IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
726	 59.00	0	788455..790644	-	729	62317687	-	BruAb2_0785	-	exopolysaccharide biosynthesis protein Bme12
727	 54.04	0	790681..791448	-	255	62317688	-	BruAb2_0786	-	LuxR family transcriptional regulator
728	 49.41	-1	791811..792569	+	252	62317689	-	BruAb2_0787	-	Crp/FNR family transcriptional regulator
729	 51.81	-1	792570..792845	-	91	62317690	-	BruAb2_0788	-	hypothetical protein
730	 56.64	0	792946..794112	-	388	62317691	-	BruAb2_0789	-	Bme15
731	 61.66	+1	794136..795713	-	525	62317692	-	BruAb2_0790	-	ROK family protein
732	 57.34	0	795873..796601	+	242	62317693	-	BruAb2_0791	-	GntR family transcriptional regulator
733	 57.07	0	796598..798181	+	527	62317694	-	BruAb2_0792	-	peptide ABC transporter, periplasmic peptide-binding protein
734	 61.28	0	799241..800113	+	290	62317695	-	BruAb2_0794	-	peptide ABC transporter, permease protein
735	 59.69	0	800133..801050	+	305	62317696	-	BruAb2_0795	-	dihydrodipicolinate synthase family protein
736	 61.55	+1	801061..802077	+	338	62317697	-	BruAb2_0796	-	peptide ABC transporter, ATP-binding protein
737	 60.06	0	802074..803027	+	317	62317698	-	BruAb2_0797	-	peptide ABC transporter, ATP-binding protein
738	 58.48	0	803100..804089	-	329	62317699	-	BruAb2_0798	-	Gfo/Idh/MocA family oxidoreductase
739	 57.43	0	804077..805072	-	331	62317700	-	BruAb2_0799	-	oxidoreductase
740	 56.29	0	805277..806404	-	375	62317701	-	BruAb2_0800	-	alcohol dehydrogenase, zinc-containing
741	 55.76	0	806467..807630	-	387	62317702	-	BruAb2_0801	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
742	 59.05	0	807722..809152	-	476	62317703	-	BruAb2_0802	-	aldehyde dehydrogenase family protein
743	 59.02	0	809177..810811	-	544	62317704	-	BruAb2_0803	-	GMC family oxidoreductase
744	 59.71	0	810816..811634	-	272	62317705	-	BruAb2_0804	-	shikimate dehydrogenase family protein
745	 59.02	0	811639..812436	-	265	62317706	fabG	BruAb2_0805	-	3-ketoacyl-(acyl-carrier-protein) reductase
746	 56.74	0	812439..813143	-	234	62317707	-	BruAb2_0806	-	branched-chain amino acid ABC transporter, ATP-binding protein
747	 58.74	0	813130..814959	-	609	62317708	-	BruAb2_0807	-	branched-chain amino acid ABC transporter, ATP-binding protein
748	 54.85	0	814956..815852	-	298	62317709	-	BruAb2_0808	-	branched-chain amino acid ABC transporter, permease protein
749	 56.85	0	815901..817112	-	403	62317710	-	BruAb2_0809	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
750	 59.62	0	817196..818203	-	335	62317711	-	BruAb2_0810	-	alcohol dehydrogenase, zinc-containing
751	 50.64	-1	818196..818351	-	51	62317712	-	BruAb2_0811	-	hypothetical protein
752	 54.72	0	818475..819152	+	225	62317713	-	BruAb2_0812	-	GntR family transcriptional regulator
753	 57.99	0	819223..820386	-	387	62317714	-	BruAb2_0813	-	heme-thiolate monooxygenase
754	 54.32	0	820429..820590	-	53	62317715	-	BruAb2_0814	-	hypothetical protein
755	 56.88	0	820829..822034	+	401	62317716	-	BruAb2_0815	-	acetate kinase
756	 57.34	0	822055..824433	+	792	62317717	xfp	BruAb2_0816	-	putative phosphoketolase
757	 59.97	0	824691..826064	-	457	62317718	-	BruAb2_0817	-	hypothetical protein
758	 56.39	0	826085..826921	-	278	62317719	-	BruAb2_0818	-	FTR1 family iron permease
759	 56.64	0	826928..827326	-	132	62317720	-	BruAb2_0819	-	hypothetical protein
760	 55.56	0	827330..827878	-	182	62317721	-	BruAb2_0820	-	membrane antigen
761	 58.61	0	828261..829823	-	520	62317722	guaA	BruAb2_0821	-	bifunctional GMP synthase/glutamine amidotransferase protein
762	 58.61	0	829932..830564	-	210	62317723	-	BruAb2_0822	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
763	 60.31	0	830561..831016	-	151	62317724	-	BruAb2_0823	-	hypothetical protein
764	 62.02	+1	831307..832596	-	429	62317725	-	BruAb2_0824	-	Sun family protein
765	 52.47	-1	832773..833399	-	208	62317726	-	BruAb2_0825	-	disulfide bond formation protein DsbB
766	 47.13	-2	833428..833601	-	57	62317727	-	BruAb2_0826	-	hypothetical protein
767	 57.00	0	833732..835231	-	499	62317728	katA	BruAb2_0827	-	KatA, catalase
768	 55.56	0	835401..836354	+	317	62317729	oxyR	BruAb2_0828	-	transcriptional regulator OxyR
769	 58.89	0	836423..837541	+	372	62317730	-	BruAb2_0829	-	cytochrome c family protein
770	 59.91	0	837701..839194	-	497	62317731	guaB	BruAb2_0830	-	inositol-5-monophosphate dehydrogenase
771	 60.25	0	839389..840744	+	451	62317732	-	BruAb2_0831	-	voltage gated chloride channel family protein
772	 61.61	+1	840866..841873	+	335	62317733	-	BruAb2_0832	-	hypothetical protein
773	 59.14	0	841993..843426	+	477	62317734	-	BruAb2_0833	-	phosphoglucomutase
774	 58.55	0	843423..844838	+	471	62317735	-	BruAb2_0834	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
775	 52.93	-1	844959..845846	-	295	62317736	-	BruAb2_0835	-	LysR family transcriptional regulator
776	 54.31	0	846075..846341	+	88	62317737	-	BruAb2_0836	-	hypothetical protein
777	 56.62	0	846636..848228	+	530	62317738	-	BruAb2_0837	-	EAL domain-containing protein
778	 46.43	-2	848305..848556	-	83	62317739	-	BruAb2_0838	-	hypothetical protein
779	 41.41	-2	848808..848906	-	32	62317740	-	BruAb2_0839	-	hypothetical protein
780	 49.28	-1	849068..849412	-	114	62317741	hdeA	BruAb2_0840	-	acid-resistance protein
781	 56.50	0	849560..850513	-	317	62317742	-	BruAb2_0841	-	glutaminase
782	 55.71	0	850549..852081	-	510	62317743	-	BruAb2_0842	-	glutamate/gamma-aminobutyrate antiporter
783	 46.55	-2	853997..854170	+	57	62317744	-	BruAb2_0844	-	hypothetical protein
784	 57.49	0	854245..854778	+	177	62317745	-	BruAb2_0845	-	hypothetical protein
785	 59.63	0	854964..856199	+	411	62317746	-	BruAb2_0846	-	HlyD family secretion protein
786	 55.29	0	859426..859926	+	166	62317747	-	BruAb2_0848	-	hypothetical protein
787	 50.00	-1	860068..860595	-	175	62317748	-	BruAb2_0849	-	hypothetical protein
788	 46.30	-2	860832..861047	-	71	62317749	-	BruAb2_0850	-	hypothetical protein
789	 37.22	-2	861053..861232	-	59	62317750	-	BruAb2_0851	-	hypothetical protein
790	 57.79	0	861544..862320	-	258	62317751	-	BruAb2_0852	-	spermidine/putrescine ABC transporter, permease protein
791	 59.56	0	862323..863561	-	412	62317752	-	BruAb2_0853	-	spermidine/putrescine ABC transporter, permease protein
792	 57.68	0	863495..864562	-	355	62317753	-	BruAb2_0854	-	spermidine/putrescine ABC transporter ATP-binding protein
793	 56.73	0	864636..865682	-	348	62317754	-	BruAb2_0855	-	spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein
794	 57.76	0	866058..866450	+	130	62317755	-	BruAb2_0856	-	hypothetical protein
795	 53.57	0	866779..866946	-	55	62317756	-	BruAb2_0857	-	hypothetical protein
796	 57.14	0	866990..867262	-	90	62317757	minE	BruAb2_0858	-	cell division topological specificity factor MinE
797	 60.42	0	867259..868074	-	271	62317758	minD	BruAb2_0859	-	MinD, septum site-determining protein
798	 61.94	+1	868102..868863	-	253	62317759	minC	BruAb2_0860	-	septum formation inhibitor
799	 45.45	-2	868993..869124	-	43	62317760	-	BruAb2_0861	-	hypothetical protein
800	 40.86	-2	869109..869201	-	30	62317761	-	BruAb2_0862	-	hypothetical protein
801	 42.22	-2	869335..869559	+	74	62317762	-	BruAb2_0863	-	hypothetical protein
802	 51.52	-1	869729..870718	-	329	62317763	nrdF	BruAb2_0864	-	ribonucleotide-diphosphate reductase subunit beta
803	 53.45	0	870733..872874	-	713	62317764	nrdE	BruAb2_0865	-	ribonucleotide-diphosphate reductase subunit alpha
804	 56.86	0	872925..873332	-	135	62317765	nrdI	BruAb2_0866	-	ribonucleotide reductase stimulatory protein
805	 56.76	0	873346..873567	-	73	62317766	nrdH	BruAb2_0867	-	NrdH, glutaredoxin-like protein NrdH
806	 59.94	0	873761..874087	+	108	62317767	-	BruAb2_0868	-	hypothetical protein
807	 42.74	-2	874141..874257	-	38	62317768	-	BruAb2_0869	-	hypothetical protein
808	 51.28	-1	876152..876463	-	103	62317769	-	BruAb2_0871	-	hypothetical protein
809	 60.08	0	876886..877932	-	348	62317770	-	BruAb2_0872	-	Gfo/Idh/MocA family oxidoreductase
810	 59.01	0	877941..878750	-	269	62317771	-	BruAb2_0873	-	hypothetical protein
811	 59.28	0	878789..879790	-	333	62317772	-	BruAb2_0874	-	sugar ABC transporter, ATP-binding protein
812	 57.90	0	881681..882946	-	421	62317773	-	BruAb2_0877	-	sugar ABC transporter, periplasmic sugar-binding protein
813	 47.86	-2	883173..883289	+	38	62317774	-	BruAb2_0878	-	hypothetical protein
814	 60.08	0	883297..884313	+	338	62317775	-	BruAb2_0879	-	sugar-binding protein
815	 55.41	0	884368..885078	-	236	62317776	ftrB	BruAb2_0880	-	transcriptional activator FtrB
816	 59.68	0	885368..888172	+	934	62317777	-	BruAb2_0881	-	nitrite extrusion protein
817	 60.59	0	888087..891821	+	1244	62317778	narG	BruAb2_0882	-	NarG, respiratory nitrate reductase, alpha subunit
818	 59.52	0	891848..893386	+	512	62317779	narH	BruAb2_0883	-	NarH, respiratory nitrate reductase, beta subunit
819	 61.02	0	893386..894093	+	235	62317780	narJ	BruAb2_0884	-	NarJ, respiratory nitrate reductase, delta subunit
820	 60.61	0	894104..894829	+	241	62317781	narI	BruAb2_0885	-	NarI, respiratory nitrate reductase, gamma subunit
821	 64.00	+1	894835..895770	+	311	62317782	-	BruAb2_0886	-	peptidyl-prolyl cis-trans isomerase
822	 63.50	+1	895767..896303	+	178	62317783	-	BruAb2_0887	-	hypothetical protein
823	 62.27	+1	896313..896903	-	196	62317784	-	BruAb2_0888	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
824	 60.00	0	898528..899052	+	174	62317785	-	BruAb2_0890	-	hypothetical protein
825	 60.63	0	899043..900020	+	325	62317786	-	BruAb2_0891	-	U32 family peptidase
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.