744	+	451	62317732	-	BruAb2_0831	-	voltage gated chloride channel family protein
772	 61.61	+1	840866..841873	+	335	62317733	-	BruAb2_0832	-	hypothetical protein
773	 59.14	0	841993..843426	+	477	62317734	-	BruAb2_0833	-	phosphoglucomutase
774	 58.55	0	843423..844838	+	471	62317735	-	BruAb2_0834	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
775	 52.93	-1	844959..845846	-	295	62317736	-	BruAb2_0835	-	LysR family transcriptional regulator
776	 54.31	0	846075..846341	+	88	62317737	-	BruAb2_0836	-	hypothetical protein
777	 56.62	0	846636..848228	+	530	62317738	-	BruAb2_0837	-	EAL domain-containing protein
778	 46.43	-2	848305..848556	-	83	62317739	-	BruAb2_0838	-	hypothetical protein
779	 41.41	-2	848808..848906	-	32	62317740	-	BruAb2_0839	-	hypothetical protein
780	 49.28	-1	849068..849412	-	114	62317741	hdeA	BruAb2_0840	-	acid-resistance protein
781	 56.50	0	849560..850513	-	317	62317742	-	BruAb2_0841	-	glutaminase
782	 55.71	0	850549..852081	-	510	62317743	-	BruAb2_0842	-	glutamate/gamma-aminobutyrate antiporter
783	 46.55	-2	853997..854170	+	57	62317744	-	BruAb2_0844	-	hypothetical protein
784	 57.49	0	854245..854778	+	177	62317745	-	BruAb2_0845	-	hypothetical protein
785	 59.63	0	854964..856199	+	411	62317746	-	BruAb2_0846	-	HlyD family secretion protein
786	 55.29	0	859426..859926	+	166	62317747	-	BruAb2_0848	-	hypothetical protein
787	 50.00	-1	860068..860595	-	175	62317748	-	BruAb2_0849	-	hypothetical protein
788	 46.30	-2	860832..861047	-	71	62317749	-	BruAb2_0850	-	hypothetical protein
789	 37.22	-2	861053..861232	-	59	62317750	-	BruAb2_0851	-	hypothetical protein
790	 57.79	0	861544..862320	-	258	62317751	-	BruAb2_0852	-	spermidine/putrescine ABC transporter, permease protein
791	 59.56	0	862323..863561	-	412	62317752	-	BruAb2_0853	-	spermidine/putrescine ABC transporter, permease protein
792	 57.68	0	863495..864562	-	355	62317753	-	BruAb2_0854	-	spermidine/putrescine ABC transporter ATP-binding protein
793	 56.73	0	864636..865682	-	348	62317754	-	BruAb2_0855	-	spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein
794	 57.76	0	866058..866450	+	130	62317755	-	BruAb2_0856	-	hypothetical protein
795	 53.57	0	866779..866946	-	55	62317756	-	BruAb2_0857	-	hypothetical protein
796	 57.14	0	866990..867262	-	90	62317757	minE	BruAb2_0858	-	cell division topological specificity factor MinE
797	 60.42	0	867259..868074	-	271	62317758	minD	BruAb2_0859	-	MinD, septum site-determining protein
798	 61.94	+1	868102..868863	-	253	62317759	minC	BruAb2_0860	-	septum formation inhibitor
799	 45.45	-2	868993..869124	-	43	62317760	-	BruAb2_0861	-	hypothetical protein
800	 40.86	-2	869109..869201	-	30	62317761	-	BruAb2_0862	-	hypothetical protein
801	 42.22	-2	869335..869559	+	74	62317762	-	BruAb2_0863	-	hypothetical protein
802	 51.52	-1	869729..870718	-	329	62317763	nrdF	BruAb2_0864	-	ribonucleotide-diphosphate reductase subunit beta
803	 53.45	0	870733..872874	-	713	62317764	nrdE	BruAb2_0865	-	ribonucleotide-diphosphate reductase subunit alpha
804	 56.86	0	872925..873332	-	135	62317765	nrdI	BruAb2_0866	-	ribonucleotide reductase stimulatory protein
805	 56.76	0	873346..873567	-	73	62317766	nrdH	BruAb2_0867	-	NrdH, glutaredoxin-like protein NrdH
806	 59.94	0	873761..874087	+	108	62317767	-	BruAb2_0868	-	hypothetical protein
807	 42.74	-2	874141..874257	-	38	62317768	-	BruAb2_0869	-	hypothetical protein
808	 51.28	-1	876152..876463	-	103	62317769	-	BruAb2_0871	-	hypothetical protein
809	 60.08	0	876886..877932	-	348	62317770	-	BruAb2_0872	-	Gfo/Idh/MocA family oxidoreductase
810	 59.01	0	877941..878750	-	269	62317771	-	BruAb2_0873	-	hypothetical protein
811	 59.28	0	878789..879790	-	333	62317772	-	BruAb2_0874	-	sugar ABC transporter, ATP-binding protein
812	 57.90	0	881681..882946	-	421	62317773	-	BruAb2_0877	-	sugar ABC transporter, periplasmic sugar-binding protein
813	 47.86	-2	883173..883289	+	38	62317774	-	BruAb2_0878	-	hypothetical protein
814	 60.08	0	883297..884313	+	338	62317775	-	BruAb2_0879	-	sugar-binding protein
815	 55.41	0	884368..885078	-	236	62317776	ftrB	BruAb2_0880	-	transcriptional activator FtrB
816	 59.68	0	885368..888172	+	934	62317777	-	BruAb2_0881	-	nitrite extrusion protein
817	 60.59	0	888087..891821	+	1244	62317778	narG	BruAb2_0882	-	NarG, respiratory nitrate reductase, alpha subunit
818	 59.52	0	891848..893386	+	512	62317779	narH	BruAb2_0883	-	NarH, respiratory nitrate reductase, beta subunit
819	 61.02	0	893386..894093	+	235	62317780	narJ	BruAb2_0884	-	NarJ, respiratory nitrate reductase, delta subunit
820	 60.61	0	894104..894829	+	241	62317781	narI	BruAb2_0885	-	NarI, respiratory nitrate reductase, gamma subunit
821	 64.00	+1	894835..895770	+	311	62317782	-	BruAb2_0886	-	peptidyl-prolyl cis-trans isomerase
822	 63.50	+1	895767..896303	+	178	62317783	-	BruAb2_0887	-	hypothetical protein
823	 62.27	+1	896313..896903	-	196	62317784	-	BruAb2_0888	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
824	 60.00	0	898528..899052	+	174	62317785	-	BruAb2_0890	-	hypothetical protein
825	 60.63	0	899043..900020	+	325	62317786	-	BruAb2_0891	-	U32 family peptidase
826	 61.20	0	900023..900955	+	310	62317787	-	BruAb2_0892	-	protease
827	 51.82	-1	901053..901355	-	100	62317788	-	BruAb2_0893	-	hypothetical protein
828	 58.87	0	901382..902227	+	281	62317789	-	BruAb2_0894	-	ABC transporter, ATP binding protein
829	 59.72	0	902224..903015	+	263	62317790	-	BruAb2_0895	-	ABC transporter, permease protein
830	 59.17	0	903041..904081	+	346	62317791	-	BruAb2_0896	-	ABC transporter periplasmic-binding protein
831	 59.74	0	904155..905396	-	413	62317792	-	BruAb2_0897	-	hypothetical protein
832	 51.25	-1	905447..905887	-	146	62317793	-	BruAb2_0898	-	pseudoazurin
833	 61.09	0	906025..906723	-	232	62317794	nnrR	BruAb2_0899	-	NnrR, transcriptional regulator
834	 59.84	0	906838..907818	-	326	62317795	nosX	BruAb2_0900	-	NosX
835	 60.19	0	907830..908369	-	179	62317796	-	BruAb2_0901	-	protein disulfide isomerase NosL
836	 58.48	0	908366..909196	-	276	62317797	nosY	BruAb2_0902	-	NosY, nitrous-oxide reductase, nosY component
837	 59.41	0	909193..910143	-	316	62317798	nosF	BruAb2_0903	-	copper ABC transporter, ATP-binding protein
838	 58.64	0	910181..911575	-	464	62317799	nosD	BruAb2_0904	-	NosD, copper ABC transporter, periplasmic copper-binding protein
839	 56.09	0	911581..913500	-	639	62317800	nosZ	BruAb2_0905	-	nitrous-oxide reductase
840	 58.59	0	913521..915884	-	787	62317801	-	BruAb2_0906	-	transcriptional regulator NosR
841	 53.12	0	915897..916088	-	63	62317802	-	BruAb2_0907	-	hypothetical protein
842	 57.91	0	916435..918285	+	616	62317803	-	BruAb2_0908	-	ABC transporter ATP-binding protein
843	 62.47	+1	918433..918909	+	158	62317804	-	BruAb2_0909	-	hypothetical protein
844	 59.91	0	918906..919571	+	221	62317805	-	BruAb2_0910	-	hypothetical protein
845	 59.56	0	919703..921307	-	534	62317806	-	BruAb2_0911	-	ribitol kinase
846	 57.75	0	921320..922048	-	242	62317807	-	BruAb2_0912	-	ribitol dehydrogenase
847	 59.32	0	922337..923575	-	412	62317808	-	BruAb2_0913	-	sugar ABC transporter permease
848	 56.51	0	924720..925772	-	350	62317809	-	BruAb2_0915	-	sugar ABC transporter periplasmic sugar-binding protein
849	 56.72	0	926173..927228	-	351	62317810	-	BruAb2_0916	-	LacI family sugar-binding transcriptional regulator
850	 57.61	0	927311..928006	-	231	62317811	-	BruAb2_0917	-	Crp/FNR family transcriptional regulator
851	 57.55	0	928107..929027	-	306	62317812	-	BruAb2_0918	-	hypothetical protein
852	 58.71	0	929160..930290	-	376	62317813	-	BruAb2_0919	-	copper-containing nitrite reductase
853	 46.67	-2	930421..930570	-	49	62317814	-	BruAb2_0920	-	hypothetical protein
854	 59.29	0	930646..931269	-	207	62317815	-	BruAb2_0921	-	hypothetical protein
855	 56.41	0	931295..931879	-	194	62317816	-	BruAb2_0922	-	hypothetical protein
856	 56.21	0	931876..933051	-	391	62317817	-	BruAb2_0923	-	hypothetical protein
857	 57.19	0	933175..933501	-	108	62317818	-	BruAb2_0924	-	hypothetical protein
858	 57.95	0	933508..934035	-	175	62317819	-	BruAb2_0925	-	hypothetical protein
859	 60.96	0	934032..935399	-	455	62317820	-	BruAb2_0926	-	hypothetical protein
860	 58.71	0	935435..935635	-	66	62317821	-	BruAb2_0927	-	hypothetical protein
861	 63.35	+1	935900..937801	-	633	62317822	norD	BruAb2_0928	-	NorD protein
862	 61.01	0	937813..938625	-	270	62317823	-	BruAb2_0929	-	CbbQ/NirQ/NorQ/GpvN family protein
863	 57.56	0	938716..940065	-	449	62317824	norB	BruAb2_0930	-	NorB, nitric-oxide reductase, large subunit
864	 59.82	0	940091..940543	-	150	62317825	norC	BruAb2_0931	-	NorC, nitric-oxide reductase, small subunit
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.