IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
570	 57.65	0	617610..617975	-	121	62317531	-	BruAb2_0612	-	hypothetical protein
571	 52.69	-1	618078..618449	+	123	62317532	divK	BruAb2_0613	-	DivK, polar differentiation response regulator
572	 56.46	0	618570..619940	+	456	62317533	pleD	BruAb2_0614	-	response regulator PleD
573	 48.81	-1	620047..620214	-	55	62317534	rpmG	BruAb2_0615	-	50S ribosomal protein L33
574	 59.84	0	620373..621515	-	380	62317535	-	BruAb2_0616	-	major facilitator family transporter
575	 58.74	0	621590..622321	-	243	62317536	-	BruAb2_0617	-	MutT/nudix family protein
576	 58.23	0	622330..622791	-	153	62317537	-	BruAb2_0618	-	hypothetical protein
577	 60.25	0	622791..625142	-	783	62317538	-	BruAb2_0619	-	VacB/RNase II family exoribonuclease
578	 59.61	0	625146..627779	-	877	62317539	topA	BruAb2_0620	-	DNA topoisomerase I
579	 45.83	-2	628035..628202	+	55	62317540	-	BruAb2_0621	-	hypothetical protein
580	 61.76	+1	628212..629393	-	393	62317541	-	BruAb2_0622	-	DNA processing protein DprA
581	 59.24	0	629390..629995	-	201	62317542	-	BruAb2_0623	-	putative glycerol-3-phosphate acyltransferase PlsY
582	 61.38	+1	630070..631356	-	428	62317543	pyrC-2	BruAb2_0624	-	dihydroorotase
583	 60.06	0	631353..632321	-	322	62317544	pyrB	BruAb2_0625	-	aspartate carbamoyltransferase catalytic subunit
584	 61.11	0	632478..634133	+	551	62317545	-	BruAb2_0626	-	acyl-CoA dehydrogenase family protein
585	 60.94	0	634118..634606	-	162	62317546	-	BruAb2_0627	-	hypothetical protein
586	 56.16	0	634706..635419	+	237	62317547	-	BruAb2_0628	-	metal-dependent hydrolase
587	 55.56	0	635514..635801	+	95	62317548	gatC	BruAb2_0629	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
588	 60.26	0	635860..637341	+	493	62317549	gatA	BruAb2_0630	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
589	 50.22	-1	637366..637590	+	74	62317550	-	BruAb2_0631	-	hypothetical protein
590	 48.09	-2	637575..637757	+	60	62317551	-	BruAb2_0632	-	hypothetical protein
591	 60.14	0	637763..639862	-	699	62317552	parE	BruAb2_0633	-	DNA topoisomerase IV subunit B
592	 55.59	0	640167..641096	+	309	62317553	-	BruAb2_0634	-	hypothetical protein
593	 61.32	0	641100..641903	-	267	62317554	lipB	BruAb2_0635	-	lipoyltransferase
594	 55.12	0	642031..643407	-	458	62317555	-	BruAb2_0636	-	sensory box protein
595	 59.68	0	643740..644240	+	166	62317556	-	BruAb2_0637	-	hypothetical protein
596	 59.02	0	644744..646156	-	470	62317557	-	BruAb2_0638	-	hypothetical protein
597	 58.00	0	646153..648771	-	872	62317558	-	BruAb2_0639	-	hypothetical protein
598	 59.06	0	648944..649705	+	253	62317559	ccdA	BruAb2_0640	-	CcdA, cytochrome c-type biogenesis protein CdcA
599	 58.97	0	649787..651151	+	454	62317560	glmU	BruAb2_0641	-	GlmU, UDP-N-acetylglucosamine pyrophosphorylase
600	 58.55	0	651255..653078	+	607	62317561	glmS	BruAb2_0642	-	D-fructose-6-phosphate amidotransferase
601	 60.21	0	653233..655353	-	706	62317562	recG	BruAb2_0643	-	RecG, ATP-dependent DNA helicase
602	 54.17	0	655492..655779	+	95	62317563	-	BruAb2_0644	-	hypothetical protein
603	 60.72	0	655790..659302	+	1170	62317564	mfd	BruAb2_0645	-	Mfd, transcription-repair coupling factor
604	 50.00	-1	659374..659793	+	139	62317565	-	BruAb2_0646	-	fosfomycin resistance family protein
605	 58.52	0	659969..660643	-	224	62317566	-	BruAb2_0647	-	hypothetical protein
606	 57.14	0	660822..662669	-	615	62317567	-	BruAb2_0648	-	peptide ABC transporter, periplasmic peptide-binding protein
607	 57.77	0	663014..663631	+	205	62317568	-	BruAb2_0649	-	hypothetical protein
608	 53.69	0	663764..664102	-	112	62317569	-	BruAb2_0650	-	hypothetical protein
609	 61.88	+1	664175..665533	-	452	62317570	ubiH	BruAb2_0651	-	2-octaprenyl-6-methoxyphenyl hydroxylase
610	 55.81	0	665749..666549	+	266	62317571	pcs	BruAb2_0652	-	Pcs, phosphatidylcholine synthase
611	 59.95	0	667626..669188	+	520	62317572	-	BruAb2_0654	-	ABC transporter, ATP-binding protein
612	 57.53	0	669188..670270	+	360	62317573	-	BruAb2_0655	-	ABC transporter, permease protein
613	 61.15	0	670275..671180	+	301	62317574	-	BruAb2_0656	-	ABC transporter, permease protein
614	 55.94	0	671278..672330	+	350	62317575	-	BruAb2_0657	-	bmp family protein
615	 57.61	0	672470..673783	-	437	62317576	-	BruAb2_0658	-	hypothetical protein
616	 53.29	0	673947..674432	-	161	62317577	bfr	BruAb2_0659	-	Bfr, bacterioferritin
617	 45.51	-2	674398..674709	-	103	62317578	-	BruAb2_0660	-	hypothetical protein
618	 54.29	0	675165..675479	-	104	62317579	-	BruAb2_0661	-	hypothetical protein
619	 54.55	0	675596..676057	-	153	62317580	rirA	BruAb2_0662	-	iron-responsive transcriptional regulator
620	 56.43	0	676303..676761	-	152	62317581	-	BruAb2_0663	-	hypothetical protein
621	 41.56	-2	677234..677707	-	157	62317582	-	BruAb2_0664	-	hypothetical protein
622	 60.11	0	678405..678770	+	121	62317583	-	BruAb2_0665	-	transposase orfA ISBm1, interruption-N
623	 60.90	0	678851..679318	+	155	62317584	-	BruAb2_0666	-	hypothetical protein
624	 56.33	0	679282..679668	+	128	62317585	-	BruAb2_0667	-	IS66 family element, orf2
625	 57.44	0	679718..681289	+	523	62317586	-	BruAb2_0668	-	IS66 family element, orf3
626	 58.42	0	681286..681891	+	201	62317587	-	BruAb2_0669	-	IS66 family element, orf4
627	 58.25	0	682834..684057	+	407	62317588	-	BruAb2_0672	-	AraC family transcriptional regulator
628	 60.36	0	684440..685057	-	205	62317589	-	BruAb2_0674	-	hypothetical protein
629	 57.78	0	685054..685998	-	314	62317590	-	BruAb2_0675	-	endoglucanase family protein
630	 61.36	0	686048..686593	-	181	62317591	-	BruAb2_0676	-	hypothetical protein
631	 62.67	+1	686583..688007	-	474	62317592	ugd	BruAb2_0677	-	Ugd, UDP-glucose 6-dehydrogenase
632	 58.48	0	688022..689866	-	614	62317593	-	BruAb2_0678	-	glycosyl transferase, group 2 family protein
633	 61.80	+1	689863..690849	-	328	62317594	galE-2	BruAb2_0679	-	GalE-2, UDP-glucose 4-epimerase
634	 56.11	0	690849..691862	-	337	62317595	-	BruAb2_0680	-	NAD-dependent epimerase/dehydratase family protein
635	 53.33	0	692179..692403	+	74	62317596	-	BruAb2_0681	-	hypothetical protein
636	 59.20	0	692656..693003	+	115	62317597	-	BruAb2_0682	-	hypothetical protein
637	 47.37	-2	693166..693336	+	56	62317598	-	BruAb2_0683	-	hypothetical protein
638	 54.56	0	693430..695007	+	525	62317599	-	BruAb2_0684	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
639	 53.30	0	695117..696694	+	525	62317600	-	BruAb2_0685	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
640	 58.23	0	696909..697832	+	307	62317601	-	BruAb2_0686	-	oligopeptide ABC transporter, permease protein
641	 58.20	0	697825..698958	+	377	62317602	-	BruAb2_0687	-	oligopeptide ABC transporter, permease protein
642	 58.47	0	698960..700570	+	536	62317603	-	BruAb2_0688	-	ABC transporter, ATP-binding protein
643	 57.43	0	700652..701290	+	212	62317604	alkB	BruAb2_0689	-	AlkB, alkylated DNA repair protein
644	 53.25	0	701304..701780	-	158	62317605	-	BruAb2_0690	-	IS711, transposase orfB
645	 58.01	0	701728..702039	-	103	62317606	-	BruAb2_0691	-	transposase orfA
646	 59.19	0	702293..703603	-	436	62317607	-	BruAb2_0692	-	major facilitator family transporter
647	 58.85	0	703850..704872	+	340	62317608	-	BruAb2_0693	-	D-aminopeptidase
648	 59.96	0	705167..707626	+	819	62317609	-	BruAb2_0694	-	cell division protein FtsK
649	 50.20	-1	707807..708061	-	84	62317610	-	BruAb2_0695	-	hypothetical protein
650	 58.48	0	708385..709080	+	231	62317611	-	BruAb2_0696	-	SurF1 family protein
651	 60.10	0	709069..710454	-	461	62317612	lpdA-3	BruAb2_0697	-	dihydrolipoamide dehydrogenase
652	 60.19	0	710468..711763	-	431	62317613	-	BruAb2_0698	-	branched-chain alpha-keto acid dehydrogenase subunit E2
653	 59.76	0	711764..712777	-	337	62317614	-	BruAb2_0699	-	2-oxoisovalerate dehydrogenase E1 component, beta subunit
654	 61.20	0	712881..714068	-	395	62317615	-	BruAb2_0700	-	2-oxoisovalerate dehydrogenase E1 component, alpha subunit
655	 45.24	-2	714365..714616	-	83	62317616	-	BruAb2_0701	-	hypothetical protein
656	 57.78	0	714669..715670	-	333	62317617	-	BruAb2_0702	-	sugar ABC transporter, ATP-binding protein
657	 57.33	0	715700..716770	-	356	62317618	-	BruAb2_0703	-	Gfo/Idh/MocA family oxidoreductase
658	 54.76	0	716767..717606	-	279	62317619	-	BruAb2_0704	-	sugar ABC transporter, permease protein
659	 55.66	0	717619..718563	-	314	62317620	-	BruAb2_0705	-	sugar ABC transporter, permease protein
660	 58.73	0	720192..720380	-	62	62317621	-	BruAb2_0707	-	hypothetical protein
661	 60.81	0	720544..721431	+	295	62317622	-	BruAb2_0708	-	hypothetical protein
662	 60.59	0	721428..722201	+	257	62317623	-	BruAb2_0709	-	GntR family transcriptional regulator
663	 60.90	0	722252..722407	-	51	62317624	ybgT	BruAb2_0710	-	YbgT
664	 58.70	0	722424..723578	-	384	62317625	cydB	BruAb2_0711	-	CydB, cytochrome d ubiquinol oxidase, subunit II
665	 55.70	0	723584..725161	-	525	62317626	cydA	BruAb2_0712	-	CydA, cytochrome d ubiquinol oxidase, subunit I
666	 62.33	+1	725304..726986	-	560	62317627	-	BruAb2_0713	-	ABC transporter, ATP-binding/permease protein
667	 61.31	0	726983..728719	-	578	62317628	cydD	BruAb2_0714	-	CydD, ABC transporter ATP-binding protein
668	 58.46	0	728716..729300	-	194	62317629	-	BruAb2_0715	-	hypothetical protein
669	 57.66	0	729328..729660	-	110	62317630	-	BruAb2_0716	-	hypothetical protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.