IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
633	 61.80	+1	689863..690849	-	328	62317594	galE-2	BruAb2_0679	-	GalE-2, UDP-glucose 4-epimerase
634	 56.11	0	690849..691862	-	337	62317595	-	BruAb2_0680	-	NAD-dependent epimerase/dehydratase family protein
635	 53.33	0	692179..692403	+	74	62317596	-	BruAb2_0681	-	hypothetical protein
636	 59.20	0	692656..693003	+	115	62317597	-	BruAb2_0682	-	hypothetical protein
637	 47.37	-2	693166..693336	+	56	62317598	-	BruAb2_0683	-	hypothetical protein
638	 54.56	0	693430..695007	+	525	62317599	-	BruAb2_0684	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
639	 53.30	0	695117..696694	+	525	62317600	-	BruAb2_0685	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
640	 58.23	0	696909..697832	+	307	62317601	-	BruAb2_0686	-	oligopeptide ABC transporter, permease protein
641	 58.20	0	697825..698958	+	377	62317602	-	BruAb2_0687	-	oligopeptide ABC transporter, permease protein
642	 58.47	0	698960..700570	+	536	62317603	-	BruAb2_0688	-	ABC transporter, ATP-binding protein
643	 57.43	0	700652..701290	+	212	62317604	alkB	BruAb2_0689	-	AlkB, alkylated DNA repair protein
644	 53.25	0	701304..701780	-	158	62317605	-	BruAb2_0690	-	IS711, transposase orfB
645	 58.01	0	701728..702039	-	103	62317606	-	BruAb2_0691	-	transposase orfA
646	 59.19	0	702293..703603	-	436	62317607	-	BruAb2_0692	-	major facilitator family transporter
647	 58.85	0	703850..704872	+	340	62317608	-	BruAb2_0693	-	D-aminopeptidase
648	 59.96	0	705167..707626	+	819	62317609	-	BruAb2_0694	-	cell division protein FtsK
649	 50.20	-1	707807..708061	-	84	62317610	-	BruAb2_0695	-	hypothetical protein
650	 58.48	0	708385..709080	+	231	62317611	-	BruAb2_0696	-	SurF1 family protein
651	 60.10	0	709069..710454	-	461	62317612	lpdA-3	BruAb2_0697	-	dihydrolipoamide dehydrogenase
652	 60.19	0	710468..711763	-	431	62317613	-	BruAb2_0698	-	branched-chain alpha-keto acid dehydrogenase subunit E2
653	 59.76	0	711764..712777	-	337	62317614	-	BruAb2_0699	-	2-oxoisovalerate dehydrogenase E1 component, beta subunit
654	 61.20	0	712881..714068	-	395	62317615	-	BruAb2_0700	-	2-oxoisovalerate dehydrogenase E1 component, alpha subunit
655	 45.24	-2	714365..714616	-	83	62317616	-	BruAb2_0701	-	hypothetical protein
656	 57.78	0	714669..715670	-	333	62317617	-	BruAb2_0702	-	sugar ABC transporter, ATP-binding protein
657	 57.33	0	715700..716770	-	356	62317618	-	BruAb2_0703	-	Gfo/Idh/MocA family oxidoreductase
658	 54.76	0	716767..717606	-	279	62317619	-	BruAb2_0704	-	sugar ABC transporter, permease protein
659	 55.66	0	717619..718563	-	314	62317620	-	BruAb2_0705	-	sugar ABC transporter, permease protein
660	 58.73	0	720192..720380	-	62	62317621	-	BruAb2_0707	-	hypothetical protein
661	 60.81	0	720544..721431	+	295	62317622	-	BruAb2_0708	-	hypothetical protein
662	 60.59	0	721428..722201	+	257	62317623	-	BruAb2_0709	-	GntR family transcriptional regulator
663	 60.90	0	722252..722407	-	51	62317624	ybgT	BruAb2_0710	-	YbgT
664	 58.70	0	722424..723578	-	384	62317625	cydB	BruAb2_0711	-	CydB, cytochrome d ubiquinol oxidase, subunit II
665	 55.70	0	723584..725161	-	525	62317626	cydA	BruAb2_0712	-	CydA, cytochrome d ubiquinol oxidase, subunit I
666	 62.33	+1	725304..726986	-	560	62317627	-	BruAb2_0713	-	ABC transporter, ATP-binding/permease protein
667	 61.31	0	726983..728719	-	578	62317628	cydD	BruAb2_0714	-	CydD, ABC transporter ATP-binding protein
668	 58.46	0	728716..729300	-	194	62317629	-	BruAb2_0715	-	hypothetical protein
669	 57.66	0	729328..729660	-	110	62317630	-	BruAb2_0716	-	hypothetical protein
670	 56.47	0	729677..730039	-	120	62317631	-	BruAb2_0717	-	putative monovalent cation/H+ antiporter subunit G
671	 60.64	0	730036..730317	-	93	62317632	phaF	BruAb2_0718	-	putative monovalent cation/H+ antiporter subunit F
672	 56.40	0	730314..730829	-	171	62317633	-	BruAb2_0719	-	putative monovalent cation/H+ antiporter subunit E
673	 59.42	0	730826..732454	-	542	62317634	-	BruAb2_0720	-	putative monovalent cation/H+ antiporter subunit D
674	 59.59	0	732457..732795	-	112	62317635	-	BruAb2_0721	-	putative monovalent cation/H+ antiporter subunit C
675	 57.49	0	732795..735713	-	972	62317636	-	BruAb2_0722	-	putative monovalent cation/H+ antiporter subunit A
676	 58.54	0	736154..737482	-	442	62317637	-	BruAb2_0723	-	hypothetical protein
677	 41.67	-2	737620..737739	-	39	62317638	-	BruAb2_0724	-	hypothetical protein
678	 56.00	0	737806..738405	+	199	62317639	-	BruAb2_0725	-	hypothetical protein
679	 60.69	0	738457..738975	-	172	62317640	mogA	BruAb2_0726	-	molybdenum cofactor biosynthesis protein
680	 48.25	-2	739028..739141	+	37	62317641	-	BruAb2_0727	-	hypothetical protein
681	 48.94	-1	739238..739519	+	93	62317642	-	BruAb2_0728	-	hypothetical protein
682	 50.00	-1	739497..739658	-	53	62317643	-	BruAb2_0729	-	hypothetical protein
683	 59.65	0	739876..740916	+	346	62317644	bioB	BruAb2_0730	-	BioB, biotin synthase
684	 61.04	0	740913..742049	+	378	62317645	bioF	BruAb2_0731	-	8-amino-7-oxononanoate synthase
685	 59.00	0	742046..742684	+	212	62317646	bioD	BruAb2_0732	-	dithiobiotin synthetase
686	 60.08	0	742681..743955	+	424	62317647	bioA	BruAb2_0733	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
687	 61.37	0	743952..744932	+	326	62317648	-	BruAb2_0734	-	3-oxoacyl-(acyl carrier protein) synthase II
688	 56.79	0	745776..746696	+	306	62317649	metA	BruAb2_0737	-	homoserine O-succinyltransferase
689	 55.72	0	747690..749123	+	477	62317650	-	BruAb2_0740	-	amino acid carrier family protein
690	 56.73	0	749170..749340	+	56	62317651	-	BruAb2_0741	-	hypothetical protein
691	 57.05	0	749404..750183	-	259	62317652	-	BruAb2_0742	-	glyoxalase
692	 59.33	0	750465..750914	+	149	62317653	-	BruAb2_0743	-	MarR family transcriptional regulator
693	 61.02	0	750997..752271	+	424	62317654	-	BruAb2_0744	-	pyridine nucleotide-disulphide oxidoreductase family protein
694	 55.27	0	752394..752744	-	116	62317655	-	BruAb2_0745	-	hypothetical protein
695	 51.60	-1	752939..753157	-	72	62317656	-	BruAb2_0746	-	hypothetical protein
696	 56.56	0	753169..753534	-	121	62317657	-	BruAb2_0747	-	hypothetical protein
697	 58.02	0	753858..754574	+	238	62317658	-	BruAb2_0748	-	transcriptional regulatory protein OmpR
698	 56.98	0	754571..755995	+	474	62317659	-	BruAb2_0749	-	osmolarity sensor protein EnvZ
699	 56.76	0	756067..757116	-	349	62317660	-	BruAb2_0750	-	HlyD family secretion protein
700	 57.11	0	757141..758772	-	543	62317661	-	BruAb2_0751	-	transporter
701	 55.62	0	758779..759267	-	162	62317662	-	BruAb2_0752	-	MarR family transcriptional regulator
702	 58.46	0	759614..760636	+	340	62317663	-	BruAb2_0753	-	ABC transporter, periplasmic substrate-binding protein
703	 60.68	0	760682..761449	+	255	62317664	-	BruAb2_0754	-	ABC transporter, ATP-binding protein
704	 60.44	0	761442..762260	+	272	62317665	-	BruAb2_0755	-	taurine ABC transporter permease
705	 59.40	0	762267..762665	-	132	62317666	-	BruAb2_0756	-	hypothetical protein
706	 57.23	0	762703..763836	-	377	62317667	-	BruAb2_0757	-	ABC transporter, permease protein
707	 60.85	0	764771..765715	-	314	62317668	-	BruAb2_0759	-	HlyD family secretion protein
708	 59.31	0	765720..766439	-	239	62317669	-	BruAb2_0760	-	TetR family transcriptional regulator
709	 52.31	-1	766742..766936	-	64	62317670	-	BruAb2_0761	-	hypothetical protein
710	 54.96	0	767024..768082	-	352	62317671	-	BruAb2_0762	-	hypothetical protein
711	 55.08	0	768328..769035	+	235	62317672	-	BruAb2_0763	-	GntR family transcriptional regulator
712	 59.13	0	769058..769495	-	145	62317673	-	BruAb2_0764	-	hypothetical protein
713	 59.80	0	769492..769899	-	135	62317674	-	BruAb2_0765	-	hypothetical protein
714	 54.94	0	769899..770222	-	107	62317675	-	BruAb2_0766	-	ArsR family transcriptional regulator
715	 56.58	0	770535..771476	+	313	62317676	-	BruAb2_0767	-	hypothetical protein
716	 57.78	0	772222..772716	+	164	62317677	def	BruAb2_0768	-	peptide deformylase
717	 57.14	0	772769..774007	-	412	62317678	serA-2	BruAb2_0769	-	D-3-phosphoglycerate dehydrogenase
718	 49.44	-1	774004..774183	-	59	62317679	-	BruAb2_0770	-	hypothetical protein
719	 60.47	0	774231..775214	-	327	62317680	-	BruAb2_0771	-	AraC family transcriptional regulator
720	 62.00	+1	777866..779065	+	399	62317681	phbA-2	BruAb2_0774	-	PhbA-2, acetyl-CoA acetyltransferase
721	 61.44	+1	779056..780183	+	375	62317682	-	BruAb2_0775	-	acyl-CoA dehydrogenase
722	 56.01	0	780184..780624	-	146	62317683	-	BruAb2_0776	-	methionine sulfoxide reductase B
723	 58.78	0	780709..781596	-	295	62317684	-	BruAb2_0777	-	LysR family transcriptional regulator
724	 52.27	-1	786019..786150	-	43	62317685	-	BruAb2_0781	-	hypothetical protein
725	 56.57	0	787198..788445	-	415	62317686	-	BruAb2_0784	-	exopolysaccharide biosynthesis protein Bme11
726	 59.00	0	788455..790644	-	729	62317687	-	BruAb2_0785	-	exopolysaccharide biosynthesis protein Bme12
727	 54.04	0	790681..791448	-	255	62317688	-	BruAb2_0786	-	LuxR family transcriptional regulator
728	 49.41	-1	791811..792569	+	252	62317689	-	BruAb2_0787	-	Crp/FNR family transcriptional regulator
729	 51.81	-1	792570..792845	-	91	62317690	-	BruAb2_0788	-	hypothetical protein
730	 56.64	0	792946..794112	-	388	62317691	-	BruAb2_0789	-	Bme15
731	 61.66	+1	794136..795713	-	525	62317692	-	BruAb2_0790	-	ROK family protein
732	 57.34	0	795873..796601	+	242	62317693	-	BruAb2_0791	-	GntR family transcriptional regulator
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.