IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 61.33	0	241101..242075	-	324	62317191	-	BruAb2_0246	-	WD repeat-containing protein
231	 59.04	0	242194..243333	-	379	62317192	-	BruAb2_0247	-	cobalamin synthesis protein/P47K family protein
232	 57.07	0	243569..244339	-	256	62317193	-	BruAb2_0248	-	creatinine amidohydrolase
233	 61.08	0	245156..246175	+	339	62317194	-	BruAb2_0250	-	transcriptional regulator
234	 59.18	0	246261..247235	+	324	62317195	-	BruAb2_0251	-	glycerate dehydrogenase
235	 59.69	0	247337..248110	-	257	62317196	-	BruAb2_0252	-	glutamine amidotransferase, class I
236	 60.27	0	248345..249094	+	249	62317197	-	BruAb2_0253	-	2-deoxy-d-gluconate 3-dehydrogenase
237	 50.35	-1	249075..249215	+	46	62317198	-	BruAb2_0254	-	hypothetical protein
238	 52.30	-1	252009..253226	+	405	62317199	-	BruAb2_0256	-	hypothetical protein
239	 51.35	-1	253280..253390	+	36	62317200	-	BruAb2_0257	-	hypothetical protein
240	 56.22	0	253498..254244	+	248	62317201	-	BruAb2_0258	-	hypothetical protein
241	 51.56	-1	254448..254672	+	74	62317202	-	BruAb2_0259	-	hypothetical protein
242	 60.33	0	254896..256173	+	425	62317203	pntA	BruAb2_0260	-	PntA, NAD(P) transhydrogenase, alpha subunit
243	 57.86	0	256173..256592	+	139	62317204	pntAB	BruAb2_0261	-	PntAB, NAD(P) transhydrogenase, alpha2 subunit
244	 59.31	0	256605..258005	+	466	62317205	pntB	BruAb2_0262	-	PntB, NAD(P) transhydrogenase, beta subunit
245	 60.21	0	258107..259423	-	438	62317206	-	BruAb2_0263	-	oxidoreductase
246	 59.38	0	259619..260290	+	223	62317207	-	BruAb2_0264	-	HAD superfamily hydrolase
247	 57.86	0	260365..260841	+	158	62317208	-	BruAb2_0265	-	nodulation protein N
248	 59.65	0	262464..262691	+	75	62317209	rpsU	BruAb2_0267	-	30S ribosomal protein S21
249	 46.30	-2	262965..263126	-	53	62317210	-	BruAb2_0268	-	hypothetical protein
250	 56.42	0	263220..264107	+	295	62317211	-	BruAb2_0269	-	TPR domain-containing protein
251	 58.58	0	264199..264606	+	135	62317212	-	BruAb2_0270	-	glyoxalase family protein
252	 59.91	0	264619..265284	-	221	62317213	-	BruAb2_0271	-	ABC transporter, permease protein
253	 59.30	0	265265..266323	-	352	62317214	-	BruAb2_0272	-	ABC transporter, ATP-binding protein
254	 56.99	0	266788..267624	-	278	62317215	-	BruAb2_0273	-	YaeC family lipoprotein
255	 46.53	-2	267718..267861	-	47	62317216	-	BruAb2_0274	-	hypothetical protein
256	 59.54	0	267858..269456	-	532	62317217	-	BruAb2_0275	-	GMC family oxidoreductase
257	 57.52	0	269520..270503	-	327	62317218	-	BruAb2_0276	-	branched-chain amino acid ABC transporter, permease protein
258	 59.35	0	270505..271392	-	295	62317219	-	BruAb2_0277	-	branched-chain amino acid ABC transporter, permease protein
259	 60.74	0	271397..272122	-	241	62317220	-	BruAb2_0278	-	branched-chain amino acid ABC transporter ATP-binding protein
260	 61.27	0	272115..272930	-	271	62317221	-	BruAb2_0279	-	branched-chain amino acid ABC transporter, ATP-binding protein
261	 58.46	0	272943..274148	-	401	62317222	-	BruAb2_0280	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
262	 58.36	0	274413..275327	+	304	62317223	-	BruAb2_0281	-	LysR family transcriptional regulator
263	 59.86	0	275543..275983	-	146	62317224	-	BruAb2_0282	-	AsnC family transcriptional regulator
264	 52.78	-1	275997..276140	+	47	62317225	-	BruAb2_0283	-	hypothetical protein
265	 59.99	0	276234..279305	+	1023	62317226	-	BruAb2_0284	-	hypothetical protein
266	 58.53	0	279409..280428	+	339	62317227	-	BruAb2_0285	-	amino acid ABC transporter, periplasmic amino acid-binding protein
267	 60.05	0	280459..282015	-	518	62317228	-	BruAb2_0286	-	D-aminopeptidase
268	 54.76	0	282040..282207	-	55	62317229	-	BruAb2_0287	-	hypothetical protein
269	 61.45	+1	282431..284116	+	561	62317230	-	BruAb2_0288	-	acetolactate synthase 2 catalytic subunit
270	 61.98	+1	284129..284854	-	241	62317231	-	BruAb2_0289	-	GntR family transcriptional regulator
271	 52.04	-1	284879..285172	-	97	62317232	-	BruAb2_0290	-	hypothetical protein
272	 58.61	0	285442..286434	+	330	62317233	-	BruAb2_0291	-	hypothetical protein
273	 60.04	0	286443..287378	+	311	62317234	-	BruAb2_0292	-	D-galactose 1-dehydrogenase
274	 58.53	0	287475..289280	+	601	62317235	-	BruAb2_0293	-	dihydroxy-acid dehydratase
275	 62.04	+1	289295..290224	+	309	62317236	dgoK	BruAb2_0294	-	DgoK, 2-dehydro-3-deoxygalactonokinase
276	 60.82	0	290221..290853	+	210	62317237	-	BruAb2_0295	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
277	 56.04	0	292208..293797	+	529	62317238	-	BruAb2_0297	-	sugar ABC transporter, ATP-binding protein
278	 57.18	0	293797..294987	+	396	62317239	-	BruAb2_0298	-	sugar ABC transporter, permease protein
279	 57.48	0	295138..296019	-	293	62317240	-	BruAb2_0299	-	D-amino acid aminotransferase
280	 58.01	0	296107..296730	-	207	62317241	-	BruAb2_0300	-	hypothetical protein
281	 61.05	0	296737..298410	-	557	62317242	hutU	BruAb2_0301	-	urocanate hydratase
282	 58.55	0	298421..299221	-	266	62317243	hutG	BruAb2_0302	-	HutG, formiminoglutamase
283	 61.59	+1	299223..300758	-	511	62317244	hutH	BruAb2_0303	-	histidine ammonia-lyase
284	 59.85	0	300783..302000	-	405	62317245	hutI	BruAb2_0304	-	imidazolonepropionase
285	 59.05	0	302131..303495	+	454	62317246	-	BruAb2_0305	-	N-formimino-L-glutamate deiminase
286	 59.54	0	303507..304250	+	247	62317247	hutC	BruAb2_0306	-	HutC, histidine utilization repressor
287	 59.89	0	304321..305649	-	442	62317248	-	BruAb2_0307	-	beta alanine--pyruvate transaminase
288	 59.74	0	305795..306343	+	182	62317249	-	BruAb2_0308	-	transcriptional regulator
289	 61.15	0	306386..307636	-	416	62317250	dadA	BruAb2_0309	-	D-amino acid dehydrogenase small subunit
290	 58.50	0	307652..308851	-	399	62317251	alr	BruAb2_0310	-	Alr, alanine racemase
291	 59.40	0	309092..309559	+	155	62317252	-	BruAb2_0311	-	alanine catabolic operon transcriptional regulator
292	 56.37	0	309707..310561	-	284	62317253	-	BruAb2_0312	-	outer surface protein
293	 58.12	0	310840..311985	-	381	62317254	lldD	BruAb2_0313	-	LldD, L-lactate dehydrogenase
294	 60.14	0	312190..314502	+	770	62317255	-	BruAb2_0314	-	oxidoreductase
295	 60.14	0	314499..314789	+	96	62317256	-	BruAb2_0315	-	hypothetical protein
296	 43.06	-2	314805..315020	+	71	62317257	-	BruAb2_0316	-	hypothetical protein
297	 59.34	0	315075..316193	+	372	62317258	-	BruAb2_0317	-	HlyD family secretion protein
298	 58.08	0	317206..320280	+	1024	62317259	-	BruAb2_0319	-	AcrB/AcrD/AcrF multidrug efflux protein
299	 62.40	+1	320425..321150	+	241	62317260	-	BruAb2_0320	-	GntR family transcriptional regulator
300	 58.43	0	321153..322184	+	343	62317261	nagB	BruAb2_0321	-	NagB, glucosamine-fructose-6-phosphate aminotransferase
301	 62.38	+1	322181..323347	+	388	62317262	nagA	BruAb2_0322	-	NagA, N-acetylglucosamine-6-phosphate deacetylase
302	 61.45	+1	323355..324083	+	242	62317263	-	BruAb2_0323	-	hypothetical protein
303	 55.14	0	324227..325111	+	294	62317264	purU	BruAb2_0324	-	formyltetrahydrofolate deformylase
304	 60.15	0	325335..326837	-	500	62317265	-	BruAb2_0325	-	aldehyde dehydrogenase family protein
305	 59.89	0	326911..328311	-	466	62317266	-	BruAb2_0326	-	hypothetical protein
306	 56.70	0	328459..329391	+	310	62317267	-	BruAb2_0327	-	LysR family transcriptional regulator
307	 59.35	0	329491..330774	+	427	62317268	-	BruAb2_0328	-	oxidoreductase
308	 54.69	0	333380..333688	+	102	62317269	-	BruAb2_0330	-	ArsR family transcriptional regulator
309	 58.96	0	333732..334847	+	371	62317270	-	BruAb2_0331	-	oxidoreductase, FMN-binding
310	 60.96	0	334885..335322	-	145	62317271	-	BruAb2_0332	-	AsnC family transcriptional regulator
311	 59.83	0	335453..336373	+	306	62317272	rocF	BruAb2_0333	-	RocF, arginase
312	 56.82	0	336412..337488	+	358	62317273	arcB	BruAb2_0334	-	ornithine cyclodeaminase
313	 55.63	0	337501..337926	-	141	62317274	-	BruAb2_0335	-	hypothetical protein
314	 53.92	0	337998..338507	+	169	62317275	-	BruAb2_0336	-	hypothetical protein
315	 51.04	-1	338722..338913	+	63	62317276	-	BruAb2_0337	-	hypothetical protein
316	 52.12	-1	338921..339463	+	180	62317277	-	BruAb2_0338	-	hypothetical protein
317	 60.10	0	339696..340685	+	329	62317278	trx-2	BruAb2_0339	-	Trx-2, thioredoxin
318	 57.59	0	340749..341453	+	234	62317279	-	BruAb2_0340	-	ATP-dependent protease La
319	 61.54	+1	341630..341824	+	64	62317280	-	BruAb2_0341	-	hypothetical protein
320	 59.84	0	342124..343236	+	370	62317281	leuB	BruAb2_0342	-	3-isopropylmalate dehydrogenase
321	 58.31	0	343377..344429	+	350	62317282	-	BruAb2_0343	-	Ada family regulatory protein
322	 58.93	0	344487..346385	-	632	62317283	-	BruAb2_0344	-	major facilitator family transporter
323	 56.91	0	346908..347942	+	344	62317284	asd	BruAb2_0345	-	aspartate-semialdehyde dehydrogenase
324	 58.55	0	348006..348461	-	151	62317285	-	BruAb2_0346	-	MarR family transcriptional regulator
325	 62.88	+1	348667..349089	+	140	62317286	ohr	BruAb2_0347	-	Ohr, organic hydroperoxide resistance protein
326	 54.85	0	349140..349562	-	140	62317287	-	BruAb2_0348	-	hypothetical protein
327	 56.27	0	349648..350253	-	201	62317288	leuD	BruAb2_0349	-	isopropylmalate isomerase small subunit
328	 50.24	-1	350318..350524	-	68	62317289	-	BruAb2_0350	-	hypothetical protein
329	 60.50	0	350678..351553	+	291	62317290	-	BruAb2_0351	-	citrate lyase beta chain
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.