IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
517	 55.70	0	562600..563547	-	315	62317478	-	BruAb2_0553	-	iron compound ABC transporter, periplasmic iron
518	 48.65	-2	563606..563716	-	36	62317479	-	BruAb2_0554	-	hypothetical protein
519	 58.72	0	564025..565383	-	452	62317480	-	BruAb2_0555	-	aldehyde dehydrogenase family protein
520	 55.62	0	565596..566120	-	174	62317481	-	BruAb2_0556	-	hypothetical protein
521	 61.05	0	566129..567784	-	551	62317482	-	BruAb2_0557	-	putative FAD-binding dehydrogenase
522	 54.59	0	567856..568617	-	253	62317483	-	BruAb2_0558	-	hypothetical protein
523	 57.46	0	568614..569645	-	343	62317484	-	BruAb2_0559	-	aminotransferase
524	 57.95	0	569764..570681	-	305	62317485	-	BruAb2_0560	-	hypothetical protein
525	 54.35	0	570940..571077	+	45	62317486	-	BruAb2_0561	-	hypothetical protein
526	 45.90	-2	571081..571263	-	60	62317487	-	BruAb2_0562	-	hypothetical protein
527	 54.81	0	571446..571934	+	162	62317488	-	BruAb2_0563	-	hypothetical protein
528	 49.70	-1	571939..572103	+	54	62317489	-	BruAb2_0564	-	hypothetical protein
529	 59.55	0	572372..573664	+	430	62317490	-	BruAb2_0565	-	uracil-xanthine permease
530	 53.67	0	573725..574324	+	199	62317491	-	BruAb2_0566	-	cytidine/deoxycytidylate deaminase family protein
531	 59.76	0	574402..576168	-	588	62317492	-	BruAb2_0567	-	TrkA family protein
532	 59.75	0	576430..577485	-	351	62317493	ugpC	BruAb2_0568	-	glycerol-3-phosphate transporter ATP-binding subunit
533	 55.71	0	577485..578333	-	282	62317494	ugpE	BruAb2_0569	-	UgpE, glycerol-3-phosphate ABC transporter, permease protein
534	 56.80	0	578345..579226	-	293	62317495	ugpA	BruAb2_0570	-	UgpA, glycerol-3-phosphate ABC transporter, permease protein
535	 56.30	0	579299..580600	-	433	62317496	ugpB	BruAb2_0571	-	UgbB, glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein
536	 58.21	0	580933..581973	-	346	62317497	-	BruAb2_0572	-	renal dipeptidase family protein
537	 58.93	0	582132..583877	+	581	62317498	ade	BruAb2_0573	-	Ade, adenine deaminase
538	 61.09	0	583878..584594	-	238	62317499	-	BruAb2_0574	-	branched-chain amino acid ABC transporter, ATP-binding protein
539	 59.73	0	584591..585340	-	249	62317500	-	BruAb2_0575	-	branched-chain amino acid ABC transporter, ATP-binding protein
540	 59.08	0	586319..587188	-	289	62317501	-	BruAb2_0577	-	branched-chain amino acid ABC transporter, permease protein
541	 58.48	0	587361..588533	-	390	62317502	-	BruAb2_0578	-	amino acid ABC transporter, periplasmic amino-acid binding protein
542	 59.91	0	588669..589733	-	354	62317503	-	BruAb2_0579	-	3-carboxy-cis,cis-muconate cycloisomerase
543	 57.77	0	589737..590354	-	205	62317504	pcaG	BruAb2_0580	-	protocatechuate 3,4-dioxygenase, alpha subunit
544	 59.24	0	590356..591096	-	246	62317505	pcaH	BruAb2_0581	-	PcaH, protocatechuate 3,4-dioxygenase, beta subunit
545	 59.95	0	591093..591509	-	138	62317506	pcaC	BruAb2_0582	-	PcaC, 4-carboxymuconolactone decarboxylase
546	 58.83	0	591513..592316	-	267	62317507	pcaL	BruAb2_0583	-	PcaL, 3-oxoadipate enol-lactone hydrolase
547	 57.87	0	592410..593318	+	302	62317508	pcaQ	BruAb2_0584	-	PcaQ, transcriptional regulator
548	 53.27	0	595012..595929	+	305	62317509	pobR	BruAb2_0586	-	PobR
549	 58.75	0	595936..596706	-	256	62317510	-	BruAb2_0587	-	transcriptional regulator PcaR
550	 57.77	0	596890..597597	+	235	62317511	pcaI	BruAb2_0588	-	PcaI, 3-oxoadipate CoA-transferase, alpha subunit
551	 57.83	0	597594..598283	+	229	62317512	pcaJ	BruAb2_0589	-	PcaJ, 3-oxoadipate CoA-transferase, beta subunit
552	 57.81	0	599527..601254	-	575	62317513	-	BruAb2_0591	-	twin-arginine translocation pathway signal sequence domain-containing protein
553	 57.07	0	602085..603188	+	367	62317514	-	BruAb2_0593	-	hypothetical protein
554	 56.33	0	603373..604146	+	257	62317515	-	BruAb2_0594	-	amino acid ABC transporter, periplasmic amino acid-binding protein
555	 55.38	0	604302..605063	+	253	62317516	-	BruAb2_0595	-	amino acid ABC transporter, periplasmic amino acid-binding protein
556	 61.55	+1	605152..606402	+	416	62317517	-	BruAb2_0596	-	amino acid dehydrogenase
557	 54.32	0	606428..606589	+	53	62317518	-	BruAb2_0597	-	hypothetical protein
558	 59.57	0	607817..608098	-	93	62317519	-	BruAb2_0599	-	hypothetical protein
559	 53.63	0	608474..609148	-	224	62317520	-	BruAb2_0600	-	exonuclease
560	 57.82	0	609242..609535	-	97	62317521	-	BruAb2_0601	-	hypothetical protein
561	 44.97	-2	609586..609774	-	62	62317522	-	BruAb2_0602	-	hypothetical protein
562	 53.59	0	609919..610224	-	101	62317523	-	BruAb2_0603	-	hypothetical protein
563	 60.32	0	610365..610742	+	125	62317524	-	BruAb2_0604	-	endonuclease V
564	 45.61	-2	610720..610833	+	37	62317525	-	BruAb2_0605	-	hypothetical protein
565	 51.52	-1	610869..610967	+	32	62317526	-	BruAb2_0606	-	hypothetical protein
566	 50.41	-1	612790..612912	+	40	62317527	-	BruAb2_0608	-	hypothetical protein
567	 55.84	0	612892..615081	-	729	62317528	-	BruAb2_0609	-	hypothetical protein
568	 59.19	0	615257..616594	-	445	62317529	-	BruAb2_0610	-	DNA polymerase IV
569	 59.22	0	617045..617554	+	169	62317530	-	BruAb2_0611	-	nucleoside diphosphate kinase regulator
570	 57.65	0	617610..617975	-	121	62317531	-	BruAb2_0612	-	hypothetical protein
571	 52.69	-1	618078..618449	+	123	62317532	divK	BruAb2_0613	-	DivK, polar differentiation response regulator
572	 56.46	0	618570..619940	+	456	62317533	pleD	BruAb2_0614	-	response regulator PleD
573	 48.81	-1	620047..620214	-	55	62317534	rpmG	BruAb2_0615	-	50S ribosomal protein L33
574	 59.84	0	620373..621515	-	380	62317535	-	BruAb2_0616	-	major facilitator family transporter
575	 58.74	0	621590..622321	-	243	62317536	-	BruAb2_0617	-	MutT/nudix family protein
576	 58.23	0	622330..622791	-	153	62317537	-	BruAb2_0618	-	hypothetical protein
577	 60.25	0	622791..625142	-	783	62317538	-	BruAb2_0619	-	VacB/RNase II family exoribonuclease
578	 59.61	0	625146..627779	-	877	62317539	topA	BruAb2_0620	-	DNA topoisomerase I
579	 45.83	-2	628035..628202	+	55	62317540	-	BruAb2_0621	-	hypothetical protein
580	 61.76	+1	628212..629393	-	393	62317541	-	BruAb2_0622	-	DNA processing protein DprA
581	 59.24	0	629390..629995	-	201	62317542	-	BruAb2_0623	-	putative glycerol-3-phosphate acyltransferase PlsY
582	 61.38	+1	630070..631356	-	428	62317543	pyrC-2	BruAb2_0624	-	dihydroorotase
583	 60.06	0	631353..632321	-	322	62317544	pyrB	BruAb2_0625	-	aspartate carbamoyltransferase catalytic subunit
584	 61.11	0	632478..634133	+	551	62317545	-	BruAb2_0626	-	acyl-CoA dehydrogenase family protein
585	 60.94	0	634118..634606	-	162	62317546	-	BruAb2_0627	-	hypothetical protein
586	 56.16	0	634706..635419	+	237	62317547	-	BruAb2_0628	-	metal-dependent hydrolase
587	 55.56	0	635514..635801	+	95	62317548	gatC	BruAb2_0629	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
588	 60.26	0	635860..637341	+	493	62317549	gatA	BruAb2_0630	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
589	 50.22	-1	637366..637590	+	74	62317550	-	BruAb2_0631	-	hypothetical protein
590	 48.09	-2	637575..637757	+	60	62317551	-	BruAb2_0632	-	hypothetical protein
591	 60.14	0	637763..639862	-	699	62317552	parE	BruAb2_0633	-	DNA topoisomerase IV subunit B
592	 55.59	0	640167..641096	+	309	62317553	-	BruAb2_0634	-	hypothetical protein
593	 61.32	0	641100..641903	-	267	62317554	lipB	BruAb2_0635	-	lipoyltransferase
594	 55.12	0	642031..643407	-	458	62317555	-	BruAb2_0636	-	sensory box protein
595	 59.68	0	643740..644240	+	166	62317556	-	BruAb2_0637	-	hypothetical protein
596	 59.02	0	644744..646156	-	470	62317557	-	BruAb2_0638	-	hypothetical protein
597	 58.00	0	646153..648771	-	872	62317558	-	BruAb2_0639	-	hypothetical protein
598	 59.06	0	648944..649705	+	253	62317559	ccdA	BruAb2_0640	-	CcdA, cytochrome c-type biogenesis protein CdcA
599	 58.97	0	649787..651151	+	454	62317560	glmU	BruAb2_0641	-	GlmU, UDP-N-acetylglucosamine pyrophosphorylase
600	 58.55	0	651255..653078	+	607	62317561	glmS	BruAb2_0642	-	D-fructose-6-phosphate amidotransferase
601	 60.21	0	653233..655353	-	706	62317562	recG	BruAb2_0643	-	RecG, ATP-dependent DNA helicase
602	 54.17	0	655492..655779	+	95	62317563	-	BruAb2_0644	-	hypothetical protein
603	 60.72	0	655790..659302	+	1170	62317564	mfd	BruAb2_0645	-	Mfd, transcription-repair coupling factor
604	 50.00	-1	659374..659793	+	139	62317565	-	BruAb2_0646	-	fosfomycin resistance family protein
605	 58.52	0	659969..660643	-	224	62317566	-	BruAb2_0647	-	hypothetical protein
606	 57.14	0	660822..662669	-	615	62317567	-	BruAb2_0648	-	peptide ABC transporter, periplasmic peptide-binding protein
607	 57.77	0	663014..663631	+	205	62317568	-	BruAb2_0649	-	hypothetical protein
608	 53.69	0	663764..664102	-	112	62317569	-	BruAb2_0650	-	hypothetical protein
609	 61.88	+1	664175..665533	-	452	62317570	ubiH	BruAb2_0651	-	2-octaprenyl-6-methoxyphenyl hydroxylase
610	 55.81	0	665749..666549	+	266	62317571	pcs	BruAb2_0652	-	Pcs, phosphatidylcholine synthase
611	 59.95	0	667626..669188	+	520	62317572	-	BruAb2_0654	-	ABC transporter, ATP-binding protein
612	 57.53	0	669188..670270	+	360	62317573	-	BruAb2_0655	-	ABC transporter, permease protein
613	 61.15	0	670275..671180	+	301	62317574	-	BruAb2_0656	-	ABC transporter, permease protein
614	 55.94	0	671278..672330	+	350	62317575	-	BruAb2_0657	-	bmp family protein
615	 57.61	0	672470..673783	-	437	62317576	-	BruAb2_0658	-	hypothetical protein
616	 53.29	0	673947..674432	-	161	62317577	bfr	BruAb2_0659	-	Bfr, bacterioferritin
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.