IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
482	 62.55	+1	520868..522691	-	607	62317443	iolD	BruAb2_0516	-	IolD, TPP-requiring enzyme
483	 60.48	0	522688..524628	-	646	62317444	-	BruAb2_0517	-	IolC myo-catabolism protein
484	 58.60	0	524720..525550	-	276	62317445	-	BruAb2_0518	-	SIS domain-containing protein
485	 58.91	0	525724..526728	+	334	62317446	idhA	BruAb2_0519	-	IdhA, myo-inositol 2-dehydrogenase
486	 61.80	+1	526826..527893	+	355	62317447	-	BruAb2_0520	-	hypothetical protein
487	 59.05	0	527923..528828	-	301	62317448	-	BruAb2_0521	-	transcriptional regulator OxyR
488	 56.22	0	528976..529530	+	184	62317449	ahpC	BruAb2_0522	-	AhpC, alkyl hydroperoxide reductase C
489	 55.49	0	529610..530137	+	175	62317450	ahpD	BruAb2_0523	-	AhpD, alkyl hydroperoxide reductase D
490	 58.94	0	530215..531495	-	426	62317451	-	BruAb2_0524	-	major facilitator family transporter
491	 59.60	0	531749..532144	+	131	62317452	-	BruAb2_0525	-	hypothetical protein
492	 58.69	0	532204..533808	+	534	62317453	-	BruAb2_0526	-	multicopper oxidase
493	 53.07	0	534081..534602	+	173	62317454	sodC	BruAb2_0527	-	SodC, superoxide dismutase, Cu-Zn
494	 58.88	0	536424..537527	+	367	62317455	-	BruAb2_0529	-	iron compound ABC transporter ATP-binding protein
495	 56.67	0	537653..538672	+	339	62317456	-	BruAb2_0530	-	iron compound ABC transporter periplasmic iron compound-binding protein
496	 60.85	0	538693..540462	+	589	62317457	-	BruAb2_0531	-	iron compound ABC transporter permease
497	 58.71	0	540640..541041	+	133	62317458	-	BruAb2_0532	-	hypothetical protein
498	 57.10	0	541111..541455	-	114	62317459	-	BruAb2_0533	-	hypothetical protein
499	 58.77	0	541565..542374	+	269	62317460	fdhD	BruAb2_0534	-	formate dehydrogenase accessory protein
500	 57.65	0	542375..542851	-	158	62317461	ribH	BruAb2_0535	-	riboflavin synthase subunit beta
501	 50.20	-1	542995..543243	+	82	62317462	-	BruAb2_0536	-	hypothetical protein
502	 57.11	0	543738..545003	+	421	62317463	-	BruAb2_0537	-	sugar ABC transporter, periplasmic sugar-binding protein
503	 54.57	0	545111..546160	+	349	62317464	-	BruAb2_0538	-	sugar ABC transporter permease
504	 57.49	0	547051..548172	+	373	62317465	-	BruAb2_0540	-	ABC transporter ATP-binding protein
505	 51.23	-1	548406..548690	+	94	62317466	-	BruAb2_0541	-	hypothetical protein
506	 58.13	0	548785..550143	+	452	62317467	-	BruAb2_0542	-	Bcr/CflA subfamily drug resistance transporter
507	 59.57	0	550342..550989	-	215	62317468	-	BruAb2_0543	-	ribosomal RNA large subunit methyltransferase J
508	 63.19	+1	551066..552562	-	498	62317469	-	BruAb2_0544	-	Ppx/GppA family phosphatase
509	 58.66	0	552804..553565	-	253	62317470	-	BruAb2_0545	-	amino acid ABC transporter, ATP-binding protein
510	 58.30	0	553562..554242	-	226	62317471	-	BruAb2_0546	-	amino acid ABC transporter, permease protein
511	 54.91	0	554422..555195	-	257	62317472	fliY	BruAb2_0547	-	FliY, amino acid ABC transporter, periplasmic amino acid-binding protein
512	 60.85	0	555482..559093	-	1203	62317473	-	BruAb2_0548	-	hydantoinase/oxoprolinase family protein
513	 60.17	0	559231..559830	+	199	62317474	-	BruAb2_0549	-	hypothetical protein
514	 56.39	0	559883..560641	-	252	62317475	-	BruAb2_0550	-	iron compound ABC transporter, ATP-binding protein
515	 58.04	0	560638..561588	-	316	62317476	-	BruAb2_0551	-	iron compound ABC transporter, permease protein
516	 59.61	0	561581..562543	-	320	62317477	-	BruAb2_0552	-	iron compound ABC transporter, permease protein
517	 55.70	0	562600..563547	-	315	62317478	-	BruAb2_0553	-	iron compound ABC transporter, periplasmic iron
518	 48.65	-2	563606..563716	-	36	62317479	-	BruAb2_0554	-	hypothetical protein
519	 58.72	0	564025..565383	-	452	62317480	-	BruAb2_0555	-	aldehyde dehydrogenase family protein
520	 55.62	0	565596..566120	-	174	62317481	-	BruAb2_0556	-	hypothetical protein
521	 61.05	0	566129..567784	-	551	62317482	-	BruAb2_0557	-	putative FAD-binding dehydrogenase
522	 54.59	0	567856..568617	-	253	62317483	-	BruAb2_0558	-	hypothetical protein
523	 57.46	0	568614..569645	-	343	62317484	-	BruAb2_0559	-	aminotransferase
524	 57.95	0	569764..570681	-	305	62317485	-	BruAb2_0560	-	hypothetical protein
525	 54.35	0	570940..571077	+	45	62317486	-	BruAb2_0561	-	hypothetical protein
526	 45.90	-2	571081..571263	-	60	62317487	-	BruAb2_0562	-	hypothetical protein
527	 54.81	0	571446..571934	+	162	62317488	-	BruAb2_0563	-	hypothetical protein
528	 49.70	-1	571939..572103	+	54	62317489	-	BruAb2_0564	-	hypothetical protein
529	 59.55	0	572372..573664	+	430	62317490	-	BruAb2_0565	-	uracil-xanthine permease
530	 53.67	0	573725..574324	+	199	62317491	-	BruAb2_0566	-	cytidine/deoxycytidylate deaminase family protein
531	 59.76	0	574402..576168	-	588	62317492	-	BruAb2_0567	-	TrkA family protein
532	 59.75	0	576430..577485	-	351	62317493	ugpC	BruAb2_0568	-	glycerol-3-phosphate transporter ATP-binding subunit
533	 55.71	0	577485..578333	-	282	62317494	ugpE	BruAb2_0569	-	UgpE, glycerol-3-phosphate ABC transporter, permease protein
534	 56.80	0	578345..579226	-	293	62317495	ugpA	BruAb2_0570	-	UgpA, glycerol-3-phosphate ABC transporter, permease protein
535	 56.30	0	579299..580600	-	433	62317496	ugpB	BruAb2_0571	-	UgbB, glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein
536	 58.21	0	580933..581973	-	346	62317497	-	BruAb2_0572	-	renal dipeptidase family protein
537	 58.93	0	582132..583877	+	581	62317498	ade	BruAb2_0573	-	Ade, adenine deaminase
538	 61.09	0	583878..584594	-	238	62317499	-	BruAb2_0574	-	branched-chain amino acid ABC transporter, ATP-binding protein
539	 59.73	0	584591..585340	-	249	62317500	-	BruAb2_0575	-	branched-chain amino acid ABC transporter, ATP-binding protein
540	 59.08	0	586319..587188	-	289	62317501	-	BruAb2_0577	-	branched-chain amino acid ABC transporter, permease protein
541	 58.48	0	587361..588533	-	390	62317502	-	BruAb2_0578	-	amino acid ABC transporter, periplasmic amino-acid binding protein
542	 59.91	0	588669..589733	-	354	62317503	-	BruAb2_0579	-	3-carboxy-cis,cis-muconate cycloisomerase
543	 57.77	0	589737..590354	-	205	62317504	pcaG	BruAb2_0580	-	protocatechuate 3,4-dioxygenase, alpha subunit
544	 59.24	0	590356..591096	-	246	62317505	pcaH	BruAb2_0581	-	PcaH, protocatechuate 3,4-dioxygenase, beta subunit
545	 59.95	0	591093..591509	-	138	62317506	pcaC	BruAb2_0582	-	PcaC, 4-carboxymuconolactone decarboxylase
546	 58.83	0	591513..592316	-	267	62317507	pcaL	BruAb2_0583	-	PcaL, 3-oxoadipate enol-lactone hydrolase
547	 57.87	0	592410..593318	+	302	62317508	pcaQ	BruAb2_0584	-	PcaQ, transcriptional regulator
548	 53.27	0	595012..595929	+	305	62317509	pobR	BruAb2_0586	-	PobR
549	 58.75	0	595936..596706	-	256	62317510	-	BruAb2_0587	-	transcriptional regulator PcaR
550	 57.77	0	596890..597597	+	235	62317511	pcaI	BruAb2_0588	-	PcaI, 3-oxoadipate CoA-transferase, alpha subunit
551	 57.83	0	597594..598283	+	229	62317512	pcaJ	BruAb2_0589	-	PcaJ, 3-oxoadipate CoA-transferase, beta subunit
552	 57.81	0	599527..601254	-	575	62317513	-	BruAb2_0591	-	twin-arginine translocation pathway signal sequence domain-containing protein
553	 57.07	0	602085..603188	+	367	62317514	-	BruAb2_0593	-	hypothetical protein
554	 56.33	0	603373..604146	+	257	62317515	-	BruAb2_0594	-	amino acid ABC transporter, periplasmic amino acid-binding protein
555	 55.38	0	604302..605063	+	253	62317516	-	BruAb2_0595	-	amino acid ABC transporter, periplasmic amino acid-binding protein
556	 61.55	+1	605152..606402	+	416	62317517	-	BruAb2_0596	-	amino acid dehydrogenase
557	 54.32	0	606428..606589	+	53	62317518	-	BruAb2_0597	-	hypothetical protein
558	 59.57	0	607817..608098	-	93	62317519	-	BruAb2_0599	-	hypothetical protein
559	 53.63	0	608474..609148	-	224	62317520	-	BruAb2_0600	-	exonuclease
560	 57.82	0	609242..609535	-	97	62317521	-	BruAb2_0601	-	hypothetical protein
561	 44.97	-2	609586..609774	-	62	62317522	-	BruAb2_0602	-	hypothetical protein
562	 53.59	0	609919..610224	-	101	62317523	-	BruAb2_0603	-	hypothetical protein
563	 60.32	0	610365..610742	+	125	62317524	-	BruAb2_0604	-	endonuclease V
564	 45.61	-2	610720..610833	+	37	62317525	-	BruAb2_0605	-	hypothetical protein
565	 51.52	-1	610869..610967	+	32	62317526	-	BruAb2_0606	-	hypothetical protein
566	 50.41	-1	612790..612912	+	40	62317527	-	BruAb2_0608	-	hypothetical protein
567	 55.84	0	612892..615081	-	729	62317528	-	BruAb2_0609	-	hypothetical protein
568	 59.19	0	615257..616594	-	445	62317529	-	BruAb2_0610	-	DNA polymerase IV
569	 59.22	0	617045..617554	+	169	62317530	-	BruAb2_0611	-	nucleoside diphosphate kinase regulator
570	 57.65	0	617610..617975	-	121	62317531	-	BruAb2_0612	-	hypothetical protein
571	 52.69	-1	618078..618449	+	123	62317532	divK	BruAb2_0613	-	DivK, polar differentiation response regulator
572	 56.46	0	618570..619940	+	456	62317533	pleD	BruAb2_0614	-	response regulator PleD
573	 48.81	-1	620047..620214	-	55	62317534	rpmG	BruAb2_0615	-	50S ribosomal protein L33
574	 59.84	0	620373..621515	-	380	62317535	-	BruAb2_0616	-	major facilitator family transporter
575	 58.74	0	621590..622321	-	243	62317536	-	BruAb2_0617	-	MutT/nudix family protein
576	 58.23	0	622330..622791	-	153	62317537	-	BruAb2_0618	-	hypothetical protein
577	 60.25	0	622791..625142	-	783	62317538	-	BruAb2_0619	-	VacB/RNase II family exoribonuclease
578	 59.61	0	625146..627779	-	877	62317539	topA	BruAb2_0620	-	DNA topoisomerase I
579	 45.83	-2	628035..628202	+	55	62317540	-	BruAb2_0621	-	hypothetical protein
580	 61.76	+1	628212..629393	-	393	62317541	-	BruAb2_0622	-	DNA processing protein DprA
581	 59.24	0	629390..629995	-	201	62317542	-	BruAb2_0623	-	putative glycerol-3-phosphate acyltransferase PlsY
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.