IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
178	 59.70	0	179525..180916	-	463	62317139	fumC	BruAb2_0187	-	fumarate hydratase
179	 56.86	0	181066..181320	-	84	62317140	-	BruAb2_0188	-	hypothetical protein
180	 54.05	0	181650..181871	-	73	62317141	-	BruAb2_0189	-	hypothetical protein
181	 58.93	0	182073..183713	-	546	62317142	groEL	BruAb2_0190	-	chaperonin GroEL
182	 59.60	0	183804..184100	-	98	62317143	groES	BruAb2_0191	-	co-chaperonin GroES
183	 54.61	0	184220..184360	+	46	62317144	-	BruAb2_0192	-	hypothetical protein
184	 53.33	0	184413..184517	-	34	62317145	-	BruAb2_0193	-	hypothetical protein
185	 59.13	0	184581..185429	+	282	62317146	-	BruAb2_0194	-	HAD superfamily hydrolase
186	 53.51	0	185465..185578	+	37	62317147	-	BruAb2_0195	-	hypothetical protein
187	 59.60	0	185559..186506	+	315	62317148	ribF	BruAb2_0196	-	bifunctional riboflavin kinase/FMN adenylyltransferase
188	 58.27	0	186850..189768	+	972	62317149	ileS	BruAb2_0197	-	isoleucyl-tRNA synthetase
189	 62.35	+1	189960..190631	+	223	62317150	-	BruAb2_0198	-	hypothetical protein
190	 54.90	0	190976..191536	+	186	62317151	-	BruAb2_0199	-	cytochrome b561
191	 59.92	0	191590..192063	-	157	62317152	-	BruAb2_0200	-	cytidine and deoxycytidylate deaminase family protein
192	 64.32	+1	192204..193949	+	581	62317153	-	BruAb2_0201	-	RNA pseudouridylate synthase family protein
193	 59.40	0	193930..194493	+	187	62317154	-	BruAb2_0202	-	hypothetical protein
194	 57.71	0	194672..196123	+	483	62317155	-	BruAb2_0203	-	protease
195	 57.48	0	197497..198378	+	293	62317156	-	BruAb2_0205	-	hypothetical protein
196	 59.84	0	198391..200235	-	614	62317157	-	BruAb2_0206	-	lutathione-regulated potassium-efflux system protein
197	 61.90	+1	200437..201780	+	447	62317158	pmbA	BruAb2_0207	-	hypothetical protein
198	 59.88	0	201767..202576	+	269	62317159	-	BruAb2_0208	-	inositol monophosphatase family protein
199	 53.57	0	202615..202866	+	83	62317160	-	BruAb2_0209	-	hypothetical protein
200	 58.74	0	202930..203673	+	247	62317161	-	BruAb2_0210	-	hypothetical protein
201	 61.07	0	203670..205010	+	446	62317162	kdtA	BruAb2_0211	-	3-deoxy-D-manno-octulosonic-acid transferase
202	 62.18	+1	205013..206038	+	341	62317163	lpxK	BruAb2_0212	-	tetraacyldisaccharide 4'-kinase
203	 59.07	0	206052..206288	-	78	62317164	-	BruAb2_0213	-	hypothetical protein
204	 62.45	+1	206386..208257	-	623	62317165	mutL	BruAb2_0214	-	DNA mismatch repair protein
205	 58.26	0	208441..209724	-	427	62317166	mucK	BruAb2_0215	-	MucK, cis,cis-muconate transport protein
206	 58.10	0	209822..210976	-	384	62317167	-	BruAb2_0216	-	acyl-CoA dehydrogenase
207	 59.18	0	211033..211887	-	284	62317168	-	BruAb2_0217	-	IclR family transcriptional regulator
208	 59.12	0	214653..215792	+	379	62317169	-	BruAb2_0220	-	CAIB/BAIF family protein
209	 63.06	+1	215879..217153	-	424	62317170	-	BruAb2_0221	-	FMN-binding oxidoreductase
210	 56.99	0	217239..217703	+	154	62317171	-	BruAb2_0222	-	MerR family transcriptional regulator
211	 61.30	0	217801..219141	-	446	62317172	-	BruAb2_0223	-	sensor histidine kinase
212	 57.67	0	219141..219818	-	225	62317173	-	BruAb2_0224	-	two component response regulator
213	 52.12	-1	219946..220110	-	54	62317174	-	BruAb2_0225	-	hypothetical protein
214	 57.14	0	220082..220354	+	90	62317175	-	BruAb2_0226	-	hypothetical protein
215	 59.45	0	220522..220992	+	156	62317176	-	BruAb2_0227	-	hypothetical protein
216	 61.35	0	223189..224166	+	325	62317177	-	BruAb2_0229	-	ApbE family protein
217	 56.60	0	226529..227134	+	201	62317178	-	BruAb2_0232	-	glutathione S-transferase
218	 52.97	0	227317..227703	+	128	62317179	-	BruAb2_0233	-	extradiol ring-cleaving dioxygenase
219	 57.35	0	227856..228263	+	135	62317180	-	BruAb2_0234	-	hypothetical protein
220	 56.62	0	228360..230390	+	676	62317181	-	BruAb2_0235	-	TonB-dependent receptor protein
221	 55.33	0	230558..231739	+	393	62317182	-	BruAb2_0236	-	hypothetical protein
222	 55.22	0	231833..232627	-	264	62317183	-	BruAb2_0237	-	IclR family transcriptional regulator
223	 58.84	0	234004..235536	+	510	62317184	rbsA-4	BruAb2_0239	-	RbsA-4, ribose ABC transporter, ATP-binding protein
224	 57.08	0	235536..236495	+	319	62317185	rbsC-5	BruAb2_0240	-	ribose ABC transporter, permease protein
225	 61.43	+1	236492..237445	+	317	62317186	rbsC-4	BruAb2_0241	-	RbsC-4, ribose ABC transporter, permease protein
226	 53.10	0	237445..237864	+	139	62317187	-	BruAb2_0242	-	hypothetical protein
227	 58.07	0	238072..238734	-	220	62317188	-	BruAb2_0243	-	putative sulfite oxidase subunit YedZ
228	 57.19	0	238736..239695	-	319	62317189	-	BruAb2_0244	-	putative sulfite oxidase subunit YedY
229	 56.86	0	240118..240984	+	288	62317190	-	BruAb2_0245	-	hypothetical protein
230	 61.33	0	241101..242075	-	324	62317191	-	BruAb2_0246	-	WD repeat-containing protein
231	 59.04	0	242194..243333	-	379	62317192	-	BruAb2_0247	-	cobalamin synthesis protein/P47K family protein
232	 57.07	0	243569..244339	-	256	62317193	-	BruAb2_0248	-	creatinine amidohydrolase
233	 61.08	0	245156..246175	+	339	62317194	-	BruAb2_0250	-	transcriptional regulator
234	 59.18	0	246261..247235	+	324	62317195	-	BruAb2_0251	-	glycerate dehydrogenase
235	 59.69	0	247337..248110	-	257	62317196	-	BruAb2_0252	-	glutamine amidotransferase, class I
236	 60.27	0	248345..249094	+	249	62317197	-	BruAb2_0253	-	2-deoxy-d-gluconate 3-dehydrogenase
237	 50.35	-1	249075..249215	+	46	62317198	-	BruAb2_0254	-	hypothetical protein
238	 52.30	-1	252009..253226	+	405	62317199	-	BruAb2_0256	-	hypothetical protein
239	 51.35	-1	253280..253390	+	36	62317200	-	BruAb2_0257	-	hypothetical protein
240	 56.22	0	253498..254244	+	248	62317201	-	BruAb2_0258	-	hypothetical protein
241	 51.56	-1	254448..254672	+	74	62317202	-	BruAb2_0259	-	hypothetical protein
242	 60.33	0	254896..256173	+	425	62317203	pntA	BruAb2_0260	-	PntA, NAD(P) transhydrogenase, alpha subunit
243	 57.86	0	256173..256592	+	139	62317204	pntAB	BruAb2_0261	-	PntAB, NAD(P) transhydrogenase, alpha2 subunit
244	 59.31	0	256605..258005	+	466	62317205	pntB	BruAb2_0262	-	PntB, NAD(P) transhydrogenase, beta subunit
245	 60.21	0	258107..259423	-	438	62317206	-	BruAb2_0263	-	oxidoreductase
246	 59.38	0	259619..260290	+	223	62317207	-	BruAb2_0264	-	HAD superfamily hydrolase
247	 57.86	0	260365..260841	+	158	62317208	-	BruAb2_0265	-	nodulation protein N
248	 59.65	0	262464..262691	+	75	62317209	rpsU	BruAb2_0267	-	30S ribosomal protein S21
249	 46.30	-2	262965..263126	-	53	62317210	-	BruAb2_0268	-	hypothetical protein
250	 56.42	0	263220..264107	+	295	62317211	-	BruAb2_0269	-	TPR domain-containing protein
251	 58.58	0	264199..264606	+	135	62317212	-	BruAb2_0270	-	glyoxalase family protein
252	 59.91	0	264619..265284	-	221	62317213	-	BruAb2_0271	-	ABC transporter, permease protein
253	 59.30	0	265265..266323	-	352	62317214	-	BruAb2_0272	-	ABC transporter, ATP-binding protein
254	 56.99	0	266788..267624	-	278	62317215	-	BruAb2_0273	-	YaeC family lipoprotein
255	 46.53	-2	267718..267861	-	47	62317216	-	BruAb2_0274	-	hypothetical protein
256	 59.54	0	267858..269456	-	532	62317217	-	BruAb2_0275	-	GMC family oxidoreductase
257	 57.52	0	269520..270503	-	327	62317218	-	BruAb2_0276	-	branched-chain amino acid ABC transporter, permease protein
258	 59.35	0	270505..271392	-	295	62317219	-	BruAb2_0277	-	branched-chain amino acid ABC transporter, permease protein
259	 60.74	0	271397..272122	-	241	62317220	-	BruAb2_0278	-	branched-chain amino acid ABC transporter ATP-binding protein
260	 61.27	0	272115..272930	-	271	62317221	-	BruAb2_0279	-	branched-chain amino acid ABC transporter, ATP-binding protein
261	 58.46	0	272943..274148	-	401	62317222	-	BruAb2_0280	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
262	 58.36	0	274413..275327	+	304	62317223	-	BruAb2_0281	-	LysR family transcriptional regulator
263	 59.86	0	275543..275983	-	146	62317224	-	BruAb2_0282	-	AsnC family transcriptional regulator
264	 52.78	-1	275997..276140	+	47	62317225	-	BruAb2_0283	-	hypothetical protein
265	 59.99	0	276234..279305	+	1023	62317226	-	BruAb2_0284	-	hypothetical protein
266	 58.53	0	279409..280428	+	339	62317227	-	BruAb2_0285	-	amino acid ABC transporter, periplasmic amino acid-binding protein
267	 60.05	0	280459..282015	-	518	62317228	-	BruAb2_0286	-	D-aminopeptidase
268	 54.76	0	282040..282207	-	55	62317229	-	BruAb2_0287	-	hypothetical protein
269	 61.45	+1	282431..284116	+	561	62317230	-	BruAb2_0288	-	acetolactate synthase 2 catalytic subunit
270	 61.98	+1	284129..284854	-	241	62317231	-	BruAb2_0289	-	GntR family transcriptional regulator
271	 52.04	-1	284879..285172	-	97	62317232	-	BruAb2_0290	-	hypothetical protein
272	 58.61	0	285442..286434	+	330	62317233	-	BruAb2_0291	-	hypothetical protein
273	 60.04	0	286443..287378	+	311	62317234	-	BruAb2_0292	-	D-galactose 1-dehydrogenase
274	 58.53	0	287475..289280	+	601	62317235	-	BruAb2_0293	-	dihydroxy-acid dehydratase
275	 62.04	+1	289295..290224	+	309	62317236	dgoK	BruAb2_0294	-	DgoK, 2-dehydro-3-deoxygalactonokinase
276	 60.82	0	290221..290853	+	210	62317237	-	BruAb2_0295	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
277	 56.04	0	292208..293797	+	529	62317238	-	BruAb2_0297	-	sugar ABC transporter, ATP-binding protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.