IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
297	 59.34	0	315075..316193	+	372	62317258	-	BruAb2_0317	-	HlyD family secretion protein
298	 58.08	0	317206..320280	+	1024	62317259	-	BruAb2_0319	-	AcrB/AcrD/AcrF multidrug efflux protein
299	 62.40	+1	320425..321150	+	241	62317260	-	BruAb2_0320	-	GntR family transcriptional regulator
300	 58.43	0	321153..322184	+	343	62317261	nagB	BruAb2_0321	-	NagB, glucosamine-fructose-6-phosphate aminotransferase
301	 62.38	+1	322181..323347	+	388	62317262	nagA	BruAb2_0322	-	NagA, N-acetylglucosamine-6-phosphate deacetylase
302	 61.45	+1	323355..324083	+	242	62317263	-	BruAb2_0323	-	hypothetical protein
303	 55.14	0	324227..325111	+	294	62317264	purU	BruAb2_0324	-	formyltetrahydrofolate deformylase
304	 60.15	0	325335..326837	-	500	62317265	-	BruAb2_0325	-	aldehyde dehydrogenase family protein
305	 59.89	0	326911..328311	-	466	62317266	-	BruAb2_0326	-	hypothetical protein
306	 56.70	0	328459..329391	+	310	62317267	-	BruAb2_0327	-	LysR family transcriptional regulator
307	 59.35	0	329491..330774	+	427	62317268	-	BruAb2_0328	-	oxidoreductase
308	 54.69	0	333380..333688	+	102	62317269	-	BruAb2_0330	-	ArsR family transcriptional regulator
309	 58.96	0	333732..334847	+	371	62317270	-	BruAb2_0331	-	oxidoreductase, FMN-binding
310	 60.96	0	334885..335322	-	145	62317271	-	BruAb2_0332	-	AsnC family transcriptional regulator
311	 59.83	0	335453..336373	+	306	62317272	rocF	BruAb2_0333	-	RocF, arginase
312	 56.82	0	336412..337488	+	358	62317273	arcB	BruAb2_0334	-	ornithine cyclodeaminase
313	 55.63	0	337501..337926	-	141	62317274	-	BruAb2_0335	-	hypothetical protein
314	 53.92	0	337998..338507	+	169	62317275	-	BruAb2_0336	-	hypothetical protein
315	 51.04	-1	338722..338913	+	63	62317276	-	BruAb2_0337	-	hypothetical protein
316	 52.12	-1	338921..339463	+	180	62317277	-	BruAb2_0338	-	hypothetical protein
317	 60.10	0	339696..340685	+	329	62317278	trx-2	BruAb2_0339	-	Trx-2, thioredoxin
318	 57.59	0	340749..341453	+	234	62317279	-	BruAb2_0340	-	ATP-dependent protease La
319	 61.54	+1	341630..341824	+	64	62317280	-	BruAb2_0341	-	hypothetical protein
320	 59.84	0	342124..343236	+	370	62317281	leuB	BruAb2_0342	-	3-isopropylmalate dehydrogenase
321	 58.31	0	343377..344429	+	350	62317282	-	BruAb2_0343	-	Ada family regulatory protein
322	 58.93	0	344487..346385	-	632	62317283	-	BruAb2_0344	-	major facilitator family transporter
323	 56.91	0	346908..347942	+	344	62317284	asd	BruAb2_0345	-	aspartate-semialdehyde dehydrogenase
324	 58.55	0	348006..348461	-	151	62317285	-	BruAb2_0346	-	MarR family transcriptional regulator
325	 62.88	+1	348667..349089	+	140	62317286	ohr	BruAb2_0347	-	Ohr, organic hydroperoxide resistance protein
326	 54.85	0	349140..349562	-	140	62317287	-	BruAb2_0348	-	hypothetical protein
327	 56.27	0	349648..350253	-	201	62317288	leuD	BruAb2_0349	-	isopropylmalate isomerase small subunit
328	 50.24	-1	350318..350524	-	68	62317289	-	BruAb2_0350	-	hypothetical protein
329	 60.50	0	350678..351553	+	291	62317290	-	BruAb2_0351	-	citrate lyase beta chain
330	 55.56	0	351571..351777	+	68	62317291	-	BruAb2_0352	-	hypothetical protein
331	 59.04	0	351777..352130	+	117	62317292	-	BruAb2_0353	-	glyoxalase family protein
332	 59.10	0	352159..354207	-	682	62317293	dcp	BruAb2_0354	-	Dcp, peptidyl-dipeptidase Dcp
333	 51.52	-1	354302..354466	+	54	62317294	-	BruAb2_0355	-	hypothetical protein
334	 59.16	0	354533..355930	+	465	62317295	mgtE	BruAb2_0356	-	MtgE, magnesium transporter
335	 57.53	0	356173..357999	+	608	62317296	-	BruAb2_0357	-	GTP-binding protein TypA
336	 57.99	0	358151..358738	+	195	62317297	-	BruAb2_0358	-	hypothetical protein
337	 53.33	0	358936..359175	+	79	62317298	-	BruAb2_0359	-	hypothetical protein
338	 59.63	0	359172..360194	+	340	62317299	fbp	BruAb2_0360	-	fructose-1,6-bisphosphatase
339	 59.62	0	360225..361289	+	354	62317300	fbaA	BruAb2_0361	-	fructose-1,6-bisphosphate aldolase
340	 59.43	0	361356..361811	-	151	62317301	-	BruAb2_0362	-	ribose-5-phosphate isomerase B
341	 59.79	0	361823..362593	-	256	62317302	tpiA	BruAb2_0363	-	triosephosphate isomerase
342	 57.52	0	362606..363370	-	254	62317303	-	BruAb2_0364	-	DeoR family transcriptional regulator
343	 59.83	0	363458..364408	-	316	62317304	eryD	BruAb2_0365	-	erythritol transcriptional regulator
344	 58.84	0	364436..365368	-	310	62317305	eryC	BruAb2_0366	-	EryC, D-erythrulose-1-phosphate dehydrogenase
345	 60.44	0	365376..366884	-	502	62317306	eryB	BruAb2_0367	-	glycerol-3-phosphate dehydrogenase
346	 62.70	+1	366897..368459	-	520	62317307	eryA	BruAb2_0368	-	EryA, erythritol kinase
347	 50.33	-1	368443..368595	-	50	62317308	-	BruAb2_0369	-	hypothetical protein
348	 58.45	0	369193..369849	+	218	62317309	-	BruAb2_0370	-	hypothetical protein
349	 59.03	0	369846..371390	+	514	62317310	rbsA-3	BruAb2_0371	-	RbsA-3, ribose ABC transporter, ATP-binding protein
350	 59.85	0	371414..372454	+	346	62317311	rbsC-3	BruAb2_0372	-	ribose ABC transporter, permease protein
351	 57.28	0	372621..373568	+	315	62317312	rbsB-2	BruAb2_0373	-	RbsB-2, ribose ABC transporter, periplasmic D-ribose-binding protein
352	 58.66	0	373749..374597	+	282	62317313	-	BruAb2_0374	-	DeoR family transcriptional regulator
353	 36.46	-2	374889..374984	-	31	62317314	-	BruAb2_0375	-	hypothetical protein
354	 58.50	0	376661..377995	+	444	62317315	-	BruAb2_0377	-	oxidoreductase, FAD-binding
355	 53.33	0	378027..378446	+	139	62317316	-	BruAb2_0378	-	hypothetical protein
356	 55.69	0	378495..379505	+	336	62317317	-	BruAb2_0379	-	epimerase/dehydratase family protein
357	 57.66	0	379516..380970	+	484	62317318	-	BruAb2_0380	-	aminotransferase, class III
358	 53.91	0	382929..383375	-	148	62317319	-	BruAb2_0382	-	hypothetical protein
359	 42.96	-2	383637..383771	+	44	62317320	-	BruAb2_0383	-	hypothetical protein
360	 53.56	0	383785..384219	-	144	62317321	-	BruAb2_0384	-	IS711, transposase orfB
361	 58.33	0	384209..384520	-	103	62317322	-	BruAb2_0385	-	IS711 orfA transposase
362	 54.85	0	385055..386950	-	631	62317323	-	BruAb2_0386	-	hypothetical protein
363	 57.63	0	386937..387866	-	309	62317324	-	BruAb2_0387	-	hypothetical protein
364	 57.76	0	387874..388614	-	246	62317325	-	BruAb2_0388	-	hypothetical protein
365	 59.36	0	388611..391580	-	989	62317326	hsdR	BruAb2_0389	-	HsdR, type I restriction-modification enzyme, R subunit
366	 52.61	-1	391577..392800	-	407	62317327	hsdS	BruAb2_0390	-	HsdS, type I restriction-modification system, S subunit
367	 55.66	0	392790..394316	-	508	62317328	hsdM	BruAb2_0391	-	HsdM, type I restriction-modification system, M subunit
368	 59.40	0	394324..394956	-	210	62317329	-	BruAb2_0392	-	hypothetical protein
369	 58.87	0	395117..395257	+	46	62317330	-	BruAb2_0393	-	hypothetical protein
370	 54.17	0	395481..395768	+	95	62317331	-	BruAb2_0394	-	hypothetical protein
371	 58.33	0	396051..396206	-	51	62317332	-	BruAb2_0395	-	hypothetical protein
372	 62.34	+1	396275..396505	+	76	62317333	-	BruAb2_0396	-	hypothetical protein
373	 60.68	0	396769..396885	-	38	62317334	-	BruAb2_0397	-	hypothetical protein
374	 52.50	-1	397024..397524	+	166	62317335	-	BruAb2_0398	-	hypothetical protein
375	 56.15	0	397531..398253	-	240	62317336	-	BruAb2_0399	-	hypothetical protein
376	 52.15	-1	398231..398788	-	185	62317337	-	BruAb2_0400	-	hypothetical protein
377	 47.83	-2	399112..399249	-	45	62317338	-	BruAb2_0401	-	hypothetical protein
378	 58.00	0	399308..400276	-	322	62317339	-	BruAb2_0402	-	2-nitropropane dioxygenase family protein
379	 48.15	-2	400423..400584	+	53	62317340	-	BruAb2_0403	-	hypothetical protein
380	 56.99	0	400782..401804	+	340	62317341	-	BruAb2_0404	-	hypothetical protein
381	 54.42	0	401900..402046	+	48	62317342	-	BruAb2_0405	-	hypothetical protein
382	 60.99	0	402056..404611	+	851	62317343	-	BruAb2_0406	-	DEAD-box ATP dependent DNA helicase
383	 62.06	+1	404608..405324	+	238	62317344	-	BruAb2_0407	-	hypothetical protein
384	 56.57	0	405422..406213	-	263	62317345	-	BruAb2_0408	-	hypothetical protein
385	 57.62	0	406248..407198	-	316	62317346	-	BruAb2_0409	-	hypothetical protein
386	 60.32	0	407492..410233	-	913	62317347	-	BruAb2_0410	-	peptidoglycan-binding protein
387	 55.07	0	410232..410369	+	45	62317348	-	BruAb2_0411	-	hypothetical protein
388	 59.09	0	410663..411058	+	131	62317349	-	BruAb2_0412	-	MerR family transcriptional regulator
389	 52.50	-1	411113..411472	-	119	62317350	-	BruAb2_0413	-	hypothetical protein
390	 56.28	0	411488..411901	-	137	62317351	-	BruAb2_0414	-	CrcB family protein
391	 55.72	0	411898..412299	-	133	62317352	-	BruAb2_0415	-	CrcB family protein
392	 55.72	0	417030..418235	-	401	62317353	uxuA	BruAb2_0418	-	mannonate dehydratase
393	 55.94	0	418296..419069	-	257	62317354	-	BruAb2_0419	-	GntR family transcriptional regulator
394	 55.27	0	420803..422302	+	499	62317355	-	BruAb2_0421	-	D-mannonate oxidoreductase
395	 55.25	0	422462..423643	+	393	62317356	-	BruAb2_0422	-	ABC transporter, periplasmic substrate-binding protein
396	 54.33	0	423688..424773	+	361	62317357	-	BruAb2_0423	-	ABC transporter, ATP-binding protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.